Rw1G023600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000042
Physical Location & Seq
Forward (+)
49534402 .. 49541366
6965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023600.1

Sequence Viewer

Length: 4389 bp
ATGACTCAAGTGAAGAATTTGAGCTTCGCCAGAGATAGAGTAAAGCAACAGGTTGATGAAGCTGATAGAAGAGGTGAGAAAATCCATAATGATGTCCAAAAATGGCTCGATGAAGTGGCTCAGATCATGAAAGACACGGAAGAATTCTTGAAGGGAAAATGCCAAGCAACTGGAGAGCCAAACGAAGTCTTGAAGGATGAAGGCCAAGCAAATGAAGAGCCAAACGAAGTCTTGAAAGATGAACGTCAAGGAAAGCTGAAGCGTCTCCATCAATTTTGTCCTAATCCGAGACTTCGTTATCAACTAAGCAGAAAGTCAACAAAGTTGGTGGAGGCTGTGGATGAACTCTACAAAAGAAAAGACTTCTCTAGTGTTTCATACAGTGTTCGCCCACAAGAGGTATGTGTCATATCTACTGAAGATTATGAGGCATTTGATTCAAGGATCTCAACCTTGAATAAAATCATGGATGAATTGAGAAGTCCCGGTGCCGACATCATTCTAGTGTATGGTATTGGGGGTGTGGGTAAGACCACACTAGTGGAAGAAGTTCTCAGGCAAGTTACGAAAGATAAGTTGTTTGATGATGCAGTCATGGTACGAGATGTGAAATTAAGTCTTGGAGTTTTATCAAACCAGACTATCCCCGGAAGAGCCAATAGCATATGTGATAGAATAAAAGACAAGAAGACTCTTGTGATTTTGGATGATGTCTGGGAAGAAATTGACTTGAAAACTCTCGGGCTTCCCCACATTCCTACTTGTAAAATACTGCTGACCTCTAGAACTCGAAAGATGTTAACTTCTGATAAGATTAAGCAGAGAGGGTTTTTGCTTGGCATTTTAGGCCAAGATGAAACTTGGCTTTTATTTGAGAAGAAAGCAGGTGATGTTACTAAAGATCCCGCTATAAAATCCTTAGCAACTCAAGTAGCCCTAAGATGTGGAGGTTTGCCTGTTTTGGTTATCACAGTAGCAAGAGCTTTAGAAAATAGTTCTTTACCAATGTGGGAAGATGCCCTGAGATGCCTTGTCAGCTTTGATGAGAAAGGAGACTTGACAAAAAAAACTTACTCGGGTCTTGAATGGAGTTACACTCGATTGAATGAGCAGCTTAAGCCATTGTTCTTGTTGTGTGGTACTACTATACAGGGGAACTCTATTTCTTTGACGAACTTATTGAAATATAGTATGGGTTTGGGTTTTTTTAAAGACCTTACAGTTGAAGCAGCTCGAAATGCATTGTACACACAAGTTGATAAACTTAAGAGTTCTTGTCTATTGCTAGACGGAGATGATAATACATGTGTCAGAATGCATGATCTTGTACATGATGTTGCTATCCGGATTGCATCGAAGGATCAACACGTCCTAGTAAAAGATGGAGTTGATCAGCTGAAAGAATGGCCAGACCAAGAATCATTTAAAAGGTGCAGTAAGATCTCCTGGTCCTGTTGCAATATCCCCAGTCTTCCTGAAGTACCTTGGAAATGTCCTGAGCTAGAAATGTTTCTTTTGCATGGTAATGGTAAAGGAAATGAACACCTGATAGAGATTCCGAGCAAATTTTTTGATGAGATGCAAAAACTCAAGGTGTTGGATTTTTGCAATCTGCCTCTTATGTCACTACCTCCATCTCTTGAATTGCTGAAAACCAATCTTCAAACATTGTGTTTAGATGGATGCACGTTGGAAGACATAGCTCGAGTCGGAGAGCTAAGCAACTTGGAAACTCTTAGCTTTGCTAACTCCAAGGTCAAAGAGTTGCCGAAAGAAATAGCGAAATTGACTCATCTGCGGTTGTTGGACTTGTCGGATTGCCCTAAGCTTGAAGTGATTTCACCTAATGTCATATCAAGTTTGACAAGGCTCGAAGACTTGAGAATGAAAAACAGTTTTGAAAAATGGGAGGCTGAGGGAGACATCAACGAAAGAAAGAATGCTAGTCTTTTGGAGCTGAAGCAGTTATCTCGACTAACTGCATTAGAAATATATATTCCAGATGTTGATATTCTTCCACCAAACTTGTTCTCCAATATGCTGAAAAGATATCATATATATATTGGTGGTGTGTGGGAAAGTACGGGGAAGAACACTATGGCTGAAACGACCCTCAATACCCTAAAGCTCGAGCTCACTCCCAGCAATCAATCGGATCAAGGGCTAAGAAGGCTGATGATGAGATCTGAAGATTTGACCTTGGATGTGATGGAAGGTGTTAATAATAGTTTGTATCAATTAGACAACGAAGGTTCTCTGCACCTGAAACGTCTCCAACTCCAAAAGAATGTTGTGTTCCCCAACTTAACAACCTTGAGCATTCAAAAATGTGATCATTTGAGATTCTTGTTCTCATGTTCTATGGCTAAAAGTTTCGTAAAGCTCAAACATCTTGAGATACGCAACTGCAAAAGCATGGAAGAGGTAGTATCATCAACAACAGATTACAATGAAGAAAATATGAATAACTTGTTCTGTAAGCTTGAAACTCTGGAACTGGAAGAACTTCCATGCCTCGGTAGAATCTGCACAGGAGCTCGTATTGAATTTCCGTCCTTGAAGAAGTTGGATATAAGTTATTGTAAAAAATTGAAGGCATTCATCTGTGACCCTATGAGTCATAAAAGTACAAGACTCTGCAAAGAAATTGAAGAGAGGGAGTCAGAGGAGAGCCCAGGTGTTGAACATGAGAGTGTTGCAGAAGGCAACCTTTTTAACGACAAGGTAAGATTTCCTAGCTTGGAGGAATTGAAAATATATCGGTTACCGGAGTTGCAGACAATATGGCACAATAACCAACTTGCTGATCAAGACTGTTTTTGCCGACTCAAACAAGTTGACGTTAGAGATTGCAAGAGTCTGATAAGCATATTTCCGCCTAGTATCATGGGGAGATTGAATGCTCTGGAAAGATTACTGATTATTAAATGCGACTCGCTAAAAGTGGTATTTGAAGTCGGAGGAATTAATGTTGAAGAGACACGTGTCAACAGATCAAACCCTTATGATCAGTGGAAACCTTTGTACTGTCAAAATCTTGAATTCGTGAGCATACGCTTTGCTGGCAGTTTGAAAAATATATTCCCAGCCTCTTTGGCCAGAGGACTTGAGCAGCTACGAATTCTGGGGGTGTCGGATTGTCGTGATCTGCTGGAAATAGTTGGTGAGGAAGAGGGAGGGGTAGAATTACCAACGCCTCCTCAGTTTGTGTTCCCAAAGGCAACAGATGTGGTATTTTTACGTCTGCCCTTCCTCAAGAGTTTTTATCCGGGAAAGCATACTTCCACGTGGCCATTACTCAAAGGTTTGATGGTATCAGAAATTAATGAGGTAGAAATTTCAATCTTTCAGGATAAACATGAGTCGGGCCCAGTAAAGTCTATCTTTCCAATTAACAAGGATTCATTCCCCAACTTGGAAAAATTGGCCGTTGACAACATGAGAATTTGGTACGGTACATCCCCAGTACCAACAGAATCCTTCAGAAACCTAAAATGTGTTACATCTAGTAATTGGGCACATTTCTCCCAGCAAGCTACGTCACTCTTCCTTCAGAAATTACACAATATTGAAAAAATTGAAGTGAATTTTGCTCCTCCTGAAGAAATATTTGTCAGTGAAGGAAACAGTAGTTGTGAGGAAATACATGCAGTTGCGACCCTACCAAGCATACGAATTTTAAAGTTTTACTATTGCGCAATGTTGCATCTAGGGAAGGAGAACTCCGGATCAGGAGGCCCAATTTTTCCAAACTTGGAAGTTCTAGAGGTGACGCGTCATTCTCTCGGATTAAAGAATTTGGAATCATCAGCGATTTCCTTCCGGAATTTAACAACTTTGAAAGTAGTTGATTGTCCGGGCTTGGAACATTTAATAACTTATTCAGTGGCTAAAAGCTTAATGCAACTGACAACAATGGAAGTGAGTGATTGTCCAAGAATTGCAGTCATAGTGACAACAGACGGTGATGATGCAGCAGAAGAGATTACTTTCAGCCGATTGCAAGTTTTAACCCTTCGGAGACTGCCAAAAATGCAAGGCTTTTGCTCCGGAAGTTGCATTGTGAATCTCCCATCCTTGACTACTTTATCCATGAGCAACCGCCTTAAATTGAAGATTTTCCAAGAAAAGCTAAAGATAACAAGCAAGCACTCTGACACGGAGGAGGAGGAGGAAGATAGTGAGGAGGAGGAGGAGGAAGACAGTGTGGATGAGGAAATAGCGAGCCTGCACGCTGCTGCCTCAAGGAGAGCAGTACAGGAGGCCCACCTTGTTTCAGTGGAAGGACGCTCTACTACGTGTTTGAGAAATGGTTGTGGCATTTGTGGAAGCATTGATGCTTTCCGAATGTTCTTTTACTTGACTGGTTTGAAAGTTCCAGCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1462

Amino Acids

165.43

Weight (kDa)

5.65

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 148 - 191 4.4e-06 AAA ATPase domain
NB-ARC PF00931 151 - 297 3.8e-19 NB-ARC domain
LRR_14 PF23598 528 - 809 1.7e-07 Leucine-rich repeat region
LRR_RPS2 PF23247 759 - 867 7e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 910 - 978 4.2e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 914 - 994 3.1e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1008 - 1048 1e-05 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1265 - 1370 1.1e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 875
Acc16I TGCGCA 1 cut(s) 3697
Acc36I ACCTGC 1 cut(s) 875
AccB1I GGYRCC 1 cut(s) 488
AccII CGCG 1 cut(s) 3775
AccIII TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
AciI CCGC 4 cut(s) 906, 1798, 2876, 4102
AclWI GGATC 5 cut(s) 452, 896, 1368, 2163, 3736
AcoI YGGCCR 4 cut(s) 1406, 3096, 3290, 3426
AcuI CTGAAG 8 cut(s) 278, 438, 1497, 1979, 2208, 3466, 3536, 3621
AcvI CACGTG 2 cut(s) 2984, 3288
AfiI CCNNNNNNNGG 3 cut(s) 397, 2516, 3415
AflII CTTAAG 2 cut(s) 1115, 1265
AflIII ACRYGT 6 cut(s) 1304, 1366, 2981, 2983, 3773, 4298
AhlI ACTAGT 1 cut(s) 538
AjiI CACGTC 1 cut(s) 1369
AjnI CCWGG 2 cut(s) 1445, 2674
AleI CACNNNNGTG 1 cut(s) 539
Alw21I GWGCWC 2 cut(s) 2136, 2539
Alw26I GTCTC 7 cut(s) 269, 283, 1047, 1914, 2276, 2972, 4015
AlwI GGATC 5 cut(s) 452, 896, 1368, 2163, 3736
Ama87I CYCGRG 4 cut(s) 740, 1075, 1704, 2129
Aor13HI TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
AoxI GGCC 9 cut(s) 202, 847, 1406, 3096, 3290, 3367, 3426, 3736, 4263
ApaI GGGCCC 1 cut(s) 3371
ApeKI GCWGC 6 cut(s) 1111, 1229, 3112, 3974, 4235, 4238
AseI ATTAAT 2 cut(s) 2967, 3324
Asp700I GAANNNNTTC 5 cut(s) 549, 1509, 2505, 2597, 4118
AspLEI GCGC 1 cut(s) 3698
AspS9I GGNCC 5 cut(s) 1449, 3367, 3368, 3737, 4264
AsuC2I CCSGG 4 cut(s) 486, 648, 3270, 3858
AsuHPI GGTGA 6 cut(s) 86, 899, 1833, 3176, 3781, 3977
AvaI CYCGRG 4 cut(s) 740, 1075, 1704, 2129
AvaII GGWCC 1 cut(s) 1449
BaeGI GKGCMC 2 cut(s) 3371, 3520
BalI TGGCCA 3 cut(s) 1408, 3098, 3292
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 4 cut(s) 2136, 2539, 2675, 3371
BbrPI CACGTG 2 cut(s) 2984, 3288
BbsI GAAGAC 5 cut(s) 695, 1463, 1701, 1881, 4206
Bbv12I GWGCWC 2 cut(s) 2136, 2539
BbvCI CCTCAGC 1 cut(s) 1914
BbvI GCAGC 6 cut(s) 1123, 1241, 3124, 3986, 4222, 4225
BccI CCATC 7 cut(s) 276, 1376, 1642, 1673, 2203, 3304, 4081
BceAI ACGGC 1 cut(s) 3413
BcgI CGANNNNNNTGC 2 cut(s) 1952, 1986
BciT130I CCWGG 2 cut(s) 1447, 2676
BclI TGATCA 4 cut(s) 1390, 2332, 2806, 3007
BcnI CCSGG 4 cut(s) 486, 648, 3270, 3858
BcoDI GTCTC 7 cut(s) 269, 283, 1047, 1914, 2276, 2972, 4015
BcuI ACTAGT 1 cut(s) 538
BfrI CTTAAG 2 cut(s) 1115, 1265
BfuAI ACCTGC 1 cut(s) 875
BglI GCCNNNNNGGC 1 cut(s) 3095
BglII AGATCT 2 cut(s) 1440, 2183
BisI GCNGC 6 cut(s) 1112, 1230, 3113, 3975, 4236, 4239
BlpI GCTNAGC 1 cut(s) 1718
BlsI GCNGC 6 cut(s) 1113, 1231, 3114, 3976, 4237, 4240
Bme1390I CCNGG 6 cut(s) 486, 648, 1447, 2676, 3270, 3858
Bme18I GGWCC 1 cut(s) 1449
BmeT110I CYCGRG 4 cut(s) 740, 1075, 1704, 2129
BmgBI CACGTC 1 cut(s) 1369
BmgT120I GGNCC 5 cut(s) 1449, 3367, 3368, 3737, 4264
BmiI GGNNCC 2 cut(s) 490, 3369
BmrFI CCNGG 6 cut(s) 486, 648, 1447, 2676, 3270, 3858
BmrI ACTGGG 3 cut(s) 1461, 3365, 3458
BmsI GCATC 9 cut(s) 577, 1006, 1016, 1361, 1569, 1673, 3715, 3961, 4327
BmuI ACTGGG 3 cut(s) 1461, 3365, 3458
BoxI GACNNNNGTC 1 cut(s) 2984
BpiI GAAGAC 5 cut(s) 695, 1463, 1701, 1881, 4206
BplI GAGNNNNNCTC 2 cut(s) 1081, 1113
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 4 cut(s) 919, 1497, 1824, 1914
Bpu1102I GCTNAGC 1 cut(s) 1718
BpuEI CTTGAG 8 cut(s) 912, 1574, 1900, 2335, 2414, 3128, 3239, 4228
BpuMI CCSGG 4 cut(s) 486, 648, 3270, 3858
BsaAI YACGTR 3 cut(s) 2984, 3288, 4299
BsaJI CCNNGG 6 cut(s) 646, 1484, 1752, 2199, 2515, 2674
BsaWI WCCGGW 5 cut(s) 1344, 2767, 3725, 3822, 4049
BsaXI ACNNNNNCTCC 2 cut(s) 2015, 2045
Bsc4I CCNNNNNNNGG 3 cut(s) 397, 2516, 3415
Bse1I ACTGG 6 cut(s) 175, 1467, 2502, 3371, 3464, 4369
Bse3DI GCAATG 1 cut(s) 3705
BseAI TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
BseBI CCWGG 2 cut(s) 1447, 2676
BseDI CCNNGG 6 cut(s) 646, 1484, 1752, 2199, 2515, 2674
BseGI GGATG 9 cut(s) 202, 346, 475, 712, 1688, 2209, 3458, 4073, 4216
BseLI CCNNNNNNNGG 3 cut(s) 397, 2516, 3415
BseMI GCAATG 1 cut(s) 3705
BseMII CTCAG 6 cut(s) 134, 568, 1013, 1488, 1905, 3215
BseNI ACTGG 6 cut(s) 175, 1467, 2502, 3371, 3464, 4369
BseSI GKGCMC 2 cut(s) 3371, 3520
BseXI GCAGC 6 cut(s) 1123, 1241, 3124, 3986, 4222, 4225
BseYI CCCAGC 3 cut(s) 2141, 3085, 3528
BsgI GTGCAG 4 cut(s) 1453, 2243, 2512, 4214
Bsh1236I CGCG 1 cut(s) 3775
BshFI GGCC 9 cut(s) 204, 849, 1408, 3098, 3292, 3369, 3428, 3738, 4265
BshNI GGYRCC 1 cut(s) 488
BsiHKAI GWGCWC 2 cut(s) 2136, 2539
BsiHKCI CYCGRG 4 cut(s) 740, 1075, 1704, 2129
BsiSI CCGG 9 cut(s) 486, 648, 1345, 2768, 3269, 3726, 3823, 3857, 4050
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 3 cut(s) 397, 2516, 3415
BsmAI GTCTC 7 cut(s) 269, 283, 1047, 1914, 2276, 2972, 4015
BsmBI CGTCTC 2 cut(s) 269, 2276
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 5 cut(s) 1320, 1945, 2319, 2597, 2905
BsnI GGCC 9 cut(s) 204, 849, 1408, 3098, 3292, 3369, 3428, 3738, 4265
BsoBI CYCGRG 4 cut(s) 740, 1075, 1704, 2129
Bsp120I GGGCCC 1 cut(s) 3367
Bsp1286I GDGCHC 5 cut(s) 2136, 2539, 2675, 3371, 3520
Bsp13I TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
Bsp1407I TGTACA 2 cut(s) 1245, 1327
Bsp1720I GCTNAGC 1 cut(s) 1718
BspACI CCGC 4 cut(s) 906, 1798, 2876, 4102
BspANI GGCC 9 cut(s) 204, 849, 1408, 3098, 3292, 3369, 3428, 3738, 4265
BspCNI CTCAG 6 cut(s) 133, 567, 1014, 1489, 1906, 3214
BspEI TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
BspFNI CGCG 1 cut(s) 3775
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 490, 3369
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 5 cut(s) 452, 896, 1368, 2163, 3736
BspQI GCTCTTC 2 cut(s) 210, 646
BspT107I GGYRCC 1 cut(s) 488
BspTI CTTAAG 2 cut(s) 1115, 1265
BsrDI GCAATG 1 cut(s) 3705
BsrGI TGTACA 2 cut(s) 1245, 1327
BsrI ACTGG 6 cut(s) 175, 1467, 2502, 3371, 3464, 4369
BssECI CCNNGG 6 cut(s) 646, 1484, 1752, 2199, 2515, 2674
BssT1I CCWWGG 3 cut(s) 1484, 1752, 2199
Bst2UI CCWGG 2 cut(s) 1447, 2676
Bst6I CTCTTC 9 cut(s) 64, 210, 646, 2415, 2646, 2970, 3165, 3551, 3975
BstAFI CTTAAG 2 cut(s) 1115, 1265
BstAUI TGTACA 2 cut(s) 1245, 1327
BstBAI YACGTR 3 cut(s) 2984, 3288, 4299
BstC8I GCNNGC 6 cut(s) 3064, 3534, 4148, 4225, 4229, 4233
BstEII GGTNACC 1 cut(s) 2763
BstF5I GGATG 9 cut(s) 202, 346, 475, 712, 1688, 2209, 3458, 4073, 4216
BstFNI CGCG 1 cut(s) 3775
BstHHI GCGC 1 cut(s) 3698
BstMAI GTCTC 7 cut(s) 269, 283, 1047, 1914, 2276, 2972, 4015
BstMWI GCNNNNNNNGC 8 cut(s) 846, 1035, 1117, 1238, 2170, 3063, 3095, 4033
BstNI CCWGG 2 cut(s) 1447, 2676
BstNSI RCATGY 2 cut(s) 1308, 3650
BstPAI GACNNNNGTC 1 cut(s) 2984
BstPI GGTNACC 1 cut(s) 2763
BstSCI CCNGG 6 cut(s) 484, 646, 1445, 2674, 3268, 3856
BstSLI GKGCMC 2 cut(s) 3371, 3520
BstUI CGCG 1 cut(s) 3775
BstV1I GCAGC 6 cut(s) 1123, 1241, 3124, 3986, 4222, 4225
BstV2I GAAGAC 5 cut(s) 695, 1463, 1701, 1881, 4206
BstX2I RGATCY 4 cut(s) 444, 901, 1440, 2183
BstXI CCANNNNNNTGG 2 cut(s) 170, 541
BstYI RGATCY 4 cut(s) 444, 901, 1440, 2183
BsuRI GGCC 9 cut(s) 204, 849, 1408, 3098, 3292, 3369, 3428, 3738, 4265
BtrI CACGTC 1 cut(s) 1369
BtsCI GGATG 9 cut(s) 202, 346, 475, 712, 1688, 2209, 3458, 4073, 4216
BtsIMutI CAGTG 6 cut(s) 388, 3017, 3622, 3891, 4210, 4284
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 6 cut(s) 3064, 3534, 4148, 4225, 4229, 4233
CciI TCATGA 1 cut(s) 126
CfoI GCGC 1 cut(s) 3698
Cfr13I GGNCC 5 cut(s) 1449, 3367, 3368, 3737, 4264
CseI GACGC 4 cut(s) 251, 3764, 3781, 4296
CspCI CAANNNNNGTGG 6 cut(s) 309, 344, 2007, 2042, 3210, 3245
DraI TTTAAA 3 cut(s) 1210, 1426, 3681
EaeI YGGCCR 4 cut(s) 1406, 3096, 3290, 3426
Eam1104I CTCTTC 9 cut(s) 64, 210, 646, 2415, 2646, 2970, 3165, 3551, 3975
EarI CTCTTC 9 cut(s) 64, 210, 646, 2415, 2646, 2970, 3165, 3551, 3975
EciI GGCGGA 1 cut(s) 2865
Ecl136II GAGCTC 2 cut(s) 2134, 2537
Eco130I CCWWGG 3 cut(s) 1484, 1752, 2199
Eco24I GRGCYC 4 cut(s) 2136, 2539, 2675, 3371
Eco32I GATATC 1 cut(s) 2051
Eco47I GGWCC 1 cut(s) 1449
Eco53kI GAGCTC 2 cut(s) 2134, 2537
Eco57I CTGAAG 8 cut(s) 278, 438, 1497, 1979, 2208, 3466, 3536, 3621
Eco72I CACGTG 2 cut(s) 2984, 3288
Eco88I CYCGRG 4 cut(s) 740, 1075, 1704, 2129
Eco91I GGTNACC 1 cut(s) 2763
EcoICRI GAGCTC 2 cut(s) 2134, 2537
EcoO65I GGTNACC 1 cut(s) 2763
EcoRI GAATTC 3 cut(s) 143, 3041, 3120
EcoRII CCWGG 2 cut(s) 1445, 2674
EcoRV GATATC 1 cut(s) 2051
EcoT14I CCWWGG 3 cut(s) 1484, 1752, 2199
EcoT22I ATGCAT 2 cut(s) 1243, 1320
EcoT38I GRGCYC 4 cut(s) 2136, 2539, 2675, 3371
ErhI CCWWGG 3 cut(s) 1484, 1752, 2199
Esp3I CGTCTC 2 cut(s) 269, 2276
FalI AAGNNNNNCTT 4 cut(s) 2694, 2726, 3368, 3400
FaqI GGGAC 1 cut(s) 468
FauI CCCGC 1 cut(s) 913
FauNDI CATATG 1 cut(s) 665
FbaI TGATCA 4 cut(s) 1390, 2332, 2806, 3007
Fnu4HI GCNGC 6 cut(s) 1112, 1230, 3113, 3975, 4236, 4239
FokI GGATG 9 cut(s) 209, 353, 482, 719, 1695, 2216, 3445, 4060, 4223
FriOI GRGCYC 4 cut(s) 2136, 2539, 2675, 3371
Fsp4HI GCNGC 6 cut(s) 1112, 1230, 3113, 3975, 4236, 4239
FspI TGCGCA 1 cut(s) 3697
GlaI GCGC 1 cut(s) 3697
GluI GCNGC 6 cut(s) 1112, 1230, 3113, 3975, 4236, 4239
GsaI CCCAGC 3 cut(s) 2145, 3089, 3532
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 9 cut(s) 204, 849, 1408, 3098, 3292, 3369, 3428, 3738, 4265
HapII CCGG 9 cut(s) 486, 648, 1345, 2768, 3269, 3726, 3823, 3857, 4050
HgaI GACGC 4 cut(s) 251, 3764, 3781, 4296
HhaI GCGC 1 cut(s) 3698
Hin6I GCGC 1 cut(s) 3696
HinP1I GCGC 1 cut(s) 3696
HincII GTYRAC 5 cut(s) 318, 801, 2839, 2989, 3433
HindII GTYRAC 5 cut(s) 318, 801, 2839, 2989, 3433
HindIII AAGCTT 3 cut(s) 1826, 2480, 3895
HpaI GTTAAC 1 cut(s) 801
HpaII CCGG 9 cut(s) 486, 648, 1345, 2768, 3269, 3726, 3823, 3857, 4050
HphI GGTGA 6 cut(s) 86, 899, 1833, 3176, 3781, 3977
Hpy166II GTNNAC 6 cut(s) 318, 801, 1248, 2839, 2989, 3433
Hpy8I GTNNAC 6 cut(s) 318, 801, 1248, 2839, 2989, 3433
HpyF10VI GCNNNNNNNGC 8 cut(s) 846, 1035, 1117, 1238, 2170, 3063, 3095, 4033
HspAI GCGC 1 cut(s) 3696
Kpn2I TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
Ksp22I TGATCA 4 cut(s) 1390, 2332, 2806, 3007
KspAI GTTAAC 1 cut(s) 801
LguI GCTCTTC 2 cut(s) 210, 646
LmnI GCTCC 4 cut(s) 1954, 2534, 3598, 4052
Lsp1109I GCAGC 6 cut(s) 1123, 1241, 3124, 3986, 4222, 4225
LweI GCATC 9 cut(s) 577, 1006, 1016, 1361, 1569, 1673, 3715, 3961, 4327
MflI RGATCY 4 cut(s) 444, 901, 1440, 2183
MhlI GDGCHC 5 cut(s) 2136, 2539, 2675, 3371, 3520
MlsI TGGCCA 3 cut(s) 1408, 3098, 3292
MluI ACGCGT 1 cut(s) 3773
MluNI TGGCCA 3 cut(s) 1408, 3098, 3292
MmeI TCCRAC 9 cut(s) 1578, 1671, 1690, 1785, 1794, 2299, 2547, 2938, 3114
Mox20I TGGCCA 3 cut(s) 1408, 3098, 3292
Mph1103I ATGCAT 2 cut(s) 1243, 1320
MroI TCCGGA 4 cut(s) 1344, 3725, 3822, 4049
MroXI GAANNNNTTC 5 cut(s) 549, 1509, 2505, 2597, 4118
MscI TGGCCA 3 cut(s) 1408, 3098, 3292
MslI CAYNNNNRTG 5 cut(s) 90, 503, 539, 1524, 2691
Msp20I TGGCCA 3 cut(s) 1408, 3098, 3292
MspA1I CMGCKG 1 cut(s) 1396
MspCI CTTAAG 2 cut(s) 1115, 1265
MspI CCGG 9 cut(s) 486, 648, 1345, 2768, 3269, 3726, 3823, 3857, 4050
MspR9I CCNGG 6 cut(s) 486, 648, 1447, 2676, 3270, 3858
Mva1269I GAATGC 5 cut(s) 1320, 1945, 2319, 2597, 2905
MvaI CCWGG 2 cut(s) 1447, 2676
MvnI CGCG 1 cut(s) 3775
MwoI GCNNNNNNNGC 8 cut(s) 846, 1035, 1117, 1238, 2170, 3063, 3095, 4033
NciI CCSGG 4 cut(s) 486, 648, 3270, 3858
NdeI CATATG 1 cut(s) 665
NlaIV GGNNCC 2 cut(s) 490, 3369
NmuCI GTSAC 5 cut(s) 1623, 2606, 3540, 3769, 3952
NsbI TGCGCA 1 cut(s) 3697
NsiI ATGCAT 2 cut(s) 1243, 1320
NspI RCATGY 2 cut(s) 1308, 3650
OliI CACNNNNGTG 1 cut(s) 539
PaeR7I CTCGAG 2 cut(s) 1704, 2129
PagI TCATGA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 875
PciI ACATGT 1 cut(s) 1304
PciSI GCTCTTC 2 cut(s) 210, 646
PctI GAATGC 5 cut(s) 1320, 1945, 2319, 2597, 2905
PdmI GAANNNNTTC 5 cut(s) 549, 1509, 2505, 2597, 4118
PfeI GAWTC 9 cut(s) 437, 1418, 1555, 2343, 2523, 3401, 3476, 3803, 4066
PfoI TCCNGGA 1 cut(s) 3268
PkrI GCNGC 6 cut(s) 1113, 1231, 3114, 3976, 4237, 4240
PmaCI CACGTG 2 cut(s) 2984, 3288
PmlI CACGTG 2 cut(s) 2984, 3288
Ppu21I YACGTR 3 cut(s) 2984, 3288, 4299
PscI ACATGT 1 cut(s) 1304
PshAI GACNNNNGTC 1 cut(s) 2984
PshBI ATTAAT 2 cut(s) 2967, 3324
Psp124BI GAGCTC 2 cut(s) 2136, 2539
Psp6I CCWGG 2 cut(s) 1445, 2674
PspCI CACGTG 2 cut(s) 2984, 3288
PspEI GGTNACC 1 cut(s) 2763
PspFI CCCAGC 3 cut(s) 2141, 3085, 3528
PspGI CCWGG 2 cut(s) 1445, 2674
PspN4I GGNNCC 2 cut(s) 490, 3369
PspOMI GGGCCC 1 cut(s) 3367
PspPI GGNCC 5 cut(s) 1449, 3367, 3368, 3737, 4264
PspXI VCTCGAGB 2 cut(s) 1704, 2129
PsuI RGATCY 4 cut(s) 444, 901, 1440, 2183
PvuII CAGCTG 1 cut(s) 1396
RseI CAYNNNNRTG 5 cut(s) 90, 503, 539, 1524, 2691
SacI GAGCTC 2 cut(s) 2136, 2539
SapI GCTCTTC 2 cut(s) 210, 646
SatI GCNGC 6 cut(s) 1112, 1230, 3113, 3975, 4236, 4239
Sau96I GGNCC 5 cut(s) 1449, 3367, 3368, 3737, 4264
ScrFI CCNGG 6 cut(s) 486, 648, 1447, 2676, 3270, 3858
SduI GDGCHC 5 cut(s) 2136, 2539, 2675, 3371, 3520
SfaNI GCATC 9 cut(s) 577, 1006, 1016, 1361, 1569, 1673, 3715, 3961, 4327
Sfr274I CTCGAG 2 cut(s) 1704, 2129
SinI GGWCC 1 cut(s) 1449
SlaI CTCGAG 2 cut(s) 1704, 2129
SmiMI CAYNNNNRTG 5 cut(s) 90, 503, 539, 1524, 2691
SpeI ACTAGT 1 cut(s) 538
SsiI CCGC 4 cut(s) 906, 1798, 2876, 4102
SspI AATATT 2 cut(s) 3568, 3609
SstI GAGCTC 2 cut(s) 2136, 2539
StyD4I CCNGG 6 cut(s) 484, 646, 1445, 2674, 3268, 3856
StyI CCWWGG 3 cut(s) 1484, 1752, 2199
TaqI TCGA 9 cut(s) 108, 790, 1099, 1234, 1355, 1705, 1872, 1972, 2130
TatI WGTACW 5 cut(s) 1245, 1327, 2627, 3024, 4255
TfiI GAWTC 9 cut(s) 437, 1418, 1555, 2343, 2523, 3401, 3476, 3803, 4066
TscAI CASTG 6 cut(s) 388, 3017, 3622, 3891, 4210, 4284
TseFI GTSAC 5 cut(s) 1623, 2606, 3540, 3769, 3952
TseI GCWGC 6 cut(s) 1111, 1229, 3112, 3974, 4235, 4238
Tsp45I GTSAC 5 cut(s) 1623, 2606, 3540, 3769, 3952
TspGWI ACGGA 4 cut(s) 152, 1305, 2541, 4175
TspRI CASTG 6 cut(s) 388, 3017, 3622, 3891, 4210, 4284
Vha464I CTTAAG 2 cut(s) 1115, 1265
VpaK11BI GGWCC 1 cut(s) 1449
VspI ATTAAT 2 cut(s) 2967, 3324
XbaI TCTAGA 2 cut(s) 782, 3763
XceI RCATGY 2 cut(s) 1308, 3650
XhoI CTCGAG 2 cut(s) 1704, 2129
XmnI GAANNNNTTC 5 cut(s) 549, 1509, 2505, 2597, 4118
Zsp2I ATGCAT 2 cut(s) 1243, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.