RLG00000035024

RecQ-mediated genome instability protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015489
Physical Location & Seq
Forward (+)
59327538 .. 59328476
939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035024

Sequence Viewer

Length: 408 bp
ATGAACTACGAGCTGGCAGCAGTGAAGCTGCTCTGCTCCCATCTCAAGCACGCAGTCCCTTCCGAGAACGCCATGGACCTCCACGGCATCCTCTTCCAACGCGCCTGGTTACAGGGCATTTTGGTCTGGGCTTCCCCCGACGGCGACCGCTTGCTTCTCGACGACGGCACCGGAGTCATCGAACTCTGCCTCACTCCCGAGTTCCGCCGCCGCCCTTGGAGAATCGGAATGTATGTAATGGCTGTTGGACGCTACACTGTCCGTACAGATGAGCCCCCAATGATCCAGATTCACAAGATGGTTGATCTTTCGGCTTCCCCTGATCGAGAGGCGATGTGGTACCTTGAAGTTTTGGAGGCTTATAAATTCTTCTATCAGCGCATGATTGACGACCCTCTGCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
RMI2

Protein Analysis

136

Amino Acids

15.72

Weight (kDa)

5.47

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI2 PF16100 6 - 121 8e-32 RecQ-mediated genome instability protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08390 AT1G08390
fragaria_vesca FvH4_3g30010
malus_domestica MD11G1153700.v1.1
prunus_persica Prupe.6G116400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0055931
rosa_laevigata RLG00000035024 RLG00000035030
rosa_multiflora Rmu_sc0006749.1_g000003
rosa_roxburghii Rroxscaffold_1G00024430
rosa_rugosa Rorug05G0295400
rosa_samantha Rh5AG366900 Rh5BG377100 Rh5CG400400 Rh5DG390600
rosa_wichuraiana Rw5G034400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
Acc65I GGTACC 1 cut(s) 339
AccB1I GGYRCC 2 cut(s) 167, 339
AccII CGCG 1 cut(s) 102
AciI CCGC 4 cut(s) 148, 205, 208, 211
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 265, 341
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 2 cut(s) 13, 28
AluI AGCT 2 cut(s) 13, 28
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 17, 28
ApoI RAATTY 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 104, 381
AspS9I GGNCC 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 167, 339
BanII GRGCYC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 15, 29
BccI CCATC 2 cut(s) 48, 292
BceAI ACGGC 3 cut(s) 100, 157, 181
BciT130I CCWGG 1 cut(s) 106
BisI GCNGC 4 cut(s) 18, 29, 208, 211
BlsI GCNGC 4 cut(s) 19, 30, 209, 212
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 169, 341
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 72, 82, 215
BsaWI WCCGGW 1 cut(s) 170
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 3 cut(s) 72, 82, 215
BseGI GGATG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 15, 29
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 148
BshNI GGYRCC 2 cut(s) 167, 339
BsiEI CGRYCG 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 282, 304, 322
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 4 cut(s) 148, 205, 208, 211
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 169, 341
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 2 cut(s) 167, 339
BssECI CCNNGG 3 cut(s) 72, 82, 215
BssMI GATC 3 cut(s) 282, 304, 322
BssT1I CCWWGG 2 cut(s) 72, 215
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 15, 51, 152
BstDSI CCRYGG 2 cut(s) 72, 82
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 2 cut(s) 104, 381
BstKTI GATC 3 cut(s) 285, 307, 325
BstMBI GATC 3 cut(s) 282, 304, 322
BstMCI CGRYCG 1 cut(s) 148
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 15, 29
BtgI CCRYGG 2 cut(s) 72, 82
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 255
Cac8I GCNNGC 3 cut(s) 15, 51, 152
CfoI GCGC 2 cut(s) 104, 381
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 264, 340
CviAII CATG 3 cut(s) 73, 382, 401
CviJI RGCY 7 cut(s) 13, 28, 131, 242, 274, 314, 359
CviKI_1 RGCY 7 cut(s) 13, 28, 131, 242, 274, 314, 359
CviQI GTAC 2 cut(s) 264, 340
DpnI GATC 3 cut(s) 284, 306, 324
DpnII GATC 3 cut(s) 282, 304, 322
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 72, 215
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 2 cut(s) 72, 215
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 72, 215
FaeI CATG 3 cut(s) 76, 385, 404
FaiI YATR 5 cut(s) 74, 234, 363, 383, 402
FaqI GGGAC 1 cut(s) 41
FatI CATG 3 cut(s) 72, 381, 400
Fnu4HI GCNGC 4 cut(s) 18, 29, 208, 211
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 18, 29, 208, 211
GlaI GCGC 2 cut(s) 103, 380
GluI GCNGC 4 cut(s) 18, 29, 208, 211
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 258
HhaI GCGC 2 cut(s) 104, 381
Hin1II CATG 3 cut(s) 76, 385, 404
Hin6I GCGC 2 cut(s) 102, 379
HinP1I GCGC 2 cut(s) 102, 379
HinfI GANTC 3 cut(s) 174, 222, 289
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 64, 227
Hpy188III TCNNGA 4 cut(s) 158, 197, 286, 326
Hpy99I CGWCG 3 cut(s) 143, 164, 167
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 400
Hsp92II CATG 3 cut(s) 76, 385, 404
HspAI GCGC 2 cut(s) 102, 379
KpnI GGTACC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 282, 304, 322
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 7 cut(s) 91, 98, 112, 118, 184, 299, 333
Lsp1109I GCAGC 2 cut(s) 15, 29
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 108
MalI GATC 3 cut(s) 284, 306, 324
MboI GATC 3 cut(s) 282, 304, 322
MboII GAAGA 2 cut(s) 85, 361
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 2 cut(s) 121, 226
MnlI CCTC 6 cut(s) 89, 101, 200, 322, 349, 405
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 72
NdeII GATC 3 cut(s) 282, 304, 322
NlaIII CATG 3 cut(s) 76, 385, 404
NlaIV GGNNCC 2 cut(s) 169, 341
PfeI GAWTC 2 cut(s) 222, 289
PkrI GCNGC 4 cut(s) 19, 30, 209, 212
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 169, 341
PspPI GGNCC 1 cut(s) 76
RsaI GTAC 2 cut(s) 265, 341
RsaNI GTAC 2 cut(s) 264, 340
SatI GCNGC 4 cut(s) 18, 29, 208, 211
Sau3AI GATC 3 cut(s) 282, 304, 322
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 276
SetI ASST 4 cut(s) 15, 30, 81, 345
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 365
SsiI CCGC 4 cut(s) 148, 205, 208, 211
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 2 cut(s) 72, 215
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 159, 180, 325
TasI AATT 1 cut(s) 365
TauI GCSGC 2 cut(s) 210, 213
TfiI GAWTC 2 cut(s) 222, 289
TscAI CASTG 2 cut(s) 27, 262
TseI GCWGC 2 cut(s) 17, 28
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 2 cut(s) 27, 262
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.