FvH4_3g30010

RecQ-mediated genome instability protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015489
Physical Location & Seq
Reverse (-)
23230666 .. 23231294
629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30010.t1

Sequence Viewer

Length: 414 bp
ATGGACTACAGCCAAGCAGCGGTGAAGCTGCTCTGCGCCCATCTAAAGCACGCAGTCGAATCCCCTCTCGACAACGCCATGAACCTCGACGGCATCCTCTTCCAACGCGCCTGGTTACAGGGCATTCTGGTCTCCGCCTCCCCCGACTCCGACCGCTTCCTCCTCGACGATGGCACCGGCCTCATCGAGCTTTGCCTCTCTCCCGACTTCCGCCGCCGCTCCTGGACAGTGGGAATGTATGTATTGGCTCTCGGACGCTACACTCTCCGTACAGATGAGCCCCCAATGATTCAGATTCACAAGATGGTTGATCTTTCGGCCTCCCCTGATCGAGAGGCTATGTGGTATCTTGAAGTTTTGGAGGCTTATAAGCTTTTCTATCAGCGCTTGATCGACGACCCTATGCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
RMI2

Protein Analysis

138

Amino Acids

15.73

Weight (kDa)

4.94

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI2 PF16100 6 - 123 6.9e-30 RecQ-mediated genome instability protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08390 AT1G08390
fragaria_vesca FvH4_3g30010
malus_domestica MD11G1153700.v1.1
prunus_persica Prupe.6G116400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0055931
rosa_laevigata RLG00000035024 RLG00000035030
rosa_multiflora Rmu_sc0006749.1_g000003
rosa_roxburghii Rroxscaffold_1G00024430
rosa_rugosa Rorug05G0295400
rosa_samantha Rh5AG366900 Rh5BG377100 Rh5CG400400 Rh5DG390600
rosa_wichuraiana Rw5G034400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 219
AccII CGCG 1 cut(s) 108
AciI CCGC 6 cut(s) 20, 135, 154, 211, 214, 217
AfaI GTAC 1 cut(s) 271
AfeI AGCGCT 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 2 cut(s) 110, 221
AluBI AGCT 3 cut(s) 28, 190, 373
AluI AGCT 3 cut(s) 28, 190, 373
Alw26I GTCTC 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 386
AoxI GGCC 2 cut(s) 178, 318
ApeKI GCWGC 2 cut(s) 17, 28
AspLEI GCGC 3 cut(s) 38, 110, 387
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 15, 29
BccI CCATC 3 cut(s) 48, 164, 298
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 112, 223
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 388
BisI GCNGC 4 cut(s) 18, 29, 214, 217
BlsI GCNGC 4 cut(s) 19, 30, 215, 218
Bme1390I CCNGG 2 cut(s) 112, 223
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 112, 223
BmsI GCATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 2 cut(s) 112, 223
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 15, 29
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 180, 320
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 2 cut(s) 180, 320
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 310, 328, 390
BspACI CCGC 6 cut(s) 20, 135, 154, 211, 214, 217
BspANI GGCC 2 cut(s) 180, 320
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssMI GATC 3 cut(s) 310, 328, 390
Bst2UI CCWGG 2 cut(s) 112, 223
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 38, 110, 387
BstKTI GATC 3 cut(s) 313, 331, 393
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 3 cut(s) 310, 328, 390
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 2 cut(s) 112, 223
BstSCI CCNGG 2 cut(s) 110, 221
BstSFI CTRYAG 1 cut(s) 7
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 15, 29
BsuRI GGCC 2 cut(s) 180, 320
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 3 cut(s) 38, 110, 387
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 79, 407
CviQI GTAC 1 cut(s) 270
DpnI GATC 3 cut(s) 312, 330, 392
DpnII GATC 3 cut(s) 310, 328, 390
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 2 cut(s) 124, 200
Eco24I GRGCYC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 110, 221
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 2 cut(s) 82, 410
FaiI YATR 6 cut(s) 80, 240, 341, 369, 404, 408
FatI CATG 2 cut(s) 78, 406
Fnu4HI GCNGC 4 cut(s) 18, 29, 214, 217
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 4 cut(s) 18, 29, 214, 217
GlaI GCGC 3 cut(s) 37, 109, 386
GluI GCNGC 4 cut(s) 18, 29, 214, 217
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 2 cut(s) 180, 320
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 264
HhaI GCGC 3 cut(s) 38, 110, 387
Hin1II CATG 2 cut(s) 82, 410
Hin6I GCGC 3 cut(s) 36, 108, 385
HinP1I GCGC 3 cut(s) 36, 108, 385
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 4 cut(s) 59, 146, 289, 295
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 151, 254, 294
Hpy188III TCNNGA 4 cut(s) 68, 203, 332, 350
Hpy99I CGWCG 3 cut(s) 92, 170, 398
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 406
Hsp92II CATG 2 cut(s) 82, 410
HspAI GCGC 3 cut(s) 36, 108, 385
Kzo9I GATC 3 cut(s) 310, 328, 390
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 8 cut(s) 97, 104, 113, 124, 190, 208, 235, 339
Lsp1109I GCAGC 2 cut(s) 15, 29
LweI GCATC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 114
MalI GATC 3 cut(s) 312, 330, 392
MbiI CCGCTC 1 cut(s) 219
MboI GATC 3 cut(s) 310, 328, 390
MboII GAAGA 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 127, 174
Mph1103I ATGCAT 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 112, 223
Mva1269I GAATGC 1 cut(s) 123
MvaI CCWGG 2 cut(s) 112, 223
MvnI CGCG 1 cut(s) 108
NdeII GATC 3 cut(s) 310, 328, 390
NlaIII CATG 2 cut(s) 82, 410
NlaIV GGNNCC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 408
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 3 cut(s) 59, 289, 295
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 4 cut(s) 19, 30, 215, 218
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 110, 221
PspGI CCWGG 2 cut(s) 110, 221
PspN4I GGNNCC 1 cut(s) 175
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SatI GCNGC 4 cut(s) 18, 29, 214, 217
Sau3AI GATC 3 cut(s) 310, 328, 390
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 112, 223
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 30, 87, 192, 375
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 7
SsiI CCGC 6 cut(s) 20, 135, 154, 211, 214, 217
StyD4I CCNGG 2 cut(s) 110, 221
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 7 cut(s) 57, 69, 87, 165, 186, 331, 393
TauI GCSGC 2 cut(s) 216, 219
TfiI GAWTC 3 cut(s) 59, 289, 295
TscAI CASTG 1 cut(s) 234
TseI GCWGC 2 cut(s) 17, 28
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.