RecQ-mediated genome instability protein 2
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNMT1-RFD | PF12047 | 13 - 131 | 3.1e-07 | Cytosine specific DNA methyltransferase replication foci domain |
| PHD_NSD | PF22908 | 283 - 351 | 1.5e-19 | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger |
| Mtase_EDM2 | PF26055 | 726 - 892 | 4.1e-88 | EDM2 methyltransferase-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 192, 512, 2052 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1408 |
| Acc36I | ACCTGC | 2 cut(s) | 3401, 3707 |
| AccB1I | GGYRCC | 2 cut(s) | 3212, 3637 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3590 |
| AccI | GTMKAC | 1 cut(s) | 63 |
| AccII | CGCG | 2 cut(s) | 2929, 3351 |
| AciI | CCGC | 7 cut(s) | 608, 1778, 1971, 2104, 2927, 2929, 3052 |
| AcoI | YGGCCR | 1 cut(s) | 3460 |
| AcsI | RAATTY | 4 cut(s) | 1325, 1513, 1729, 3709 |
| AcuI | CTGAAG | 2 cut(s) | 1020, 2025 |
| AcyI | GRCGYC | 1 cut(s) | 368 |
| AfaI | GTAC | 5 cut(s) | 1557, 2002, 2108, 2177, 2181 |
| AflIII | ACRYGT | 4 cut(s) | 1040, 2109, 3507, 3621 |
| AgeI | ACCGGT | 1 cut(s) | 2786 |
| AhlI | ACTAGT | 1 cut(s) | 1352 |
| AjiI | CACGTC | 1 cut(s) | 2112 |
| AjnI | CCWGG | 4 cut(s) | 2563, 2901, 3632, 3646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1628, 1660 |
| AleI | CACNNNNGTG | 2 cut(s) | 2135, 2198 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1474, 1506 |
| Alw21I | GWGCWC | 1 cut(s) | 2029 |
| Alw26I | GTCTC | 7 cut(s) | 2184, 2252, 2541, 2650, 3036, 3272, 3330 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2018 |
| Ama87I | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| AoxI | GGCC | 4 cut(s) | 425, 2924, 3460, 3661 |
| ApaI | GGGCCC | 1 cut(s) | 3665 |
| ApoI | RAATTY | 4 cut(s) | 1325, 1513, 1729, 3709 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2668, 2700, 3053, 3085 |
| AsiGI | ACCGGT | 1 cut(s) | 2786 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1453, 2312 |
| AspLEI | GCGC | 1 cut(s) | 3353 |
| AspS9I | GGNCC | 6 cut(s) | 735, 1315, 3123, 3204, 3661, 3662 |
| AsuC2I | CCSGG | 1 cut(s) | 3681 |
| AsuHPI | GGTGA | 8 cut(s) | 131, 458, 1532, 1597, 2366, 2882, 3662, 3680 |
| AsuII | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| AvaI | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| AvaII | GGWCC | 4 cut(s) | 735, 1315, 3123, 3204 |
| AxyI | CCTNAGG | 2 cut(s) | 731, 3571 |
| BaeGI | GKGCMC | 2 cut(s) | 3640, 3665 |
| BalI | TGGCCA | 1 cut(s) | 3462 |
| BamHI | GGATCC | 1 cut(s) | 1090 |
| BanI | GGYRCC | 2 cut(s) | 3212, 3637 |
| BanII | GRGCYC | 3 cut(s) | 180, 3078, 3665 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1230, 1262, 2099, 2131 |
| BauI | CACGAG | 1 cut(s) | 1932 |
| BbsI | GAAGAC | 6 cut(s) | 904, 1355, 1376, 1402, 1643, 3327 |
| Bbv12I | GWGCWC | 1 cut(s) | 2029 |
| BbvCI | CCTCAGC | 2 cut(s) | 24, 363 |
| BceAI | ACGGC | 2 cut(s) | 82, 775 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2138, 2172 |
| BciT130I | CCWGG | 4 cut(s) | 2565, 2903, 3634, 3648 |
| BciVI | GTATCC | 2 cut(s) | 1699, 3232 |
| BclI | TGATCA | 2 cut(s) | 448, 2379 |
| BcnI | CCSGG | 1 cut(s) | 3681 |
| BcoDI | GTCTC | 7 cut(s) | 2184, 2252, 2541, 2650, 3036, 3272, 3330 |
| BcuI | ACTAGT | 1 cut(s) | 1352 |
| BfaI | CTAG | 7 cut(s) | 1353, 1623, 1800, 3009, 3222, 3407, 3473 |
| BfmI | CTRYAG | 5 cut(s) | 576, 1914, 1985, 1996, 2447 |
| BfuAI | ACCTGC | 2 cut(s) | 3401, 3707 |
| BfuI | GTATCC | 2 cut(s) | 1699, 3232 |
| BmcAI | AGTACT | 1 cut(s) | 2002 |
| Bme1390I | CCNGG | 5 cut(s) | 2565, 2903, 3634, 3648, 3681 |
| Bme18I | GGWCC | 4 cut(s) | 735, 1315, 3123, 3204 |
| BmeT110I | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| BmgBI | CACGTC | 1 cut(s) | 2112 |
| BmgT120I | GGNCC | 6 cut(s) | 735, 1315, 3123, 3204, 3661, 3662 |
| BmrFI | CCNGG | 5 cut(s) | 2565, 2903, 3634, 3648, 3681 |
| BmrI | ACTGGG | 1 cut(s) | 1149 |
| BmuI | ACTGGG | 1 cut(s) | 1149 |
| BpiI | GAAGAC | 6 cut(s) | 904, 1355, 1376, 1402, 1643, 3327 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 68, 100 |
| BpmI | CTGGAG | 2 cut(s) | 263, 1028 |
| Bpu10I | CCTNAGC | 2 cut(s) | 24, 363 |
| Bpu14I | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| BpuEI | CTTGAG | 1 cut(s) | 2273 |
| BpuMI | CCSGG | 1 cut(s) | 3681 |
| BsaAI | YACGTR | 3 cut(s) | 2179, 3428, 3456 |
| BsaHI | GRCGYC | 1 cut(s) | 368 |
| BsaI | GGTCTC | 2 cut(s) | 2541, 3036 |
| BsaWI | WCCGGW | 3 cut(s) | 2362, 2786, 3705 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 103, 133, 1474, 1504, 2602, 2632 |
| Bse118I | RCCGGY | 1 cut(s) | 2786 |
| Bse1I | ACTGG | 6 cut(s) | 1011, 1155, 2428, 3154, 3207, 3216 |
| Bse21I | CCTNAGG | 2 cut(s) | 731, 3571 |
| Bse3DI | GCAATG | 6 cut(s) | 36, 357, 819, 2863, 3007, 3163 |
| BseBI | CCWGG | 4 cut(s) | 2565, 2903, 3634, 3648 |
| BseMI | GCAATG | 6 cut(s) | 36, 357, 819, 2863, 3007, 3163 |
| BseNI | ACTGG | 6 cut(s) | 1011, 1155, 2428, 3154, 3207, 3216 |
| BseRI | GAGGAG | 4 cut(s) | 304, 307, 874, 2270 |
| BseSI | GKGCMC | 2 cut(s) | 3640, 3665 |
| BseYI | CCCAGC | 1 cut(s) | 3077 |
| BsgI | GTGCAG | 4 cut(s) | 353, 924, 1135, 1470 |
| Bsh1236I | CGCG | 2 cut(s) | 2929, 3351 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2122, 2787 |
| BshFI | GGCC | 4 cut(s) | 427, 2926, 3462, 3663 |
| BshNI | GGYRCC | 2 cut(s) | 3212, 3637 |
| BshTI | ACCGGT | 1 cut(s) | 2786 |
| BsiEI | CGRYCG | 2 cut(s) | 2122, 2787 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2029 |
| BsiHKCI | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| BsiSI | CCGG | 4 cut(s) | 2363, 2787, 3681, 3706 |
| BsiWI | CGTACG | 1 cut(s) | 2175 |
| BslFI | GGGAC | 3 cut(s) | 1328, 1396, 2844 |
| BsmAI | GTCTC | 7 cut(s) | 2184, 2252, 2541, 2650, 3036, 3272, 3330 |
| BsmFI | GGGAC | 3 cut(s) | 1328, 1396, 2844 |
| BsmI | GAATGC | 1 cut(s) | 364 |
| BsnI | GGCC | 4 cut(s) | 427, 2926, 3462, 3663 |
| Bso31I | GGTCTC | 2 cut(s) | 2541, 3036 |
| BsoBI | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| Bsp119I | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| Bsp120I | GGGCCC | 1 cut(s) | 3661 |
| Bsp1286I | GDGCHC | 5 cut(s) | 180, 2029, 3078, 3640, 3665 |
| Bsp19I | CCATGG | 1 cut(s) | 3309 |
| BspACI | CCGC | 7 cut(s) | 608, 1778, 1971, 2104, 2927, 2929, 3052 |
| BspANI | GGCC | 4 cut(s) | 427, 2926, 3462, 3663 |
| BspFNI | CGCG | 2 cut(s) | 2929, 3351 |
| BspMAI | CTGCAG | 2 cut(s) | 2000, 2451 |
| BspMI | ACCTGC | 2 cut(s) | 3401, 3707 |
| BspQI | GCTCTTC | 3 cut(s) | 69, 525, 2054 |
| BspT104I | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| BspT107I | GGYRCC | 2 cut(s) | 3212, 3637 |
| BspTNI | GGTCTC | 2 cut(s) | 2541, 3036 |
| BsrDI | GCAATG | 6 cut(s) | 36, 357, 819, 2863, 3007, 3163 |
| BsrFI | RCCGGY | 1 cut(s) | 2786 |
| BsrI | ACTGG | 6 cut(s) | 1011, 1155, 2428, 3154, 3207, 3216 |
| BssAI | RCCGGY | 1 cut(s) | 2786 |
| BssNI | GRCGYC | 1 cut(s) | 368 |
| BssSI | CACGAG | 1 cut(s) | 1932 |
| BssT1I | CCWWGG | 5 cut(s) | 255, 492, 2850, 3309, 3655 |
| Bst2BI | CACGAG | 1 cut(s) | 1932 |
| Bst2UI | CCWGG | 4 cut(s) | 2565, 2903, 3634, 3648 |
| Bst6I | CTCTTC | 5 cut(s) | 69, 525, 1191, 2054, 2321 |
| BstACI | GRCGYC | 1 cut(s) | 368 |
| BstBAI | YACGTR | 3 cut(s) | 2179, 3428, 3456 |
| BstBI | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| BstC8I | GCNNGC | 6 cut(s) | 704, 1118, 1151, 2066, 2824, 3133 |
| BstDSI | CCRYGG | 3 cut(s) | 747, 2927, 3309 |
| BstEII | GGTNACC | 3 cut(s) | 2870, 2888, 3650 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| BstFNI | CGCG | 2 cut(s) | 2929, 3351 |
| BstHHI | GCGC | 1 cut(s) | 3353 |
| BstMAI | GTCTC | 7 cut(s) | 2184, 2252, 2541, 2650, 3036, 3272, 3330 |
| BstMCI | CGRYCG | 2 cut(s) | 2122, 2787 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 283, 433, 2024, 2101, 2420, 2455, 3073 |
| BstNI | CCWGG | 4 cut(s) | 2565, 2903, 3634, 3648 |
| BstNSI | RCATGY | 5 cut(s) | 415, 1044, 1820, 3511, 3625 |
| BstPI | GGTNACC | 3 cut(s) | 2870, 2888, 3650 |
| BstSCI | CCNGG | 5 cut(s) | 2563, 2901, 3632, 3646, 3679 |
| BstSFI | CTRYAG | 5 cut(s) | 576, 1914, 1985, 1996, 2447 |
| BstSLI | GKGCMC | 2 cut(s) | 3640, 3665 |
| BstSNI | TACGTA | 1 cut(s) | 2179 |
| BstUI | CGCG | 2 cut(s) | 2929, 3351 |
| BstV2I | GAAGAC | 6 cut(s) | 904, 1355, 1376, 1402, 1643, 3327 |
| BstX2I | RGATCY | 6 cut(s) | 1090, 1676, 1792, 2567, 2843, 3379 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 108, 3316 |
| BstYI | RGATCY | 6 cut(s) | 1090, 1676, 1792, 2567, 2843, 3379 |
| Bsu36I | CCTNAGG | 2 cut(s) | 731, 3571 |
| BsuI | GTATCC | 2 cut(s) | 1699, 3232 |
| BsuRI | GGCC | 4 cut(s) | 427, 2926, 3462, 3663 |
| BtgI | CCRYGG | 3 cut(s) | 747, 2927, 3309 |
| BtrI | CACGTC | 1 cut(s) | 2112 |
| BtsI | GCAGTG | 4 cut(s) | 169, 252, 341, 3175 |
| BtsIMutI | CAGTG | 9 cut(s) | 169, 252, 341, 863, 1162, 2712, 3147, 3175, 3214 |
| BveI | ACCTGC | 2 cut(s) | 3401, 3707 |
| Cac8I | GCNNGC | 6 cut(s) | 704, 1118, 1151, 2066, 2824, 3133 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2018 |
| CfoI | GCGC | 1 cut(s) | 3353 |
| Cfr10I | RCCGGY | 1 cut(s) | 2786 |
| Cfr13I | GGNCC | 6 cut(s) | 735, 1315, 3123, 3204, 3661, 3662 |
| Cfr42I | CCGCGG | 1 cut(s) | 2930 |
| CseI | GACGC | 2 cut(s) | 357, 1841 |
| CsiI | ACCWGGT | 2 cut(s) | 2901, 3646 |
| Csp6I | GTAC | 5 cut(s) | 1556, 2001, 2107, 2176, 2180 |
| CspAI | ACCGGT | 1 cut(s) | 2786 |
| CviQI | GTAC | 5 cut(s) | 1556, 2001, 2107, 2176, 2180 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1408 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1408 |
| EaeI | YGGCCR | 1 cut(s) | 3460 |
| Eam1104I | CTCTTC | 5 cut(s) | 69, 525, 1191, 2054, 2321 |
| EarI | CTCTTC | 5 cut(s) | 69, 525, 1191, 2054, 2321 |
| Eco105I | TACGTA | 1 cut(s) | 2179 |
| Eco130I | CCWWGG | 5 cut(s) | 255, 492, 2850, 3309, 3655 |
| Eco147I | AGGCCT | 1 cut(s) | 427 |
| Eco24I | GRGCYC | 3 cut(s) | 180, 3078, 3665 |
| Eco31I | GGTCTC | 2 cut(s) | 2541, 3036 |
| Eco47I | GGWCC | 4 cut(s) | 735, 1315, 3123, 3204 |
| Eco57I | CTGAAG | 2 cut(s) | 1020, 2025 |
| Eco81I | CCTNAGG | 2 cut(s) | 731, 3571 |
| Eco88I | CYCGRG | 4 cut(s) | 179, 236, 795, 1094 |
| Eco91I | GGTNACC | 3 cut(s) | 2870, 2888, 3650 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| EcoO109I | RGGNCCY | 3 cut(s) | 735, 3661, 3662 |
| EcoO65I | GGTNACC | 3 cut(s) | 2870, 2888, 3650 |
| EcoRI | GAATTC | 2 cut(s) | 1513, 3709 |
| EcoRII | CCWGG | 4 cut(s) | 2563, 2901, 3632, 3646 |
| EcoT14I | CCWWGG | 5 cut(s) | 255, 492, 2850, 3309, 3655 |
| EcoT22I | ATGCAT | 2 cut(s) | 1897, 3102 |
| EcoT38I | GRGCYC | 3 cut(s) | 180, 3078, 3665 |
| ErhI | CCWWGG | 5 cut(s) | 255, 492, 2850, 3309, 3655 |
| FaqI | GGGAC | 3 cut(s) | 1328, 1396, 2844 |
| FbaI | TGATCA | 2 cut(s) | 448, 2379 |
| FblI | GTMKAC | 1 cut(s) | 63 |
| FriOI | GRGCYC | 3 cut(s) | 180, 3078, 3665 |
| FspBI | CTAG | 7 cut(s) | 1353, 1623, 1800, 3009, 3222, 3407, 3473 |
| GlaI | GCGC | 1 cut(s) | 3352 |
| GsaI | CCCAGC | 1 cut(s) | 3081 |
| GsuI | CTGGAG | 2 cut(s) | 263, 1028 |
| HaeIII | GGCC | 4 cut(s) | 427, 2926, 3462, 3663 |
| HapII | CCGG | 4 cut(s) | 2363, 2787, 3681, 3706 |
| HgaI | GACGC | 2 cut(s) | 357, 1841 |
| HhaI | GCGC | 1 cut(s) | 3353 |
| Hin1I | GRCGYC | 1 cut(s) | 368 |
| Hin6I | GCGC | 1 cut(s) | 3351 |
| HinP1I | GCGC | 1 cut(s) | 3351 |
| HincII | GTYRAC | 2 cut(s) | 1339, 3487 |
| HindII | GTYRAC | 2 cut(s) | 1339, 3487 |
| HindIII | AAGCTT | 5 cut(s) | 584, 1451, 2066, 2249, 3694 |
| HpaII | CCGG | 4 cut(s) | 2363, 2787, 3681, 3706 |
| HphI | GGTGA | 8 cut(s) | 131, 458, 1532, 1597, 2366, 2882, 3662, 3680 |
| Hpy166II | GTNNAC | 7 cut(s) | 64, 1339, 1662, 2109, 2203, 3453, 3487 |
| Hpy8I | GTNNAC | 7 cut(s) | 64, 1339, 1662, 2109, 2203, 3453, 3487 |
| HpyCH4IV | ACGT | 4 cut(s) | 2111, 2178, 3427, 3455 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 283, 433, 2024, 2101, 2420, 2455, 3073 |
| HpySE526I | ACGT | 4 cut(s) | 2111, 2178, 3427, 3455 |
| Hsp92I | GRCGYC | 1 cut(s) | 368 |
| HspAI | GCGC | 1 cut(s) | 3351 |
| Ksp22I | TGATCA | 2 cut(s) | 448, 2379 |
| KspI | CCGCGG | 1 cut(s) | 2930 |
| LguI | GCTCTTC | 3 cut(s) | 69, 525, 2054 |
| LmnI | GCTCC | 7 cut(s) | 282, 294, 887, 2032, 2172, 2469, 3682 |
| MabI | ACCWGGT | 2 cut(s) | 2901, 3646 |
| MaeI | CTAG | 7 cut(s) | 1353, 1623, 1800, 3009, 3222, 3407, 3473 |
| MaeII | ACGT | 4 cut(s) | 2111, 2178, 3427, 3455 |
| MflI | RGATCY | 6 cut(s) | 1090, 1676, 1792, 2567, 2843, 3379 |
| MhlI | GDGCHC | 5 cut(s) | 180, 2029, 3078, 3640, 3665 |
| MlsI | TGGCCA | 1 cut(s) | 3462 |
| MluNI | TGGCCA | 1 cut(s) | 3462 |
| MlyI | GAGTC | 9 cut(s) | 466, 647, 761, 1040, 1418, 2644, 3187, 3332, 3482 |
| MmeI | TCCRAC | 1 cut(s) | 3418 |
| Mox20I | TGGCCA | 1 cut(s) | 3462 |
| Mph1103I | ATGCAT | 2 cut(s) | 1897, 3102 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1453, 2312 |
| MscI | TGGCCA | 1 cut(s) | 3462 |
| MseI | TTAA | 6 cut(s) | 525, 1323, 1593, 1823, 1976, 2409 |
| MslI | CAYNNNNRTG | 5 cut(s) | 162, 2135, 2198, 2237, 3314 |
| Msp20I | TGGCCA | 1 cut(s) | 3462 |
| MspA1I | CMGCKG | 2 cut(s) | 2929, 3052 |
| MspI | CCGG | 4 cut(s) | 2363, 2787, 3681, 3706 |
| MspR9I | CCNGG | 5 cut(s) | 2565, 2903, 3634, 3648, 3681 |
| Mva1269I | GAATGC | 1 cut(s) | 364 |
| MvaI | CCWGG | 4 cut(s) | 2565, 2903, 3634, 3648 |
| MvnI | CGCG | 2 cut(s) | 2929, 3351 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 283, 433, 2024, 2101, 2420, 2455, 3073 |
| NciI | CCSGG | 1 cut(s) | 3681 |
| NcoI | CCATGG | 1 cut(s) | 3309 |
| NmeAIII | GCCGAG | 2 cut(s) | 312, 3514 |
| NmuCI | GTSAC | 6 cut(s) | 2608, 2684, 2888, 3160, 3190, 3650 |
| NsiI | ATGCAT | 2 cut(s) | 1897, 3102 |
| NspI | RCATGY | 5 cut(s) | 415, 1044, 1820, 3511, 3625 |
| NspV | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| OliI | CACNNNNGTG | 2 cut(s) | 2135, 2198 |
| PaeR7I | CTCGAG | 1 cut(s) | 179 |
| PasI | CCCWGGG | 1 cut(s) | 3633 |
| PceI | AGGCCT | 1 cut(s) | 427 |
| PciI | ACATGT | 3 cut(s) | 1040, 3507, 3621 |
| PciSI | GCTCTTC | 3 cut(s) | 69, 525, 2054 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1453, 2312 |
| Pfl23II | CGTACG | 1 cut(s) | 2175 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3590 |
| PfoI | TCCNGGA | 1 cut(s) | 2563 |
| PinAI | ACCGGT | 1 cut(s) | 2786 |
| PleI | GAGTC | 9 cut(s) | 465, 646, 761, 1039, 1417, 2643, 3187, 3332, 3482 |
| PpsI | GAGTC | 9 cut(s) | 465, 646, 761, 1039, 1417, 2643, 3187, 3332, 3482 |
| Ppu21I | YACGTR | 3 cut(s) | 2179, 3428, 3456 |
| PpuMI | RGGWCCY | 1 cut(s) | 735 |
| PscI | ACATGT | 3 cut(s) | 1040, 3507, 3621 |
| PsiI | TTATAA | 3 cut(s) | 192, 512, 2052 |
| Psp5II | RGGWCCY | 1 cut(s) | 735 |
| Psp6I | CCWGG | 4 cut(s) | 2563, 2901, 3632, 3646 |
| PspEI | GGTNACC | 3 cut(s) | 2870, 2888, 3650 |
| PspFI | CCCAGC | 1 cut(s) | 3077 |
| PspGI | CCWGG | 4 cut(s) | 2563, 2901, 3632, 3646 |
| PspLI | CGTACG | 1 cut(s) | 2175 |
| PspOMI | GGGCCC | 1 cut(s) | 3661 |
| PspPI | GGNCC | 6 cut(s) | 735, 1315, 3123, 3204, 3661, 3662 |
| PspPPI | RGGWCCY | 1 cut(s) | 735 |
| PstI | CTGCAG | 2 cut(s) | 2000, 2451 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2018 |
| PsuI | RGATCY | 6 cut(s) | 1090, 1676, 1792, 2567, 2843, 3379 |
| RsaI | GTAC | 5 cut(s) | 1557, 2002, 2108, 2177, 2181 |
| RsaNI | GTAC | 5 cut(s) | 1556, 2001, 2107, 2176, 2180 |
| RseI | CAYNNNNRTG | 5 cut(s) | 162, 2135, 2198, 2237, 3314 |
| SacII | CCGCGG | 1 cut(s) | 2930 |
| SapI | GCTCTTC | 3 cut(s) | 69, 525, 2054 |
| SaqAI | TTAA | 6 cut(s) | 525, 1323, 1593, 1823, 1976, 2409 |
| Sau96I | GGNCC | 6 cut(s) | 735, 1315, 3123, 3204, 3661, 3662 |
| ScaI | AGTACT | 1 cut(s) | 2002 |
| SchI | GAGTC | 9 cut(s) | 466, 647, 761, 1040, 1418, 2644, 3187, 3332, 3482 |
| ScrFI | CCNGG | 5 cut(s) | 2565, 2903, 3634, 3648, 3681 |
| SduI | GDGCHC | 5 cut(s) | 180, 2029, 3078, 3640, 3665 |
| SexAI | ACCWGGT | 2 cut(s) | 2901, 3646 |
| SfcI | CTRYAG | 5 cut(s) | 576, 1914, 1985, 1996, 2447 |
| Sfr274I | CTCGAG | 1 cut(s) | 179 |
| Sfr303I | CCGCGG | 1 cut(s) | 2930 |
| SfuI | TTCGAA | 3 cut(s) | 47, 224, 1966 |
| SgrBI | CCGCGG | 1 cut(s) | 2930 |
| SinI | GGWCC | 4 cut(s) | 735, 1315, 3123, 3204 |
| SlaI | CTCGAG | 1 cut(s) | 179 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 162, 2135, 2198, 2237, 3314 |
| SmlI | CTYRAG | 2 cut(s) | 179, 2252 |
| SmoI | CTYRAG | 2 cut(s) | 179, 2252 |
| SnaBI | TACGTA | 1 cut(s) | 2179 |
| SpeI | ACTAGT | 1 cut(s) | 1352 |
| SseBI | AGGCCT | 1 cut(s) | 427 |
| SsiI | CCGC | 7 cut(s) | 608, 1778, 1971, 2104, 2927, 2929, 3052 |
| SspMI | CTAG | 7 cut(s) | 1353, 1623, 1800, 3009, 3222, 3407, 3473 |
| StuI | AGGCCT | 1 cut(s) | 427 |
| StyD4I | CCNGG | 5 cut(s) | 2563, 2901, 3632, 3646, 3679 |
| StyI | CCWWGG | 5 cut(s) | 255, 492, 2850, 3309, 3655 |
| TaiI | ACGT | 4 cut(s) | 2114, 2181, 3430, 3458 |
| TaqI | TCGA | 7 cut(s) | 47, 180, 224, 503, 1439, 1966, 2148 |
| TaqII | GACCGA | 1 cut(s) | 2108 |
| TatI | WGTACW | 1 cut(s) | 2000 |
| TauI | GCSGC | 2 cut(s) | 1781, 2929 |
| Tru1I | TTAA | 6 cut(s) | 525, 1323, 1593, 1823, 1976, 2409 |
| Tru9I | TTAA | 6 cut(s) | 525, 1323, 1593, 1823, 1976, 2409 |
| TscAI | CASTG | 9 cut(s) | 169, 252, 341, 863, 1162, 2712, 3154, 3175, 3214 |
| TseFI | GTSAC | 6 cut(s) | 2608, 2684, 2888, 3160, 3190, 3650 |
| Tsp45I | GTSAC | 6 cut(s) | 2608, 2684, 2888, 3160, 3190, 3650 |
| TspGWI | ACGGA | 1 cut(s) | 1356 |
| TspRI | CASTG | 9 cut(s) | 169, 252, 341, 863, 1162, 2712, 3154, 3175, 3214 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3590 |
| VpaK11BI | GGWCC | 4 cut(s) | 735, 1315, 3123, 3204 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1138 |
| XapI | RAATTY | 4 cut(s) | 1325, 1513, 1729, 3709 |
| XceI | RCATGY | 5 cut(s) | 415, 1044, 1820, 3511, 3625 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2628, 2882, 3587 |
| XhoI | CTCGAG | 1 cut(s) | 179 |
| XmiI | GTMKAC | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1453, 2312 |
| XspI | CTAG | 7 cut(s) | 1353, 1623, 1800, 3009, 3222, 3407, 3473 |
| ZrmI | AGTACT | 1 cut(s) | 2002 |
| Zsp2I | ATGCAT | 2 cut(s) | 1897, 3102 |