Rmu_sc0008208.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008208.1
OG0000042
Physical Location & Seq
Forward (+)
5208 .. 11917
6710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008208.1_g000001.1.cds

Sequence Viewer

Length: 4545 bp
atggagtttcttctttcaattgttggaaagattgctaagtacacagttgccccagttgcacgccaagtgggttacctaatccattacaacaggaacctcacaaaattacagagtcaatctgaagaagtgtgcagcatacctactaaagataacgaggcgttctcttccaggatctcagtcgtgaaggaaatcatggatgaactgagaaattctaagatttgcatgattggggtatatggtattgggggtgttgggaaatccacacttgtcaaacaagtttatcggcaagttacagaacatgagaagttgtttgatgatgtagttttggtactagatgtgaagaagaatccaagcattgaaagacttcaaaaagagattgctgagaacctaggtgtggagcatcgtgagaatgaaacagaagctaaaagagcacggcatttatgtgacaggataaaaggcaagaagatgcttctaattttagatgatgtttgcgaaagaattgacttggaggctgtggggtttccttccttgtcaactcttaaaatacttttgacatcacggagtcgaagagtattatcttctgatatgggtacacaaaaagagtttcctcttgactttttagacgaaaaagaaacttggactttgtttgagaagatgtcaggtgagattgttaaaaatgttgctatacaaagtatagcaaccaaagtagccaaaaggtgcggaggtttgccagtattggttgttacagttgcaagagctctaaaaaatggtacaatacatgaatggaaagatgccctcagacgcctaaaaaagttcgatggacaaggattgacagagaaagcatactctgctattgagtggagttacaatagattggataatgaggagctcaaatcattgttcatgctttgtggagttgtggttggtgccttcaacactttttcgatctctgacttgtggaaatatagtatgggtttgggtttgttaaaagatgtcgacacagtaggagaagcgtgggatgcattttgttcgatgattgaacaactcaagtactcttgtctattgctagagagtgatgataatacgtgtgttagaatacatgatcttgtaaaagatgttgctaagaggattgcttctagagagcaacacgtcttatcaatatctcctggaagtgagttgaaagaatggccagacaaggatttctgttcaaagtgcactatgatctgtcttaaccaatgtgatatccccgagtttcctgaagttttgcaatgtcaagaactgacactgttttttttagataatgaagtccgggaaatcccatgcaatctttttagagagatgaaaaaactgagggtgttggatttaactagattcagtatcccgtcgctaccttcatctcttcaattcctaaaaagtcttcaaacattgtgtttggatcaatgcacattgggagatgtaactctaatcggacagctacaaaacttggaaattctcagctttctaaagtccaaattcaaagagttgcccaaagaaattgggctactgacacgtctgcgattgttggatttgactagctgctctcaactcgaagtgatttcccctaatgttatatcaagcttgacaagattagagcacttgagaatgagaaatagttttaaccggtgggaggccggagaagtcatcgacacagaaataagtaatgcaaatcttgaagaactaaagaacttgcctcacctaaccgaattacaactacatatcacaaatgctaacattcttccaccagatttgttcactggttgtaagctagagagattccaaatatgtattggttctgtgtggaaatgggatgatgtggatgaagccatcaatgcactaaagctccagctcactgccagcaatcaatttgaccaaggactagcaacattgctaaagagaactgaagacttgtacttggaggggatggagggtgtttatagcagtattttatatcaactaggtgctgaagattctcacaaactgaagcatctgcatgtccaaaacaatgttgaatttaccaactttttgtctatcataaacgggaaggattcattccccaacttggaatttttggggttggacgtacgggagaattggggtagtgtgccactccacttgcttatgaagctaaaatctctttgtacctgtgcatatacgaactcctctttgaattcccttgagaaattacttggtcttgaaaaagtcaatagagaaatacatacagttagggatgggaccctcccacatttaagagagttgtacctttacgggatgcggaagctgatgaatcttggggaggatagcttcggaccagtatgcccatattttccaaatctggaaattcttaagctagaggattgtgacagcttgaagaatctaagatcacccacaatatcctataagaatctaacagctttgcaagtaagtcgttgtaagggattgaaatacttgatatctttctccatggccaaaagtttgttgcatctcacaaaactggaagtccaggattgtgaggaaatgatagaaatagtggggagcaatgaaaatgatgatttagaaaatgagattgaattcaaggtgttgaaacatttgaaactttctgctctaccaagtttaagaggcttttgctcgggaactcgtattgttaaatttccatctttggaaaaattatccgtgagttgtactcaactggagacgttcatctttgattctatgggtaaaagtaatacaattggccaggacatcaaagacaccgactcaagcgaaaaccgtgagattgaagtagtgcaaccttttctttttgacaacaaggttgaatttcctagcttgaaaagtttgtctctcaagcgtttgacaaagttgaccacaatatggcatagtcaactttctctaaactccttcagtagactcaaagaccttgaagtacgtggatgtggaaatttaataaatatctttgtgcccagtactataggaagattgagtgttcttgagaccttattgataaagaagtgcaagtctgtacaagatgtatttgaacttggaggaattgatgttagaggaatacatgacacgtcagctgcaactcagctgagatcttttgactgtcaaaatctagaatcagttgaaattgattcttgtgagaatttgaaaaacattttccctgtttcagtggctagaaatcttcaacagttaacaaggctgatagtgatgaactgtggagtggaggaaatcattgcaagagaggagggactacaaacaacacccaagtttgtgtttccaaaagtaacaatagtgatttttaggaatatgtcccaactcacgaatttctactcagggatgcatgtgtccgtctggccattacttaatgtgttgggggtggtagaatgtgctaaagtcaaagtgtttgccgaggaaatctcaaattttcaaggacataatgagtcagaacgtctcagtgttcttacgaactgtggagtggaggaaatcattgcaagagaggagggactacaaacaacacctaagtttgtgtttccaaaagtaacaatagtgatttttaggaatatgtcccaactcacgaatttctacccagggatgcatgtgtccgtctggccattacttaatgtgttgggggtggtagaatgtgctaaagtcaaagtgtttgccgaggaaatctcaaattttcaaggatataatgagtcggaacgtctcagtgttcttatcccgcagtctctctttttaattgagaaggattcatttcccaacttggaatggttgaccgtggaagtaatggagttttcgaatggtccactcccagcagcagcgcagttttttagcaaactaaagtttcttgctgtttgttgtccagagtccatatcagctgttttccttgacaaattactcgacccagaaggaaacagtgcagttgggattgggacccagcagcaacagcagctcccacatttaaaagagttgggacttattcgaatgtacaagctgatgcatctaggcctggatgatgaggaggataactcacaatcagcgccccgcatcccaaattttccaaacctgcaaattctattcgtgaattgttgccacagcttaaggaatctgagatcatccgcaatatccttcaacaatctaacaagtttgcaagtaagtgtttgctacggattgaaatacttgataacttactccatggccaacagtttaatgcaactcacaaaactggaagtcgagggatgcccaatactggtggaaatagtgggaagcaatgaagacggcgattcaagaaatgagattacattcaggcggttgaaacatttgaaactattgggtctaccaagactgcaaggcttttgctccggaaattgcattgctaaattcccgtccttggaaacttcaagcatgagcaaccgcctcaagttgaagattttcacagctcatgaccaaacgctacagctaacaaacgaagaggaagacacagatgtcgatgcttggggtaagtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1514

Amino Acids

171.15

Weight (kDa)

5.77

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 4520
Acc36I ACCTGC 1 cut(s) 4110
AccB1I GGYRCC 1 cut(s) 926
AccB7I CCANNNNNTGG 1 cut(s) 2907
AccI GTMKAC 3 cut(s) 996, 2941, 4372
AccIII TCCGGA 1 cut(s) 4397
AciI CCGC 7 cut(s) 720, 2311, 3758, 4081, 4155, 4345, 4450
AclWI GGATC 2 cut(s) 179, 1443
AcoI YGGCCR 6 cut(s) 1187, 2502, 2770, 3389, 3644, 4233
AcuI CTGAAG 6 cut(s) 141, 1278, 1959, 2022, 2039, 2920
AcyI GRCGYC 1 cut(s) 802
AfiI CCNNNNNNNGG 6 cut(s) 394, 1666, 2098, 2907, 4285, 4426
AflII CTTAAG 2 cut(s) 2381, 4135
AflIII ACRYGT 4 cut(s) 1085, 1147, 1547, 3105
AgeI ACCGGT 1 cut(s) 1659
AjiI CACGTC 3 cut(s) 1150, 1550, 3108
AjnI CCWGG 6 cut(s) 167, 1165, 2538, 2772, 3622, 4044
Alw21I GWGCWC 5 cut(s) 433, 760, 891, 1217, 1635
Alw26I GTCTC 6 cut(s) 2723, 2880, 3020, 3491, 3746, 3768
Alw44I GTGCAC 1 cut(s) 1213
AlwI GGATC 2 cut(s) 179, 1443
Ama87I CYCGRG 2 cut(s) 1247, 2665
Aor13HI TCCGGA 1 cut(s) 4397
AoxI GGCC 8 cut(s) 1187, 1668, 2502, 2770, 3389, 3644, 4042, 4233
ApaLI GTGCAC 1 cut(s) 1213
ApeKI GCWGC 7 cut(s) 132, 1575, 3113, 3851, 3854, 3976, 3985
AsiGI ACCGGT 1 cut(s) 1659
Asp700I GAANNNNTTC 2 cut(s) 363, 4466
AspA2I CCTAGG 1 cut(s) 388
AspLEI GCGC 2 cut(s) 3859, 4078
AspS9I GGNCC 4 cut(s) 2271, 2345, 3839, 3969
AsuC2I CCSGG 1 cut(s) 1310
AsuHPI GGTGA 3 cut(s) 674, 1724, 2412
AsuII TTCGAA 2 cut(s) 3833, 4018
AvaI CYCGRG 2 cut(s) 1247, 2665
AvaII GGWCC 4 cut(s) 2271, 2345, 3839, 3969
AvrII CCTAGG 1 cut(s) 388
BaeGI GKGCMC 2 cut(s) 1217, 2997
BalI TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
BanI GGYRCC 1 cut(s) 926
BanII GRGCYC 2 cut(s) 760, 891
BbsI GAAGAC 4 cut(s) 1409, 1947, 4317, 4518
Bbv12I GWGCWC 5 cut(s) 433, 760, 891, 1217, 1635
BbvI GCAGC 7 cut(s) 144, 1562, 3100, 3863, 3866, 3988, 3997
BccI CCATC 5 cut(s) 812, 1871, 1954, 2261, 2698
BceAI ACGGC 2 cut(s) 449, 4330
BcgI CGANNNNNNTGC 4 cut(s) 1011, 1045, 2444, 2478
BciT130I CCWGG 6 cut(s) 169, 1167, 2540, 2774, 3624, 4046
BciVI GTATCC 1 cut(s) 1388
BcnI CCSGG 1 cut(s) 1310
BcoDI GTCTC 6 cut(s) 2723, 2880, 3020, 3491, 3746, 3768
BfmI CTRYAG 2 cut(s) 3003, 4490
BfoI RGCGCY 1 cut(s) 4079
BfrI CTTAAG 2 cut(s) 2381, 4135
BfuAI ACCTGC 1 cut(s) 4110
BfuI GTATCC 1 cut(s) 1388
BglII AGATCT 1 cut(s) 3128
BisI GCNGC 7 cut(s) 133, 1576, 3114, 3852, 3855, 3977, 3986
BlnI CCTAGG 1 cut(s) 388
BlsI GCNGC 7 cut(s) 134, 1577, 3115, 3853, 3856, 3978, 3987
BmcAI AGTACT 2 cut(s) 1052, 3001
Bme1390I CCNGG 7 cut(s) 169, 1167, 1310, 2540, 2774, 3624, 4046
Bme18I GGWCC 4 cut(s) 2271, 2345, 3839, 3969
BmeT110I CYCGRG 2 cut(s) 1247, 2665
BmgBI CACGTC 3 cut(s) 1150, 1550, 3108
BmgT120I GGNCC 4 cut(s) 2271, 2345, 3839, 3969
BmiI GGNNCC 6 cut(s) 95, 928, 2272, 2273, 3970, 3971
BmrFI CCNGG 7 cut(s) 169, 1167, 1310, 2540, 2774, 3624, 4046
BmrI ACTGGG 2 cut(s) 47, 2991
BmuI ACTGGG 2 cut(s) 47, 2991
BpiI GAAGAC 4 cut(s) 1409, 1947, 4317, 4518
BpmI CTGGAG 2 cut(s) 1865, 2747
Bpu14I TTCGAA 2 cut(s) 3833, 4018
BpuEI CTTGAG 7 cut(s) 1031, 1657, 2234, 2779, 2864, 3044, 4439
BpuMI CCSGG 1 cut(s) 1310
BsaAI YACGTR 2 cut(s) 1086, 2963
BsaHI GRCGYC 1 cut(s) 802
BsaI GGTCTC 1 cut(s) 3020
BsaWI WCCGGW 2 cut(s) 1659, 4397
BsaXI ACNNNNNCTCC 6 cut(s) 906, 936, 1863, 1893, 3972, 4002
Bsc4I CCNNNNNNNGG 6 cut(s) 394, 1666, 2098, 2907, 4285, 4426
Bse118I RCCGGY 1 cut(s) 1659
Bse1I ACTGG 9 cut(s) 53, 731, 1798, 2348, 2535, 2730, 2997, 4266, 4290
Bse3DI GCAATG 7 cut(s) 1274, 1922, 2581, 3267, 3522, 4312, 4407
BseAI TCCGGA 1 cut(s) 4397
BseBI CCWGG 6 cut(s) 169, 1167, 2540, 2774, 3624, 4046
BseLI CCNNNNNNNGG 6 cut(s) 394, 1666, 2098, 2907, 4285, 4426
BseMI GCAATG 7 cut(s) 1274, 1922, 2581, 3267, 3522, 4312, 4407
BseNI ACTGG 9 cut(s) 53, 731, 1798, 2348, 2535, 2730, 2997, 4266, 4290
BseRI GAGGAG 5 cut(s) 899, 2188, 3293, 3548, 4070
BseSI GKGCMC 2 cut(s) 1217, 2997
BseXI GCAGC 7 cut(s) 144, 1562, 3100, 3863, 3866, 3988, 3997
BseYI CCCAGC 2 cut(s) 3847, 3972
BsgI GTGCAG 2 cut(s) 151, 3975
BshFI GGCC 8 cut(s) 1189, 1670, 2504, 2772, 3391, 3646, 4044, 4235
BshNI GGYRCC 1 cut(s) 926
BshTI ACCGGT 1 cut(s) 1659
BsiHKAI GWGCWC 5 cut(s) 433, 760, 891, 1217, 1635
BsiHKCI CYCGRG 2 cut(s) 1247, 2665
BsiSI CCGG 4 cut(s) 1309, 1660, 1671, 4398
BsiWI CGTACG 1 cut(s) 2119
BslFI GGGAC 7 cut(s) 2284, 3297, 3331, 3552, 3586, 3982, 4023
BslI CCNNNNNNNGG 6 cut(s) 394, 1666, 2098, 2907, 4285, 4426
BsmAI GTCTC 6 cut(s) 2723, 2880, 3020, 3491, 3746, 3768
BsmBI CGTCTC 3 cut(s) 2723, 3491, 3746
BsmFI GGGAC 7 cut(s) 2284, 3297, 3331, 3552, 3586, 3982, 4023
BsnI GGCC 8 cut(s) 1189, 1670, 2504, 2772, 3391, 3646, 4044, 4235
Bso31I GGTCTC 1 cut(s) 3020
BsoBI CYCGRG 2 cut(s) 1247, 2665
Bsp119I TTCGAA 2 cut(s) 3833, 4018
Bsp1286I GDGCHC 6 cut(s) 433, 760, 891, 1217, 1635, 2997
Bsp13I TCCGGA 1 cut(s) 4397
Bsp1407I TGTACA 2 cut(s) 3055, 4023
Bsp143I GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
Bsp19I CCATGG 2 cut(s) 2499, 4230
BspACI CCGC 7 cut(s) 720, 2311, 3758, 4081, 4155, 4345, 4450
BspANI GGCC 8 cut(s) 1189, 1670, 2504, 2772, 3391, 3646, 4044, 4235
BspEI TCCGGA 1 cut(s) 4397
BspHI TCATGA 1 cut(s) 4477
BspLI GGNNCC 6 cut(s) 95, 928, 2272, 2273, 3970, 3971
BspMI ACCTGC 1 cut(s) 4110
BspPI GGATC 2 cut(s) 179, 1443
BspT104I TTCGAA 2 cut(s) 3833, 4018
BspT107I GGYRCC 1 cut(s) 926
BspTI CTTAAG 2 cut(s) 2381, 4135
BspTNI GGTCTC 1 cut(s) 3020
BsrDI GCAATG 7 cut(s) 1274, 1922, 2581, 3267, 3522, 4312, 4407
BsrFI RCCGGY 1 cut(s) 1659
BsrGI TGTACA 2 cut(s) 3055, 4023
BsrI ACTGG 9 cut(s) 53, 731, 1798, 2348, 2535, 2730, 2997, 4266, 4290
BssAI RCCGGY 1 cut(s) 1659
BssMI GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
BssNI GRCGYC 1 cut(s) 802
BssT1I CCWWGG 5 cut(s) 388, 1909, 2499, 4230, 4425
Bst2UI CCWGG 6 cut(s) 169, 1167, 2540, 2774, 3624, 4046
Bst6I CTCTTC 4 cut(s) 169, 562, 1404, 4500
BstACI GRCGYC 1 cut(s) 802
BstAFI CTTAAG 2 cut(s) 2381, 4135
BstAPI GCANNNNNTGC 1 cut(s) 848
BstAUI TGTACA 2 cut(s) 3055, 4023
BstBAI YACGTR 2 cut(s) 1086, 2963
BstBI TTCGAA 2 cut(s) 3833, 4018
BstC8I GCNNGC 2 cut(s) 61, 1894
BstDSI CCRYGG 3 cut(s) 2499, 3813, 4230
BstEII GGTNACC 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 4079
BstHHI GCGC 2 cut(s) 3859, 4078
BstKTI GATC 8 cut(s) 174, 948, 1105, 1224, 1438, 2420, 3131, 4151
BstMAI GTCTC 6 cut(s) 2723, 2880, 3020, 3491, 3746, 3768
BstMBI GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
BstMWI GCNNNNNNNGC 8 cut(s) 56, 428, 848, 1019, 1868, 2161, 3982, 3985
BstNI CCWGG 6 cut(s) 169, 1167, 2540, 2774, 3624, 4046
BstNSI RCATGY 3 cut(s) 2033, 3380, 3635
BstPI GGTNACC 1 cut(s) 71
BstSCI CCNGG 7 cut(s) 167, 1165, 1308, 2538, 2772, 3622, 4044
BstSFI CTRYAG 2 cut(s) 3003, 4490
BstSLI GKGCMC 2 cut(s) 1217, 2997
BstV1I GCAGC 7 cut(s) 144, 1562, 3100, 3863, 3866, 3988, 3997
BstV2I GAAGAC 4 cut(s) 1409, 1947, 4317, 4518
BstX2I RGATCY 2 cut(s) 171, 3128
BstYI RGATCY 2 cut(s) 171, 3128
BsuI GTATCC 1 cut(s) 1388
BsuRI GGCC 8 cut(s) 1189, 1670, 2504, 2772, 3391, 3646, 4044, 4235
BtgI CCRYGG 3 cut(s) 2499, 3813, 4230
BtrI CACGTC 3 cut(s) 1150, 1550, 3108
BtsI GCAGTG 1 cut(s) 1887
BtsIMutI CAGTG 7 cut(s) 1283, 1791, 1887, 3210, 3496, 3751, 3958
BveI ACCTGC 1 cut(s) 4110
Cac8I GCNNGC 2 cut(s) 61, 1894
CciI TCATGA 1 cut(s) 4477
CfoI GCGC 2 cut(s) 3859, 4078
Cfr10I RCCGGY 1 cut(s) 1659
Cfr13I GGNCC 4 cut(s) 2271, 2345, 3839, 3969
CseI GACGC 1 cut(s) 810
CspAI ACCGGT 1 cut(s) 1659
CspCI CAANNNNNGTGG 6 cut(s) 1767, 1802, 2133, 2168, 4269, 4304
DpnI GATC 8 cut(s) 173, 947, 1104, 1223, 1437, 2419, 3130, 4150
DpnII GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
DraI TTTAAA 1 cut(s) 3999
DrdI GACNNNNNNGTC 1 cut(s) 4520
DseDI GACNNNNNNGTC 1 cut(s) 4520
EaeI YGGCCR 6 cut(s) 1187, 2502, 2770, 3389, 3644, 4233
Eam1104I CTCTTC 4 cut(s) 169, 562, 1404, 4500
EarI CTCTTC 4 cut(s) 169, 562, 1404, 4500
Ecl136II GAGCTC 2 cut(s) 758, 889
Eco130I CCWWGG 5 cut(s) 388, 1909, 2499, 4230, 4425
Eco147I AGGCCT 1 cut(s) 4044
Eco24I GRGCYC 2 cut(s) 760, 891
Eco31I GGTCTC 1 cut(s) 3020
Eco32I GATATC 2 cut(s) 1243, 2490
Eco47I GGWCC 4 cut(s) 2271, 2345, 3839, 3969
Eco53kI GAGCTC 2 cut(s) 758, 889
Eco57I CTGAAG 6 cut(s) 141, 1278, 1959, 2022, 2039, 2920
Eco88I CYCGRG 2 cut(s) 1247, 2665
Eco91I GGTNACC 1 cut(s) 71
EcoICRI GAGCTC 2 cut(s) 758, 889
EcoO109I RGGNCCY 2 cut(s) 2271, 3969
EcoO65I GGTNACC 1 cut(s) 71
EcoRI GAATTC 2 cut(s) 2206, 2606
EcoRII CCWGG 6 cut(s) 167, 1165, 2538, 2772, 3622, 4044
EcoRV GATATC 2 cut(s) 1243, 2490
EcoT14I CCWWGG 5 cut(s) 388, 1909, 2499, 4230, 4425
EcoT22I ATGCAT 4 cut(s) 1024, 3378, 3633, 4038
EcoT38I GRGCYC 2 cut(s) 760, 891
ErhI CCWWGG 5 cut(s) 388, 1909, 2499, 4230, 4425
Esp3I CGTCTC 3 cut(s) 2723, 3491, 3746
FaqI GGGAC 7 cut(s) 2284, 3297, 3331, 3552, 3586, 3982, 4023
FauI CCCGC 2 cut(s) 3765, 4088
FblI GTMKAC 3 cut(s) 996, 2941, 4372
Fnu4HI GCNGC 7 cut(s) 133, 1576, 3114, 3852, 3855, 3977, 3986
FriOI GRGCYC 2 cut(s) 760, 891
Fsp4HI GCNGC 7 cut(s) 133, 1576, 3114, 3852, 3855, 3977, 3986
GlaI GCGC 2 cut(s) 3858, 4077
GluI GCNGC 7 cut(s) 133, 1576, 3114, 3852, 3855, 3977, 3986
GsaI CCCAGC 2 cut(s) 3851, 3976
GsuI CTGGAG 2 cut(s) 1865, 2747
HaeII RGCGCY 1 cut(s) 4079
HaeIII GGCC 8 cut(s) 1189, 1670, 2504, 2772, 3391, 3646, 4044, 4235
HapII CCGG 4 cut(s) 1309, 1660, 1671, 4398
HgaI GACGC 1 cut(s) 810
HhaI GCGC 2 cut(s) 3859, 4078
Hin1I GRCGYC 1 cut(s) 802
Hin6I GCGC 2 cut(s) 3857, 4076
HinP1I GCGC 2 cut(s) 3857, 4076
HincII GTYRAC 6 cut(s) 534, 997, 2898, 2918, 3228, 3810
HindII GTYRAC 6 cut(s) 534, 997, 2898, 2918, 3228, 3810
HindIII AAGCTT 1 cut(s) 1615
HpaI GTTAAC 1 cut(s) 3228
HpaII CCGG 4 cut(s) 1309, 1660, 1671, 4398
HphI GGTGA 3 cut(s) 674, 1724, 2412
Hpy188I TCNGA 9 cut(s) 121, 583, 800, 952, 1469, 2345, 3481, 3736, 4146
Hpy99I CGWCG 1 cut(s) 1387
HpyAV CCTTC 9 cut(s) 178, 534, 940, 1401, 2074, 2944, 3775, 3938, 4174
HpyCH4IV ACGT 9 cut(s) 1085, 1149, 1549, 2118, 2732, 2962, 3107, 3484, 3739
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 428, 848, 1019, 1868, 2161, 3982, 3985
HpySE526I ACGT 9 cut(s) 1085, 1149, 1549, 2118, 2732, 2962, 3107, 3484, 3739
Hsp92I GRCGYC 1 cut(s) 802
HspAI GCGC 2 cut(s) 3857, 4076
KflI GGGWCCC 2 cut(s) 2271, 3969
Kpn2I TCCGGA 1 cut(s) 4397
KspAI GTTAAC 1 cut(s) 3228
Kzo9I GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
LmnI GCTCC 6 cut(s) 397, 886, 1884, 2571, 3993, 4400
Lsp1109I GCAGC 7 cut(s) 144, 1562, 3100, 3863, 3866, 3988, 3997
MaeII ACGT 9 cut(s) 1085, 1149, 1549, 2118, 2732, 2962, 3107, 3484, 3739
MaeIII GTNAC 9 cut(s) 71, 289, 443, 742, 863, 1456, 2396, 3319, 3574
MalI GATC 8 cut(s) 173, 947, 1104, 1223, 1437, 2419, 3130, 4150
MboI GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
MfeI CAATTG 2 cut(s) 18, 2766
MflI RGATCY 2 cut(s) 171, 3128
MhlI GDGCHC 6 cut(s) 433, 760, 891, 1217, 1635, 2997
MlsI TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
MluNI TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
MlyI GAGTC 7 cut(s) 121, 571, 2786, 2937, 3485, 3740, 3911
MmeI TCCRAC 5 cut(s) 4, 1338, 1542, 2094, 3714
Mox20I TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
Mph1103I ATGCAT 4 cut(s) 1024, 3378, 3633, 4038
MroI TCCGGA 1 cut(s) 4397
MroXI GAANNNNTTC 2 cut(s) 363, 4466
MscI TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
MslI CAYNNNNRTG 2 cut(s) 441, 2028
Msp20I TGGCCA 6 cut(s) 1189, 2504, 2772, 3391, 3646, 4235
MspA1I CMGCKG 3 cut(s) 3113, 3124, 3914
MspCI CTTAAG 2 cut(s) 2381, 4135
MspI CCGG 4 cut(s) 1309, 1660, 1671, 4398
MspR9I CCNGG 7 cut(s) 169, 1167, 1310, 2540, 2774, 3624, 4046
MunI CAATTG 2 cut(s) 18, 2766
MvaI CCWGG 6 cut(s) 169, 1167, 2540, 2774, 3624, 4046
MwoI GCNNNNNNNGC 8 cut(s) 56, 428, 848, 1019, 1868, 2161, 3982, 3985
NciI CCSGG 1 cut(s) 1310
NcoI CCATGG 2 cut(s) 2499, 4230
NdeII GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
NlaIV GGNNCC 6 cut(s) 95, 928, 2272, 2273, 3970, 3971
NmeAIII GCCGAG 2 cut(s) 3469, 3724
NmuCI GTSAC 2 cut(s) 443, 2396
NsiI ATGCAT 4 cut(s) 1024, 3378, 3633, 4038
NspI RCATGY 3 cut(s) 2033, 3380, 3635
NspV TTCGAA 2 cut(s) 3833, 4018
PagI TCATGA 1 cut(s) 4477
PasI CCCWGGG 1 cut(s) 3623
PceI AGGCCT 1 cut(s) 4044
PdmI GAANNNNTTC 2 cut(s) 363, 4466
Pfl23II CGTACG 1 cut(s) 2119
PflMI CCANNNNNTGG 1 cut(s) 2907
PfoI TCCNGGA 4 cut(s) 167, 1165, 1308, 2538
PinAI ACCGGT 1 cut(s) 1659
PkrI GCNGC 7 cut(s) 134, 1577, 3115, 3853, 3856, 3978, 3987
PleI GAGTC 7 cut(s) 120, 570, 2786, 2937, 3484, 3739, 3910
PpsI GAGTC 7 cut(s) 120, 570, 2786, 2937, 3484, 3739, 3910
Ppu21I YACGTR 2 cut(s) 1086, 2963
PpuMI RGGWCCY 2 cut(s) 2271, 3969
Psp124BI GAGCTC 2 cut(s) 760, 891
Psp5II RGGWCCY 2 cut(s) 2271, 3969
Psp6I CCWGG 6 cut(s) 167, 1165, 2538, 2772, 3622, 4044
PspEI GGTNACC 1 cut(s) 71
PspFI CCCAGC 2 cut(s) 3847, 3972
PspGI CCWGG 6 cut(s) 167, 1165, 2538, 2772, 3622, 4044
PspLI CGTACG 1 cut(s) 2119
PspN4I GGNNCC 6 cut(s) 95, 928, 2272, 2273, 3970, 3971
PspPI GGNCC 4 cut(s) 2271, 2345, 3839, 3969
PspPPI RGGWCCY 2 cut(s) 2271, 3969
PsuI RGATCY 2 cut(s) 171, 3128
PvuII CAGCTG 3 cut(s) 3113, 3124, 3914
RseI CAYNNNNRTG 2 cut(s) 441, 2028
SacI GAGCTC 2 cut(s) 760, 891
SalI GTCGAC 1 cut(s) 995
SatI GCNGC 7 cut(s) 133, 1576, 3114, 3852, 3855, 3977, 3986
Sau3AI GATC 8 cut(s) 171, 945, 1102, 1221, 1435, 2417, 3128, 4148
Sau96I GGNCC 4 cut(s) 2271, 2345, 3839, 3969
ScaI AGTACT 2 cut(s) 1052, 3001
SchI GAGTC 7 cut(s) 121, 571, 2786, 2937, 3485, 3740, 3911
ScrFI CCNGG 7 cut(s) 169, 1167, 1310, 2540, 2774, 3624, 4046
SduI GDGCHC 6 cut(s) 433, 760, 891, 1217, 1635, 2997
SfcI CTRYAG 2 cut(s) 3003, 4490
SfuI TTCGAA 2 cut(s) 3833, 4018
SinI GGWCC 4 cut(s) 2271, 2345, 3839, 3969
SmiMI CAYNNNNRTG 2 cut(s) 441, 2028
SmlI CTYRAG 9 cut(s) 1046, 1636, 2213, 2381, 2794, 2879, 3023, 4135, 4454
SmoI CTYRAG 9 cut(s) 1046, 1636, 2213, 2381, 2794, 2879, 3023, 4135, 4454
SseBI AGGCCT 1 cut(s) 4044
SsiI CCGC 7 cut(s) 720, 2311, 3758, 4081, 4155, 4345, 4450
SstI GAGCTC 2 cut(s) 760, 891
StuI AGGCCT 1 cut(s) 4044
StyD4I CCNGG 7 cut(s) 167, 1165, 1308, 2538, 2772, 3622, 4044
StyI CCWWGG 5 cut(s) 388, 1909, 2499, 4230, 4425
TaiI ACGT 9 cut(s) 1088, 1152, 1552, 2121, 2735, 2965, 3110, 3487, 3742
TatI WGTACW 7 cut(s) 39, 1050, 1947, 2717, 2999, 3055, 4023
TscAI CASTG 7 cut(s) 1290, 1798, 1894, 3210, 3496, 3751, 3958
TseFI GTSAC 2 cut(s) 443, 2396
TseI GCWGC 7 cut(s) 132, 1575, 3113, 3851, 3854, 3976, 3985
Tsp45I GTSAC 2 cut(s) 443, 2396
TspGWI ACGGA 5 cut(s) 574, 2698, 3373, 3628, 4218
TspRI CASTG 7 cut(s) 1290, 1798, 1894, 3210, 3496, 3751, 3958
Van91I CCANNNNNTGG 1 cut(s) 2907
Vha464I CTTAAG 2 cut(s) 2381, 4135
VneI GTGCAC 1 cut(s) 1213
VpaK11BI GGWCC 4 cut(s) 2271, 2345, 3839, 3969
XbaI TCTAGA 2 cut(s) 1136, 3148
XceI RCATGY 3 cut(s) 2033, 3380, 3635
XcmI CCANNNNNNNNNTGG 1 cut(s) 1823
XmaJI CCTAGG 1 cut(s) 388
XmiI GTMKAC 3 cut(s) 996, 2941, 4372
XmnI GAANNNNTTC 2 cut(s) 363, 4466
ZrmI AGTACT 2 cut(s) 1052, 3001
Zsp2I ATGCAT 4 cut(s) 1024, 3378, 3633, 4038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.