FvH4_3g05070

disease resistance

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
2933763 .. 2941010
7248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05070.t1

Sequence Viewer

Length: 4920 bp
ATGGTATTTCTTATTGATATTGGTACTACAATTGTTGCGAAGCTAGCTGAGTACACGATTGAGCCAGTTATACGCCAAGTGGGTTATGTAATCTGCTACAACAAGAACTTCAAAAAACTACAAACTCGAGTTGGTGACTTGGGTGGTGCCAGAGACAGCATGGAGAATGATGTTAAAGCAGAGGAAAGAAAAGGTAAAAAGATTGAAAAAGAGGTCCAGGACTGGCTGACTAAAGTGGGTGAGCTGACTAACGAAGCAGCTGCTTTGAATGATAAACACCTTGCACAAACCAAGTGTCTACATGGCTTTTGTCCTAATCTAAAGCTTCGTCATCATCTAAGCAGGAAATCAACAAAACTAGTTCTTGAGGTTGCTGAACTTCATGAGAAAAGGAACAATTTTGCCCATATCGCATATGATGCTTCTACTGAAATGGTGTGTATCCAAAATTATGAGGCCTTGGATTCAAGGACTTCGACCGCAATGGCTGTAATCAACGAACTAAGAAATTCTAATACCTACATGATTGGGGTGTACGGTATTGGGGGTGTCGGAAAGACAACACTTGTCAAAGAGGTTAATAACCAATTAGCTACAAGTGGTGAGAAGCTGTTTGATGAGGTTGTCATGATACGCGATCTGAAACATGATCCCAGCATCGAGCGAATTCAAAAAGAAATGGCTGAGAAGTTAGGCCTCGAGCTTCCTGAAAATGGGACCCCAGCTGGAAGAGCACATCTAATAAGCAACAGAATCAAAGATAAGAAGACTCTTGTGATTCTGGATGATGTTTGGGAGAGCATTGATTTGGAGGCTGTTGGTCTTCCTCGCATGGCAACTATCAAAATCTTGTTGACTTCACGAAGTAAGCTAGTATTAGCTCAAGACATGGGTACACAAAAAGATTTTCCTCTCGAAGTATTGAACGAAGAAGAAAGTTGGAGATTATTTCAGAAAATGGCGGGTGATATTTTTGAAAATCCCGATATAAAAACAATAGCAACCCAAGTCGCTGAGAGATGTGGAGGTTTGCCGCTTTTGATAGTCACTGTTGCAAGATCTTTGAAAGACAGTCCATTATATGATTGGAAAGATACTTTCAGACGACTGAAAAACTTTGATGGAAAAGGACTGGAAGATAAAACATATGCTGCTATTGAGTGGAGTTACGATAAATTGAATAGTGAGGAGCTTAAGTCAGTATTCTTGCTCTGTGAAAGTGAGAGTGGGAGTGCCAATGAAGTTTACATCCTTGACTTGTTGAAATACAGTATGGGGCTGGGTTTCATAAAGAATGTAGATACAATGGAAGAAGCACGGGATGCATTGAATTCACTGCTTAAAAAGCTTCAGCATTCTTGCCTGTTGCTAGATACAGGTAATAATGGATGGGTCAGAATCCATGATCTTGTAAAACATGTTGCGAAACATATTGCTGCTAGAGATCATCATGTGTTATCTGTATCTTATGGAAGCGAGTTGAAAGAATGGCCAGATATGGAATTCTGTGAAAAGTGCACTACGATCTCTCTTATGTACTGCCAAACTCCCGAGCTTCCTCAAGTTCTGCAATGCCCAGAACTAACAATGTTTCATTTAAGCAGTGTTGATGTTGACTCCCGTGAAATCCCAAGCAAACTTTTTAAAGAGATGAAGAAACTCAAAGTTTTAGATTTAACTAAACGGAGTATTGCATCACTACCTCCGTCTCTTAAATTCCTCAAAGATCTTCAGACATTGTGCTTGGATCAATGCATGTTGGAAGACATTGCTCTAGTTGGTGAGTTGAAAAACTTGAAAATCTTGAGCTTTTTACAATCCAAGTTTAAGGAATTACCCGAAGAGATAGGGCAATTAACTCGTCTACAATTATTGGATTTAACTGACTGCTCTCAACTCGAAGTGGTTTCACCTGATGTTATATCCAAGTTGAAACGACTCGAAGAGTTGAGAATGGGAAAGAACAGCTTTAACAAATGGGAAGCTGGAAGAGTCGGCGAGACTAAAAGAAGTAATGCAAGCCTTGAAGAGTTAACGTATTTGCCTCGGCTAACCGCATTACATATACATATCCCAGATGCCACCATACTTCCAGCAAATTTGTTCACCACTAGTAAGTTGGAGAGGTTCCAAATTTGTATCGGTTCTGTGTGGAAATGGGATGATGTGGATGAAGCTCTCAATGCACTAAAGCTGAAGCTCACTAGCTACAATGAATTGGACCAAGGTCTAAAAATGTTGCTAAAAAATACTCAAGACTTGTACGTGGAGGGGATGGAGGATGTTAATGACAAGTTTTTCCGTGAACTAGCCACAGGAGGTTATCAGCAATTGAAACATCTACATGTCCAAAACAATGCTAAATTTGCGTACACGATAAATGAGAAGGTTGGTTTTCCTAACTTAACATGGTTGGCGGTGAGTGAGCTCAAAAGTTTAAGGTTCTTGTTATCATCTTCAATGGCTAGAAGTTTATCCCAAGTCAAACGTCTTCAGATATCCGGATGTCAATTTATGGAAGTGGTAATTTCGATAGAAGAATCTAATAAAGAACTTGCAGAGAACTTTTTTCCCCAACTACAAGATTTGGAGCTAAATGGCCTTCCAAACCTCACTAAATTCTGCTCAACATGTGAGAGATTAGAGGACTGTACTGAAAGTGCTGGAATCTGTGAAGAAGTTGGAGAGATTGACTCAAAAGGAAACCTTGATTTTGTGATACAACACTTTCTTTTTGAAAATAAGGGTGAGTTTCCAAACATGAAGAAGTTATCCTTAAATGGCTTAGCAAAGTTGACGACAATATGGAATAATAAAGTTTCTCTAGGGAGTTCAAAAAACCTAGAGACAATAGAGATTGTTTCGTGTGGCAGTTTGAAGAGTGTTTTTCCAGCTTCCGTGGCCAAAAGTCTTCAACAGTTGAGTCGTCTAAAAGTGCAAAATTGTGGGGTGGAGGAAATCATCTCGAAAGAGGATGATGTACAAACAACACCTATGTTTGTTTTTTCAAAACTAACATATGTGAGATTTGAAAATTTGCCCCAACTTAAGAGTTTTTATCCAGGATTGCATTATTCTGAGTGCCCGTCACTCTTAACTTTGCTGGTGTATGGTTGTACTAAGGTGCAGATATTTGCAAAGGGAATACCTGAGTTGAAGAATCCCTGCACTCCAAATGAACAATTTTTGTTTTTACTTGAGAAGGATTCATTGCCCAACTTGGAAACTTTAGGCTTCGGCATAATGGAGAACTGGGATAGTCCGCCACTCCACTTGTTGAGGAACCTCAAGTATCTTTATAGTTATGCACACACCAACGACTCATCTTTGATTTCCCTTGAGCAATTACTTGGTCTTGAAAAAGTCAATGGAGAAATACATGCAGCTGGGGATGCGACCTTCCCGTTTTTAAGAGAGTGGCACCTTCACGGGATGCGGAAGCTGATGAATCTTGGGGATGATAGCTTCGGATCAGCAGGCCTATATTTTCCAAAAGTGGAAATTCTGGAGCTAGAGGACTGTGACAGCTTACAGAATTTAAGATCGTCCACAATATCCTTCAACAATCTAACAACTCTGCAAGTAAGTCATTGTAAGGGATTGAAATACTTGATATCTATCTCCATGGCTAAAAGTTTGATGCAACTCACAAAACTAGAAGTTCGTGATTGTGAGGAAATGATAGAAATAGTTGCCAGCAGTGGAAATGACGTTGCAAGAAATGAGATTGAATTCAAGATGTTGAAACATTTGGAACTGTCTGCTCTACCAAGTCTGAGAGGCTTCTGCTCCGGAACTCACACTGTCAAATTCCCGTCCTTGGAAAATTTATGTATGACTGGTTGCACTCAACTGGAGGGATTCATCCTTGACGTTACTACGGATAAAAACAGACTTGCCAATGAGATCAAAGACATCGAGAGTGCTAGACTAATGCAGCGATTCCTTTTCGACAACAAGGTTGAATTGCCGAAGTTGACGAGTTTGTCTCTCGAGGGTCTAACCAAGTTGACCACAATATGGAATAAACAAATACAGAACACATCAGCAGCACCATTCGATTGTGAAAATCTGAAGTATGTGGAGATTTACTCATGCGAGAATTTGGAAAATATTTTTCCATTGTGGGTGGCTAGAAATCTCCAGCAGTTACAGACTCTCATAGTGAAGAATTGCGGAGTGAAGGAAATCGTTGCAAGAGAGGAGAGATTACAAACAGTATTTAAGTTTGTGTTTCCAAAAGTAACACTCGTGCTCTTTTGGAACTTGTCCGAGCTCATAAACTTCTACCCAGGGATGCACGTGTGTAGCTGGCCATTGCTTAATGACTTGGGAGTGTTTAATTGCAACAAAGTGGACATATTTGCTGAAGAGTTTTCAAGTTTCCAAGAAAAGCTTGACGGGAACAGTTCCAGTACTCTTACTAATCGGCAATTTCTCTTTTCAATTGAGAAGGATTCATTTCCCAACTTGGAGCGGTTGGGCTTGAATGCAATGGAGTTCTCCAATGGTCCACTCCCAGCAGCAGCGCAGTTTTTTGGTAAACTAAAGAAACTTGAGGTTTGTTGTCCAGAGTCCAAGTCACTTGTTTTCCTGGACAAATTACTACTCGACCCTGAAGGAAGCAGCACTGCTAGTGCTGTTGGGATAACGACCCAGCAGTTCCCTCATTTAAAAGAGTTGAGCCTTGTTCGAATGAAGAAGCTGATGCATCTAGGCCAGGATGATGAGGAGGATAACTCACAATCAGCCACTCGCATCCCAAATATTCCAAACCTTCAAACTCTGTTCGCAAATGCTTGTGACAGCTTAAGGAATCTGAGATCATCTGCAATATCCTTCGACAATCTAACAACTTTGCAAGCAAGTGTTTGCAACAGGTTGGAGTACTTGATAAGTGCAAATAGTGGGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1640

Amino Acids

185.2

Weight (kDa)

5.7

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 322 6.9e-30 NB-ARC domain
LRR_14 PF23598 510 - 713 1.5e-13 Leucine-rich repeat region
LRR_RPS2 PF23247 797 - 875 3.2e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 915 - 983 1.5e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1179 - 1286 3.6e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1310 - 1393 1.1e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1481 - 1625 7e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3985
AccB1I GGYRCC 2 cut(s) 146, 3420
AccB7I CCANNNNNTGG 1 cut(s) 4020
AccBSI CCGCTC 1 cut(s) 4477
AccI GTMKAC 2 cut(s) 298, 1864
AccII CGCG 1 cut(s) 636
AccIII TCCGGA 2 cut(s) 2501, 3791
AciI CCGC 9 cut(s) 480, 962, 1034, 2055, 2417, 3263, 3436, 4176, 4477
AclWI GGATC 3 cut(s) 644, 1755, 3478
AcoI YGGCCR 3 cut(s) 1490, 2901, 4313
AcuI CTGAAG 7 cut(s) 1334, 1715, 2216, 2477, 4094, 4389, 4638
AcvI CACGTG 1 cut(s) 4303
AfiI CCNNNNNNNGG 3 cut(s) 713, 3820, 4020
AflII CTTAAG 3 cut(s) 1193, 3047, 4810
AflIII ACRYGT 4 cut(s) 1417, 2344, 2630, 4302
AhlI ACTAGT 2 cut(s) 358, 2111
AjnI CCWGG 5 cut(s) 216, 3061, 4291, 4593, 4719
Alw21I GWGCWC 5 cut(s) 736, 1520, 2430, 4257, 4278
Alw26I GTCTC 5 cut(s) 147, 1713, 1994, 2840, 3993
Alw44I GTGCAC 1 cut(s) 1516
AlwI GGATC 3 cut(s) 644, 1755, 3478
Ama87I CYCGRG 4 cut(s) 126, 698, 1550, 3992
Aor13HI TCCGGA 2 cut(s) 2501, 3791
AoxI GGCC 8 cut(s) 456, 694, 1490, 2599, 2901, 3478, 4313, 4717
ApaLI GTGCAC 1 cut(s) 1516
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AspLEI GCGC 1 cut(s) 4531
AspS9I GGNCC 4 cut(s) 214, 717, 2221, 4511
AsuHPI GGTGA 9 cut(s) 146, 251, 614, 977, 1793, 1902, 2098, 2431, 2759
AsuII TTCGAA 1 cut(s) 4693
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 4 cut(s) 126, 698, 1550, 3992
AvaII GGWCC 4 cut(s) 214, 717, 2221, 4511
BaeGI GKGCMC 2 cut(s) 1520, 3086
BalI TGGCCA 3 cut(s) 1492, 2903, 4315
BanI GGYRCC 2 cut(s) 146, 3420
BanII GRGCYC 2 cut(s) 2430, 4278
BauI CACGAG 1 cut(s) 4250
BbrPI CACGTG 1 cut(s) 4303
BbsI GAAGAC 5 cut(s) 773, 815, 1770, 2483, 2903
Bbv12I GWGCWC 5 cut(s) 736, 1520, 2430, 4257, 4278
BccI CCATC 3 cut(s) 1115, 1383, 2269
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 1841, 1875
BciT130I CCWGG 5 cut(s) 218, 3063, 4293, 4595, 4721
BciVI GTATCC 1 cut(s) 452
BcoDI GTCTC 5 cut(s) 147, 1713, 1994, 2840, 3993
BcuI ACTAGT 2 cut(s) 358, 2111
BfrI CTTAAG 3 cut(s) 1193, 3047, 4810
BfuI GTATCC 1 cut(s) 452
BglII AGATCT 2 cut(s) 1058, 1726
BlpI GCTNAGC 1 cut(s) 2785
BmcAI AGTACT 2 cut(s) 4417, 4889
Bme1390I CCNGG 5 cut(s) 218, 3063, 4293, 4595, 4721
Bme18I GGWCC 4 cut(s) 214, 717, 2221, 4511
BmeT110I CYCGRG 4 cut(s) 126, 698, 1550, 3992
BmgT120I GGNCC 4 cut(s) 214, 717, 2221, 4511
BmiI GGNNCC 6 cut(s) 148, 718, 719, 2129, 3284, 3422
BmrFI CCNGG 5 cut(s) 218, 3063, 4293, 4595, 4721
BmrI ACTGGG 1 cut(s) 3262
BmtI GCTAGC 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 3262
BoxI GACNNNNGTC 1 cut(s) 2226
BpiI GAAGAC 5 cut(s) 773, 815, 1770, 2483, 2903
BplI GAGNNNNNCTC 8 cut(s) 2678, 2710, 3973, 4005, 4076, 4108, 4724, 4756
BpmI CTGGAG 3 cut(s) 3527, 3875, 4127
Bpu1102I GCTNAGC 1 cut(s) 2785
Bpu14I TTCGAA 1 cut(s) 4693
BpuEI CTTGAG 9 cut(s) 386, 867, 1545, 1825, 2238, 3218, 3272, 3359, 4577
BsaAI YACGTR 2 cut(s) 2266, 4303
BsaBI GATNNNNATC 1 cut(s) 3617
BsaJI CCNNGG 8 cut(s) 459, 2045, 2224, 2898, 3624, 3819, 4291, 4292
BsaWI WCCGGW 2 cut(s) 2501, 3791
BsaXI ACNNNNNCTCC 2 cut(s) 1181, 1211
Bsc4I CCNNNNNNNGG 3 cut(s) 713, 3820, 4020
Bse1I ACTGG 7 cut(s) 65, 227, 1137, 3257, 3844, 3858, 4413
Bse3DI GCAATG 6 cut(s) 489, 1577, 1767, 3209, 4316, 4500
Bse8I GATNNNNATC 1 cut(s) 3617
BseAI TCCGGA 2 cut(s) 2501, 3791
BseBI CCWGG 5 cut(s) 218, 3063, 4293, 4595, 4721
BseDI CCNNGG 8 cut(s) 459, 2045, 2224, 2898, 3624, 3819, 4291, 4292
BseJI GATNNNNATC 1 cut(s) 3617
BseLI CCNNNNNNNGG 3 cut(s) 713, 3820, 4020
BseMI GCAATG 6 cut(s) 489, 1577, 1767, 3209, 4316, 4500
BseMII CTCAG 7 cut(s) 39, 675, 1005, 3069, 3141, 3767, 4811
BseNI ACTGG 7 cut(s) 65, 227, 1137, 3257, 3844, 3858, 4413
BseRI GAGGAG 3 cut(s) 1202, 4217, 4745
BseSI GKGCMC 2 cut(s) 1520, 3086
BseYI CCCAGC 6 cut(s) 653, 721, 1279, 3386, 4519, 4656
BsgI GTGCAG 2 cut(s) 3146, 3151
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 480
BshFI GGCC 8 cut(s) 458, 696, 1492, 2601, 2903, 3480, 4315, 4719
BshNI GGYRCC 2 cut(s) 146, 3420
BsiEI CGRYCG 1 cut(s) 480
BsiHKAI GWGCWC 5 cut(s) 736, 1520, 2430, 4257, 4278
BsiHKCI CYCGRG 4 cut(s) 126, 698, 1550, 3992
BsiSI CCGG 2 cut(s) 2502, 3792
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 3 cut(s) 713, 3820, 4020
BsmAI GTCTC 5 cut(s) 147, 1713, 1994, 2840, 3993
BsmBI CGTCTC 1 cut(s) 1713
BsmFI GGGAC 1 cut(s) 730
BsmI GAATGC 2 cut(s) 1354, 4495
BsnI GGCC 8 cut(s) 458, 696, 1492, 2601, 2903, 3480, 4315, 4719
BsoBI CYCGRG 4 cut(s) 126, 698, 1550, 3992
Bsp119I TTCGAA 1 cut(s) 4693
Bsp1286I GDGCHC 6 cut(s) 736, 1520, 2430, 3086, 4257, 4278
Bsp13I TCCGGA 2 cut(s) 2501, 3791
Bsp1407I TGTACA 1 cut(s) 2980
Bsp1720I GCTNAGC 1 cut(s) 2785
Bsp19I CCATGG 1 cut(s) 3624
BspACI CCGC 9 cut(s) 480, 962, 1034, 2055, 2417, 3263, 3436, 4176, 4477
BspANI GGCC 8 cut(s) 458, 696, 1492, 2601, 2903, 3480, 4315, 4719
BspCNI CTCAG 7 cut(s) 40, 676, 1006, 3070, 3142, 3768, 4812
BspEI TCCGGA 2 cut(s) 2501, 3791
BspFNI CGCG 1 cut(s) 636
BspHI TCATGA 2 cut(s) 382, 627
BspLI GGNNCC 6 cut(s) 148, 718, 719, 2129, 3284, 3422
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 3 cut(s) 644, 1755, 3478
BspQI GCTCTTC 1 cut(s) 724
BspT104I TTCGAA 1 cut(s) 4693
BspT107I GGYRCC 2 cut(s) 146, 3420
BspTI CTTAAG 3 cut(s) 1193, 3047, 4810
BsrBI CCGCTC 1 cut(s) 4477
BsrDI GCAATG 6 cut(s) 489, 1577, 1767, 3209, 4316, 4500
BsrGI TGTACA 1 cut(s) 2980
BsrI ACTGG 7 cut(s) 65, 227, 1137, 3257, 3844, 3858, 4413
BssECI CCNNGG 8 cut(s) 459, 2045, 2224, 2898, 3624, 3819, 4291, 4292
BssSI CACGAG 1 cut(s) 4250
BssT1I CCWWGG 4 cut(s) 459, 2224, 3624, 3819
Bst2BI CACGAG 1 cut(s) 4250
Bst2UI CCWGG 5 cut(s) 218, 3063, 4293, 4595, 4721
Bst6I CTCTTC 7 cut(s) 724, 1836, 1938, 1984, 2022, 2873, 4365
BstAFI CTTAAG 3 cut(s) 1193, 3047, 4810
BstAPI GCANNNNNTGC 2 cut(s) 419, 1322
BstAUI TGTACA 1 cut(s) 2980
BstBAI YACGTR 2 cut(s) 2266, 4303
BstBI TTCGAA 1 cut(s) 4693
BstC8I GCNNGC 6 cut(s) 45, 2020, 3478, 3697, 4313, 4863
BstDSI CCRYGG 2 cut(s) 2898, 3624
BstFNI CGCG 1 cut(s) 636
BstHHI GCGC 1 cut(s) 4531
BstMAI GTCTC 5 cut(s) 147, 1713, 1994, 2840, 3993
BstMCI CGRYCG 1 cut(s) 480
BstNI CCWGG 5 cut(s) 218, 3063, 4293, 4595, 4721
BstNSI RCATGY 5 cut(s) 1421, 1759, 2348, 2634, 3383
BstPAI GACNNNNGTC 1 cut(s) 2226
BstSCI CCNGG 5 cut(s) 216, 3061, 4291, 4593, 4719
BstSLI GKGCMC 2 cut(s) 1520, 3086
BstUI CGCG 1 cut(s) 636
BstV2I GAAGAC 5 cut(s) 773, 815, 1770, 2483, 2903
BstX2I RGATCY 2 cut(s) 1058, 1726
BstYI RGATCY 2 cut(s) 1058, 1726
BsuI GTATCC 1 cut(s) 452
BsuRI GGCC 8 cut(s) 458, 696, 1492, 2601, 2903, 3480, 4315, 4719
BtgI CCRYGG 2 cut(s) 2898, 3624
BtsI GCAGTG 4 cut(s) 1334, 1609, 3706, 4629
BtsIMutI CAGTG 6 cut(s) 1047, 1334, 1609, 3706, 3801, 4629
Cac8I GCNNGC 6 cut(s) 45, 2020, 3478, 3697, 4313, 4863
CciI TCATGA 2 cut(s) 382, 627
CfoI GCGC 1 cut(s) 4531
Cfr13I GGNCC 4 cut(s) 214, 717, 2221, 4511
CspCI CAANNNNNGTGG 2 cut(s) 3255, 3290
DraI TTTAAA 2 cut(s) 1645, 4674
DrdI GACNNNNNNGTC 1 cut(s) 3985
DseDI GACNNNNNNGTC 1 cut(s) 3985
EaeI YGGCCR 3 cut(s) 1490, 2901, 4313
Eam1104I CTCTTC 7 cut(s) 724, 1836, 1938, 1984, 2022, 2873, 4365
EarI CTCTTC 7 cut(s) 724, 1836, 1938, 1984, 2022, 2873, 4365
EciI GGCGGA 1 cut(s) 3252
Ecl136II GAGCTC 2 cut(s) 2428, 4276
Eco130I CCWWGG 4 cut(s) 459, 2224, 3624, 3819
Eco147I AGGCCT 3 cut(s) 458, 696, 3480
Eco24I GRGCYC 2 cut(s) 2430, 4278
Eco32I GATATC 2 cut(s) 2499, 3615
Eco47I GGWCC 4 cut(s) 214, 717, 2221, 4511
Eco53kI GAGCTC 2 cut(s) 2428, 4276
Eco57I CTGAAG 7 cut(s) 1334, 1715, 2216, 2477, 4094, 4389, 4638
Eco72I CACGTG 1 cut(s) 4303
Eco88I CYCGRG 4 cut(s) 126, 698, 1550, 3992
EcoICRI GAGCTC 2 cut(s) 2428, 4276
EcoO109I RGGNCCY 1 cut(s) 717
EcoRI GAATTC 4 cut(s) 666, 1330, 1502, 3731
EcoRII CCWGG 5 cut(s) 216, 3061, 4291, 4593, 4719
EcoRV GATATC 2 cut(s) 2499, 3615
EcoT14I CCWWGG 4 cut(s) 459, 2224, 3624, 3819
EcoT22I ATGCAT 3 cut(s) 1327, 1757, 4713
EcoT38I GRGCYC 2 cut(s) 2430, 4278
ErhI CCWWGG 4 cut(s) 459, 2224, 3624, 3819
Esp3I CGTCTC 1 cut(s) 1713
FalI AAGNNNNNCTT 8 cut(s) 1952, 1984, 2691, 2723, 2759, 2791, 4380, 4412
FaqI GGGAC 1 cut(s) 730
FauI CCCGC 1 cut(s) 955
FauNDI CATATG 3 cut(s) 415, 1147, 3019
FblI GTMKAC 2 cut(s) 298, 1864
FriOI GRGCYC 2 cut(s) 2430, 4278
GlaI GCGC 1 cut(s) 4530
GsaI CCCAGC 6 cut(s) 657, 725, 1283, 3390, 4523, 4660
GsuI CTGGAG 3 cut(s) 3527, 3875, 4127
HaeIII GGCC 8 cut(s) 458, 696, 1492, 2601, 2903, 3480, 4315, 4719
HapII CCGG 2 cut(s) 2502, 3792
HhaI GCGC 1 cut(s) 4531
Hin6I GCGC 1 cut(s) 4529
HinP1I GCGC 1 cut(s) 4529
HincII GTYRAC 6 cut(s) 855, 1615, 2034, 2796, 3978, 4011
HindII GTYRAC 6 cut(s) 855, 1615, 2034, 2796, 3978, 4011
HindIII AAGCTT 3 cut(s) 323, 1346, 4394
HpaI GTTAAC 1 cut(s) 2034
HpaII CCGG 2 cut(s) 2502, 3792
HphI GGTGA 9 cut(s) 146, 251, 614, 977, 1793, 1902, 2098, 2431, 2759
HpyCH4IV ACGT 6 cut(s) 2036, 2265, 2488, 3711, 3873, 4302
HpySE526I ACGT 6 cut(s) 2036, 2265, 2488, 3711, 3873, 4302
HspAI GCGC 1 cut(s) 4529
KflI GGGWCCC 1 cut(s) 717
Kpn2I TCCGGA 2 cut(s) 2501, 3791
KspAI GTTAAC 1 cut(s) 2034
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 5 cut(s) 1189, 2590, 3508, 3794, 4474
MaeII ACGT 6 cut(s) 2036, 2265, 2488, 3711, 3873, 4302
MbiI CCGCTC 1 cut(s) 4477
MfeI CAATTG 3 cut(s) 30, 2330, 4446
MflI RGATCY 2 cut(s) 1058, 1726
MhlI GDGCHC 6 cut(s) 736, 1520, 2430, 3086, 4257, 4278
MlsI TGGCCA 3 cut(s) 1492, 2903, 4315
MluNI TGGCCA 3 cut(s) 1492, 2903, 4315
MlyI GAGTC 9 cut(s) 763, 1610, 1932, 2001, 2687, 2932, 3314, 4150, 4583
MmeI TCCRAC 6 cut(s) 532, 920, 1740, 2100, 2662, 4863
Mox20I TGGCCA 3 cut(s) 1492, 2903, 4315
Mph1103I ATGCAT 3 cut(s) 1327, 1757, 4713
MroI TCCGGA 2 cut(s) 2501, 3791
MscI TGGCCA 3 cut(s) 1492, 2903, 4315
MslI CAYNNNNRTG 1 cut(s) 2343
Msp20I TGGCCA 3 cut(s) 1492, 2903, 4315
MspA1I CMGCKG 3 cut(s) 260, 725, 3386
MspCI CTTAAG 3 cut(s) 1193, 3047, 4810
MspI CCGG 2 cut(s) 2502, 3792
MspR9I CCNGG 5 cut(s) 218, 3063, 4293, 4595, 4721
MunI CAATTG 3 cut(s) 30, 2330, 4446
Mva1269I GAATGC 2 cut(s) 1354, 4495
MvaI CCWGG 5 cut(s) 218, 3063, 4293, 4595, 4721
MvnI CGCG 1 cut(s) 636
NcoI CCATGG 1 cut(s) 3624
NdeI CATATG 3 cut(s) 415, 1147, 3019
NheI GCTAGC 1 cut(s) 43
NlaIV GGNNCC 6 cut(s) 148, 718, 719, 2129, 3284, 3422
NmeAIII GCCGAG 1 cut(s) 2026
NmuCI GTSAC 6 cut(s) 134, 1045, 3087, 3521, 4581, 4802
NsiI ATGCAT 3 cut(s) 1327, 1757, 4713
NspI RCATGY 5 cut(s) 1421, 1759, 2348, 2634, 3383
NspV TTCGAA 1 cut(s) 4693
PaeR7I CTCGAG 3 cut(s) 126, 698, 3992
PagI TCATGA 2 cut(s) 382, 627
PasI CCCWGGG 1 cut(s) 4292
PceI AGGCCT 3 cut(s) 458, 696, 3480
PciI ACATGT 3 cut(s) 1417, 2344, 2630
PciSI GCTCTTC 1 cut(s) 724
PctI GAATGC 2 cut(s) 1354, 4495
PflMI CCANNNNNTGG 1 cut(s) 4020
PfoI TCCNGGA 3 cut(s) 216, 3061, 4593
PleI GAGTC 9 cut(s) 763, 1610, 1932, 2000, 2687, 2931, 3314, 4150, 4582
PmaCI CACGTG 1 cut(s) 4303
PmlI CACGTG 1 cut(s) 4303
PpsI GAGTC 9 cut(s) 763, 1610, 1932, 2000, 2687, 2931, 3314, 4150, 4582
Ppu21I YACGTR 2 cut(s) 2266, 4303
PpuMI RGGWCCY 1 cut(s) 717
PscI ACATGT 3 cut(s) 1417, 2344, 2630
PshAI GACNNNNGTC 1 cut(s) 2226
Psp124BI GAGCTC 2 cut(s) 2430, 4278
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 5 cut(s) 216, 3061, 4291, 4593, 4719
PspCI CACGTG 1 cut(s) 4303
PspFI CCCAGC 6 cut(s) 653, 721, 1279, 3386, 4519, 4656
PspGI CCWGG 5 cut(s) 216, 3061, 4291, 4593, 4719
PspN4I GGNNCC 6 cut(s) 148, 718, 719, 2129, 3284, 3422
PspPI GGNCC 4 cut(s) 214, 717, 2221, 4511
PspPPI RGGWCCY 1 cut(s) 717
PspXI VCTCGAGB 2 cut(s) 126, 698
PsuI RGATCY 2 cut(s) 1058, 1726
PvuII CAGCTG 3 cut(s) 260, 725, 3386
RseI CAYNNNNRTG 1 cut(s) 2343
SacI GAGCTC 2 cut(s) 2430, 4278
SapI GCTCTTC 1 cut(s) 724
Sau96I GGNCC 4 cut(s) 214, 717, 2221, 4511
ScaI AGTACT 2 cut(s) 4417, 4889
SchI GAGTC 9 cut(s) 763, 1610, 1932, 2001, 2687, 2932, 3314, 4150, 4583
ScrFI CCNGG 5 cut(s) 218, 3063, 4293, 4595, 4721
SduI GDGCHC 6 cut(s) 736, 1520, 2430, 3086, 4257, 4278
Sfr274I CTCGAG 3 cut(s) 126, 698, 3992
SfuI TTCGAA 1 cut(s) 4693
SinI GGWCC 4 cut(s) 214, 717, 2221, 4511
SlaI CTCGAG 3 cut(s) 126, 698, 3992
SmiMI CAYNNNNRTG 1 cut(s) 2343
SpeI ACTAGT 2 cut(s) 358, 2111
SseBI AGGCCT 3 cut(s) 458, 696, 3480
SsiI CCGC 9 cut(s) 480, 962, 1034, 2055, 2417, 3263, 3436, 4176, 4477
SspI AATATT 2 cut(s) 4114, 4768
SstI GAGCTC 2 cut(s) 2430, 4278
StuI AGGCCT 3 cut(s) 458, 696, 3480
StyD4I CCNGG 5 cut(s) 216, 3061, 4291, 4593, 4719
StyI CCWWGG 4 cut(s) 459, 2224, 3624, 3819
TaiI ACGT 6 cut(s) 2039, 2268, 2491, 3714, 3876, 4305
TatI WGTACW 7 cut(s) 51, 1536, 2651, 2980, 3116, 4415, 4887
TauI GCSGC 1 cut(s) 1036
TscAI CASTG 6 cut(s) 1054, 1341, 1609, 3706, 3808, 4636
TseFI GTSAC 6 cut(s) 134, 1045, 3087, 3521, 4581, 4802
Tsp45I GTSAC 6 cut(s) 134, 1045, 3087, 3521, 4581, 4802
TspGWI ACGGA 5 cut(s) 1695, 1699, 2291, 2887, 3896
TspRI CASTG 6 cut(s) 1054, 1341, 1609, 3706, 3808, 4636
Van91I CCANNNNNTGG 1 cut(s) 4020
Vha464I CTTAAG 3 cut(s) 1193, 3047, 4810
VneI GTGCAC 1 cut(s) 1516
VpaK11BI GGWCC 4 cut(s) 214, 717, 2221, 4511
XceI RCATGY 5 cut(s) 1421, 1759, 2348, 2634, 3383
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 1083, 2116
XhoI CTCGAG 3 cut(s) 126, 698, 3992
XmiI GTMKAC 2 cut(s) 298, 1864
ZrmI AGTACT 2 cut(s) 4417, 4889
Zsp2I ATGCAT 3 cut(s) 1327, 1757, 4713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.