Rh5AG366900

RecQ-mediated genome instability protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015489
Physical Location & Seq
Forward (+)
62026361 .. 62027319
959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG366900.1

Sequence Viewer

Length: 414 bp
ATGAACTACGAGCTTGCAGCGGTGAAGCTGCTCTACGCCCATCTCAAGCACGCAGTCGAATCCCCTTCCGAGAACGCCATGGACCTCCACGGCATCCTCTTCCAACGCGCCTGGTTACAGGGCATTTTGGTCTGGGCCTCCCCCGACGGCGACCGCTTGCTTCTCGACGACGGCACCGGAGTCATCGAACTCTGCCTCACTCCCGAGTTCCGCCGCCGCCCTTGGAGAATCGGAATGTATGTAATGGCTGTTGGACGCTACACTGTCCGTACAGATGAGCCCCCAATGATCCAGATTCACAAGATGGTTGATCTTTCGGCTTCCCCTGATCGAGAGGCGATGTGGTACCTTGAAGTTTTGGAGGCTTATAAATTCTTCTATCAGCGCATGATTGACGACCCTATGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
RMI2

Protein Analysis

137

Amino Acids

16.03

Weight (kDa)

5.15

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI2 PF16100 6 - 123 2.6e-31 RecQ-mediated genome instability protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08390 AT1G08390
fragaria_vesca FvH4_3g30010
malus_domestica MD11G1153700.v1.1
prunus_persica Prupe.6G116400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0055931
rosa_laevigata RLG00000035024 RLG00000035030
rosa_multiflora Rmu_sc0006749.1_g000003
rosa_roxburghii Rroxscaffold_1G00024430
rosa_rugosa Rorug05G0295400
rosa_samantha Rh5AG366900 Rh5BG377100 Rh5CG400400 Rh5DG390600
rosa_wichuraiana Rw5G034400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
Acc65I GGTACC 1 cut(s) 345
AccB1I GGYRCC 2 cut(s) 173, 345
AccII CGCG 1 cut(s) 108
AciI CCGC 5 cut(s) 20, 154, 211, 214, 217
AclWI GGATC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 2 cut(s) 271, 347
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 13, 28
AluI AGCT 2 cut(s) 13, 28
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 17, 28
ApoI RAATTY 1 cut(s) 371
Asp718I GGTACC 1 cut(s) 345
AspLEI GCGC 2 cut(s) 110, 387
AspS9I GGNCC 2 cut(s) 82, 135
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 82
BanI GGYRCC 2 cut(s) 173, 345
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbvI GCAGC 2 cut(s) 15, 29
BccI CCATC 2 cut(s) 48, 298
BceAI ACGGC 3 cut(s) 106, 163, 187
BciT130I CCWGG 1 cut(s) 112
BisI GCNGC 4 cut(s) 18, 29, 214, 217
BlsI GCNGC 4 cut(s) 19, 30, 215, 218
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 82, 135
BmiI GGNNCC 2 cut(s) 175, 347
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 78, 88, 221
BsaWI WCCGGW 1 cut(s) 176
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 78, 88, 221
BseGI GGATG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 15, 29
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 173, 345
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 288, 310, 328
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 5 cut(s) 20, 154, 211, 214, 217
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 175, 347
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 2 cut(s) 173, 345
BssECI CCNNGG 3 cut(s) 78, 88, 221
BssMI GATC 3 cut(s) 288, 310, 328
BssT1I CCWWGG 2 cut(s) 78, 221
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 15, 51, 158
BstDSI CCRYGG 2 cut(s) 78, 88
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 110, 387
BstKTI GATC 3 cut(s) 291, 313, 331
BstMBI GATC 3 cut(s) 288, 310, 328
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 15, 29
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 2 cut(s) 78, 88
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 3 cut(s) 15, 51, 158
CfoI GCGC 2 cut(s) 110, 387
Cfr13I GGNCC 2 cut(s) 82, 135
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 270, 346
CviAII CATG 2 cut(s) 79, 388
CviJI RGCY 7 cut(s) 13, 28, 137, 248, 280, 320, 365
CviKI_1 RGCY 7 cut(s) 13, 28, 137, 248, 280, 320, 365
CviQI GTAC 2 cut(s) 270, 346
DpnI GATC 3 cut(s) 290, 312, 330
DpnII GATC 3 cut(s) 288, 310, 328
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 78, 221
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 78, 221
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 78, 221
FaeI CATG 2 cut(s) 82, 391
FaiI YATR 6 cut(s) 80, 240, 369, 389, 404, 408
FatI CATG 2 cut(s) 78, 387
Fnu4HI GCNGC 4 cut(s) 18, 29, 214, 217
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 4 cut(s) 18, 29, 214, 217
GlaI GCGC 2 cut(s) 109, 386
GluI GCNGC 4 cut(s) 18, 29, 214, 217
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 264
HhaI GCGC 2 cut(s) 110, 387
Hin1II CATG 2 cut(s) 82, 391
Hin6I GCGC 2 cut(s) 108, 385
HinP1I GCGC 2 cut(s) 108, 385
HinfI GANTC 4 cut(s) 59, 180, 228, 295
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 70, 233
Hpy188III TCNNGA 4 cut(s) 164, 203, 292, 332
Hpy99I CGWCG 3 cut(s) 149, 170, 173
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 17
Hsp92II CATG 2 cut(s) 82, 391
HspAI GCGC 2 cut(s) 108, 385
KpnI GGTACC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 288, 310, 328
LpnPI CCDG 7 cut(s) 97, 104, 118, 124, 190, 305, 339
Lsp1109I GCAGC 2 cut(s) 15, 29
LweI GCATC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 114
MalI GATC 3 cut(s) 290, 312, 330
MboI GATC 3 cut(s) 288, 310, 328
MboII GAAGA 2 cut(s) 91, 367
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 371
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 2 cut(s) 127, 232
MnlI CCTC 6 cut(s) 95, 107, 148, 206, 328, 355
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 78
NdeII GATC 3 cut(s) 288, 310, 328
NlaIII CATG 2 cut(s) 82, 391
NlaIV GGNNCC 2 cut(s) 175, 347
PfeI GAWTC 3 cut(s) 59, 228, 295
PkrI GCNGC 4 cut(s) 19, 30, 215, 218
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 175, 347
PspPI GGNCC 2 cut(s) 82, 135
RsaI GTAC 2 cut(s) 271, 347
RsaNI GTAC 2 cut(s) 270, 346
SatI GCNGC 4 cut(s) 18, 29, 214, 217
Sau3AI GATC 3 cut(s) 288, 310, 328
Sau96I GGNCC 2 cut(s) 82, 135
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 15, 30, 87, 351
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 371
SsiI CCGC 5 cut(s) 20, 154, 211, 214, 217
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 2 cut(s) 78, 221
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 4 cut(s) 57, 165, 186, 331
TasI AATT 1 cut(s) 371
TauI GCSGC 2 cut(s) 216, 219
TfiI GAWTC 3 cut(s) 59, 228, 295
TscAI CASTG 1 cut(s) 268
TseI GCWGC 2 cut(s) 17, 28
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.