Rmu_sc0003347.1_g000005

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003347.1
OG0000042
Physical Location & Seq
Forward (+)
22389 .. 32405
10017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003347.1_g000005.1.cds

Sequence Viewer

Length: 4209 bp
atggagattcttgctgcaattgccggaaaacttgccgagttcactgttgaaccgattggacgccaagtgggttatctagctcactacaaaagcaactatcaaaatctgaagagcaaggttgaagacttgcgtgctgccagagacgaggttcaacataaggctgatgaagttgagagcagcggtaagagaattgagactaatgtcacgaactggaagtcaaaagtggatgtgatcatcacagacgcagagacattcttgaacgatggacgccatgcacagactgcatgtctccacggcttttgtcctaatttgatgctctgttatcagctaagcaagaaatcaacaaaattggtgaaggaaattgttgagctctatggaaaaaaggagttttccaattttgcatttaatgttcgcccacaagaggtatttctcttatctaccgggcattacagttcatttgattcaaggaattcaattgtgatgagagtcatggatgaactgagaaatcctaatacagaaatgattctggtctggggaatcggtggagtagggaagaccacacttgtggaagaagttcttaggcaagctaaggatgttaacttatttgatgatgtggtgatggtgagagatgttaaagagaacccagaccttgaaaaaatccaaaaagaaattgccttgaagttgggtttgagcattgaccaaaatcatactctagctcaaagagcgccccttctaggtgataggataaaacagaagaggactcttgtagttttagatgatgtttgggaagaaattgatctactggctgtcggagttccccgcctggttacttgcaaagtagtgctgacatgtagaagtcgaaaggaattgtccttggataggcgtacacaaacagatatttcactggatgttttaaatgaagaggaagcctggagtctatttgagaagatggctggtgatgttgtcaaagatagccgcatacgaagcgtagcaactcaagtagccaaaaaatgtggagctttgccggtcttgattgttaccgttgcaagggctctaaaagacagaaaaaagttgcatcattggaatgacaccttgagacgtcttagaggctttgacaacaaagaattgacggaaaaagcatacttggctctggagtggagttacgatcagttggaagataaagagcttaagcctttgttcttgctttgtgggattattgtagttaagaaccatatttatttggcagacttgttgaaatatggtttttgtttggatttgcttaaaaatgtcaataaaatagaagatgcacgagaggcattgtatacactcgttgacaagcttaaagattcttgcttgttgctggacagtgatatcaatatgcatgttagaatgcatgatctcgtatgcgaggttgctacccggattgcatccagagaacaccacgtcttatctgttggatatggtggtgaattgaaagaatggcctgagaaagatttctttaaaaggtgcagtacgatgtccttaaaatccagcaatattcccatgctttctcaactatctggggaatgccagaaactagaattgttttatttgtacaataaagatgttgcatcggtggaaataccagccaacttttttagtgaaatggagaaactgaaagtgttgggtttaattgaagtggatgtggtgtcactaccttcatctcttcagttcttaaagaatgttcagacgttgtgtttagaagactgcgagttggaagatgtagctctagttggatatttaagcaacttggagattcttagctttgcgcggttggaaagactagaagacttatcactgagaaacgtctttctcaaatgggaggctaaaaggggaggaagtaatgctagtcttttagagctaaaagacttgtctcaactaactgcattggagatttatattgaagatgcaaatattcttccatcaaacttgttctccagtaagttggtaagataccaaatatatattggcgatgtttggaagagcagaggatattgggagaaggctatggctgaaatgacactcaacacgctaaagctgaagctcgcttccagcaatgaattggaccacggtgtcaatacattgttgaagagatctgaagatttgtctttggatggaacagaaagtgtcaaaagtattgcccgtcaattacatgttgaagaatttcagcgactgatacacctccgtctccaaaacaatgttgatttcacctatatcattaataggaaggttgtgttccccaacttaacaacctttagcatatggcactgtgatcatctaagtttcttgttctcattttctatggctcaaagtctggtggagctcaaacatcttgaagtatccggatgtgcaataatggaagcgataatatcaacaagagatcaacctgatggagaaaatatcgatatcgtgttccgtaagttggaaagtctaacattaaagcaacttccaaacctcgatagattctgtactgaaagttatactgaattttcttccgtgatgaaatttgatgccgaactgggggcatccatctttgatcctacgagtagtaaaaaacttgatgtcgagaatgggactgctatacgagcatgtcttttttacccacaggtaaaatttccgagcttggagagactgaaaatcaatggggtcgggaagttgcacacactatggaacaataaatttgctgatcaagactctttttgccaactcaaagaagttgaagtttcaaattgcaacagtctgaaaaagatctttccagtctcagtagccagacgtctcctaaagctacattcgctggatgtgagaaagtgtgatgaagtggaggaaatcattactggtgaacaaggactagaaacagagtctcctcatttagtgttcccaaaagtaacacgtgtgacattttatggtctgcccaaactgagtagattctatcttgggattattgcttccaagtggccgttactcaaaaaactgtacatttttagctgtgggaaagtgaagatgtttgccgcagaacttccaatttcttcagaaagacatgagccgaaccctctaattgaacaatctctctttctaattgacaaggattcattccccaatttagaatacttgcagctagaagttgcgggtgagatttggtacggtccatcatcatccccagcacagttctttcccaaattaaaaactatttgcttacacaactgggcacggttttccaagcaagccgcaatacatttccttgagaaattacccaatcttgaggagatacaagtgagcttcgatgatgtttccacggaaatatttgtgaatgaagaaattaatggcggtgaggagatacatgcagtaaaaactttgacggtccgtttcatgcgcaagctcttgcaattagggaatgggaactctcaaacagcgggcccacttttcccaaacttggacgctctttatgtgtttttctgtaagatgttaaagagtgtagagtcatccgcaatatccttccgcaatctaacaactctggaagtagagagttgtgatggattggaatacttgacaagttattccgtagctaagagcttaatgcaactgacaacactggatgtgaacagttgtcgaagcctgagagcaattataggggcaagcaacgaagatgatcatgatacttgtgagattgctttcacccggttgcaacttttgtcactttattttctcccagaactgcaaggcttttgctcgggaaattgcattgtcagactcccatcctcaacagagttaaaagtccgtgactgcccgattgagttgaagatttcttctgaaggggtcctgctcagtaatccaaaaccagaaagagtagaaatagcaaaaccagaaatagcggaggaggtagacgataatggtgacggagaaaaagaaaaagatgaggatgttggcacgagacggatgaaggagtttcaagatccccaggctagggatgccattgaaggtgcatttgagatggcgtggttaataattatctcttctgtgattgtaatatggatagcttctctgttcaaaattctccatggttcatactcaccttccaagggtgctttcttgaatgattctactaacggtggcagtgccaagaagagaaatatgttgctggttgtttcctacccagatgatgagtccatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1402

Amino Acids

159.06

Weight (kDa)

5.65

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2111
AatII GACGTC 2 cut(s) 1102, 2815
Acc16I TGCGCA 1 cut(s) 3410
AccI GTMKAC 2 cut(s) 1322, 3918
AccII CGCG 1 cut(s) 1810
AccIII TCCGGA 1 cut(s) 2381
AclWI GGATC 2 cut(s) 2570, 3983
AcoI YGGCCR 1 cut(s) 2993
AcsI RAATTY 7 cut(s) 469, 2201, 2525, 2543, 2651, 2717, 4086
AcuI CTGAAG 6 cut(s) 128, 1691, 2099, 2157, 3051, 3867
AcvI CACGTG 1 cut(s) 2930
AcyI GRCGYC 4 cut(s) 61, 268, 1099, 2812
AfaI GTAC 6 cut(s) 886, 1513, 1595, 2509, 3014, 3179
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 4 cut(s) 848, 2191, 2927, 2929
AhdI GACNNNNNGTC 1 cut(s) 285
AjiI CACGTC 1 cut(s) 1444
AjnI CCWGG 3 cut(s) 822, 929, 3993
AjuI GAANNNNNNNTTGG 2 cut(s) 4106, 4138
AleI CACNNNNGTG 1 cut(s) 563
Alw21I GWGCWC 2 cut(s) 372, 2364
AlwI GGATC 2 cut(s) 2570, 3983
AlwNI CAGNNNCTG 1 cut(s) 2212
Ama87I CYCGRG 1 cut(s) 3766
Aor13HI TCCGGA 1 cut(s) 2381
AoxI GGCC 3 cut(s) 1481, 2993, 3451
ApaI GGGCCC 1 cut(s) 3455
ApeKI GCWGC 4 cut(s) 14, 134, 177, 3151
ApoI RAATTY 7 cut(s) 469, 2201, 2525, 2543, 2651, 2717, 4086
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AseI ATTAAT 2 cut(s) 2259, 3357
Asp700I GAANNNNTTC 4 cut(s) 522, 573, 1493, 2202
AspLEI GCGC 3 cut(s) 727, 1810, 3411
AspS9I GGNCC 6 cut(s) 2104, 3182, 3397, 3451, 3452, 3853
AsuC2I CCSGG 3 cut(s) 442, 1420, 3715
AvaI CYCGRG 1 cut(s) 3766
AvaII GGWCC 4 cut(s) 2104, 3182, 3397, 3853
BaeGI GKGCMC 2 cut(s) 3247, 3455
BanII GRGCYC 4 cut(s) 372, 1054, 2364, 3455
BauI CACGAG 2 cut(s) 1308, 3964
BbrPI CACGTG 1 cut(s) 2930
BbsI GAAGAC 4 cut(s) 129, 560, 1749, 1833
Bbv12I GWGCWC 2 cut(s) 372, 2364
BbvI GCAGC 3 cut(s) 121, 189, 3163
BceAI ACGGC 2 cut(s) 310, 2980
BciT130I CCWGG 3 cut(s) 824, 931, 3995
BciVI GTATCC 1 cut(s) 2389
BclI TGATCA 4 cut(s) 231, 2311, 2725, 3685
BcnI CCSGG 3 cut(s) 442, 1420, 3715
BfoI RGCGCY 1 cut(s) 728
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 2389
BglII AGATCT 2 cut(s) 2132, 2787
BisI GCNGC 7 cut(s) 15, 135, 178, 976, 3048, 3152, 3264
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 7 cut(s) 16, 136, 179, 977, 3049, 3153, 3265
Bme1390I CCNGG 6 cut(s) 442, 824, 931, 1420, 3715, 3995
Bme18I GGWCC 4 cut(s) 2104, 3182, 3397, 3853
BmeRI GACNNNNNGTC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 3766
BmgBI CACGTC 1 cut(s) 1444
BmgT120I GGNCC 6 cut(s) 2104, 3182, 3397, 3451, 3452, 3853
BmiI GGNNCC 2 cut(s) 3453, 3854
BmrFI CCNGG 6 cut(s) 442, 824, 931, 1420, 3715, 3995
BmrI ACTGGG 2 cut(s) 2567, 3250
BmsI GCATC 9 cut(s) 303, 1084, 1294, 1436, 1619, 1936, 2539, 2573, 3994
BmuI ACTGGG 2 cut(s) 2567, 3250
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 4 cut(s) 129, 560, 1749, 1833
BpmI CTGGAG 3 cut(s) 952, 1172, 1960
Bpu10I CCTNAGC 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 4 cut(s) 981, 1114, 3299, 3317
BpuMI CCSGG 3 cut(s) 442, 1420, 3715
Bsa29I ATCGAT 1 cut(s) 2442
BsaAI YACGTR 1 cut(s) 2930
BsaHI GRCGYC 4 cut(s) 61, 268, 1099, 2812
BsaJI CCNNGG 7 cut(s) 292, 873, 2107, 3330, 3993, 4093, 4113
BsaWI WCCGGW 1 cut(s) 2381
BsaXI ACNNNNNCTCC 4 cut(s) 1958, 1988, 2884, 2914
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 9 cut(s) 215, 807, 909, 1977, 2562, 2795, 2878, 3245, 3633
Bse3DI GCAATG 1 cut(s) 2101
BseAI TCCGGA 1 cut(s) 2381
BseBI CCWGG 3 cut(s) 824, 931, 3995
BseCI ATCGAT 1 cut(s) 2442
BseDI CCNNGG 7 cut(s) 292, 873, 2107, 3330, 3993, 4093, 4113
BseMI GCAATG 1 cut(s) 2101
BseMII CTCAG 7 cut(s) 491, 1476, 1829, 2814, 2948, 3644, 3874
BseNI ACTGG 9 cut(s) 215, 807, 909, 1977, 2562, 2795, 2878, 3245, 3633
BseRI GAGGAG 4 cut(s) 2892, 3314, 3383, 3926
BseSI GKGCMC 2 cut(s) 3247, 3455
BseXI GCAGC 3 cut(s) 121, 189, 3163
BseYI CCCAGC 1 cut(s) 3196
BsgI GTGCAG 1 cut(s) 1528
Bsh1236I CGCG 1 cut(s) 1810
BshFI GGCC 3 cut(s) 1483, 2995, 3453
BshVI ATCGAT 1 cut(s) 2442
BsiHKAI GWGCWC 2 cut(s) 372, 2364
BsiHKCI CYCGRG 1 cut(s) 3766
BsiSI CCGG 6 cut(s) 24, 441, 1025, 1420, 2382, 3715
BslFI GGGAC 1 cut(s) 2626
BsmBI CGTCTC 5 cut(s) 135, 1090, 2231, 2819, 3961
BsmFI GGGAC 1 cut(s) 2626
BsmI GAATGC 2 cut(s) 1395, 1571
BsnI GGCC 3 cut(s) 1483, 2995, 3453
BsoBI CYCGRG 1 cut(s) 3766
Bsp120I GGGCCC 1 cut(s) 3451
Bsp1286I GDGCHC 5 cut(s) 372, 1054, 2364, 3247, 3455
Bsp13I TCCGGA 1 cut(s) 2381
Bsp1407I TGTACA 2 cut(s) 1593, 3012
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 1 cut(s) 4093
BspANI GGCC 3 cut(s) 1483, 2995, 3453
BspCNI CTCAG 7 cut(s) 492, 1477, 1830, 2813, 2949, 3645, 3873
BspDI ATCGAT 1 cut(s) 2442
BspEI TCCGGA 1 cut(s) 2381
BspFNI CGCG 1 cut(s) 1810
BspHI TCATGA 1 cut(s) 3688
BspLI GGNNCC 2 cut(s) 3453, 3854
BspPI GGATC 2 cut(s) 2570, 3983
BspQI GCTCTTC 2 cut(s) 104, 2015
BspTI CTTAAG 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 2101
BsrFI RCCGGY 1 cut(s) 1024
BsrGI TGTACA 2 cut(s) 1593, 3012
BsrI ACTGG 9 cut(s) 215, 807, 909, 1977, 2562, 2795, 2878, 3245, 3633
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 7 cut(s) 292, 873, 2107, 3330, 3993, 4093, 4113
BssNAI GTATAC 1 cut(s) 1323
BssNI GRCGYC 4 cut(s) 61, 268, 1099, 2812
BssSI CACGAG 2 cut(s) 1308, 3964
BssT1I CCWWGG 3 cut(s) 873, 4093, 4113
Bst1107I GTATAC 1 cut(s) 1323
Bst2BI CACGAG 2 cut(s) 1308, 3964
Bst2UI CCWGG 3 cut(s) 824, 931, 3995
Bst6I CTCTTC 8 cut(s) 104, 749, 915, 1710, 2015, 2123, 4054, 4154
BstACI GRCGYC 4 cut(s) 61, 268, 1099, 2812
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 281
BstAUI TGTACA 2 cut(s) 1593, 3012
BstBAI YACGTR 1 cut(s) 2930
BstC8I GCNNGC 7 cut(s) 132, 585, 2085, 3261, 3413, 3451, 3673
BstDSI CCRYGG 4 cut(s) 292, 2107, 3330, 4093
BstENI CCTNNNNNAGG 1 cut(s) 877
BstFNI CGCG 1 cut(s) 1810
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 3 cut(s) 727, 1810, 3411
BstMWI GCNNNNNNNGC 9 cut(s) 20, 281, 722, 984, 1145, 1313, 2624, 2830, 4004
BstNI CCWGG 3 cut(s) 824, 931, 3995
BstNSI RCATGY 6 cut(s) 288, 852, 1385, 2195, 2631, 3380
BstPAI GACNNNNGTC 1 cut(s) 200
BstSCI CCNGG 6 cut(s) 440, 822, 929, 1418, 3713, 3993
BstSLI GKGCMC 2 cut(s) 3247, 3455
BstUI CGCG 1 cut(s) 1810
BstV1I GCAGC 3 cut(s) 121, 189, 3163
BstV2I GAAGAC 4 cut(s) 129, 560, 1749, 1833
BstX2I RGATCY 3 cut(s) 2132, 2787, 3988
BstXI CCANNNNNNTGG 2 cut(s) 565, 1984
BstYI RGATCY 3 cut(s) 2132, 2787, 3988
BstZ17I GTATAC 1 cut(s) 1323
Bsu15I ATCGAT 1 cut(s) 2442
BsuI GTATCC 1 cut(s) 2389
BsuRI GGCC 3 cut(s) 1483, 2995, 3453
BsuTUI ATCGAT 1 cut(s) 2442
BtgI CCRYGG 4 cut(s) 292, 2107, 3330, 4093
BtgZI GCGATG 1 cut(s) 2025
BtrI CACGTC 1 cut(s) 1444
BtsI GCAGTG 1 cut(s) 4156
BtsIMutI CAGTG 7 cut(s) 42, 902, 1372, 1835, 2305, 3626, 4156
Cac8I GCNNGC 7 cut(s) 132, 585, 2085, 3261, 3413, 3451, 3673
CaiI CAGNNNCTG 1 cut(s) 2212
CciI TCATGA 1 cut(s) 3688
CfoI GCGC 3 cut(s) 727, 1810, 3411
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 6 cut(s) 2104, 3182, 3397, 3451, 3452, 3853
ClaI ATCGAT 1 cut(s) 2442
CpoI CGGWCCG 1 cut(s) 3397
CseI GACGC 4 cut(s) 69, 251, 276, 3482
Csp6I GTAC 6 cut(s) 885, 1512, 1594, 2508, 3013, 3178
CspCI CAANNNNNGTGG 4 cut(s) 281, 316, 994, 1029
CspI CGGWCCG 1 cut(s) 3397
CviQI GTAC 6 cut(s) 885, 1512, 1594, 2508, 3013, 3178
DraI TTTAAA 2 cut(s) 915, 1501
DrdI GACNNNNNNGTC 1 cut(s) 2111
DriI GACNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 2111
EaeI YGGCCR 1 cut(s) 2993
Eam1104I CTCTTC 8 cut(s) 104, 749, 915, 1710, 2015, 2123, 4054, 4154
Eam1105I GACNNNNNGTC 1 cut(s) 285
EarI CTCTTC 8 cut(s) 104, 749, 915, 1710, 2015, 2123, 4054, 4154
Ecl136II GAGCTC 2 cut(s) 370, 2362
Eco130I CCWWGG 3 cut(s) 873, 4093, 4113
Eco24I GRGCYC 4 cut(s) 372, 1054, 2364, 3455
Eco32I GATATC 2 cut(s) 1372, 2446
Eco47I GGWCC 4 cut(s) 2104, 3182, 3397, 3853
Eco53kI GAGCTC 2 cut(s) 370, 2362
Eco57I CTGAAG 6 cut(s) 128, 1691, 2099, 2157, 3051, 3867
Eco72I CACGTG 1 cut(s) 2930
Eco88I CYCGRG 1 cut(s) 3766
EcoICRI GAGCTC 2 cut(s) 370, 2362
EcoNI CCTNNNNNAGG 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 3853
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 3 cut(s) 822, 929, 3993
EcoRV GATATC 2 cut(s) 1372, 2446
EcoT14I CCWWGG 3 cut(s) 873, 4093, 4113
EcoT22I ATGCAT 2 cut(s) 1383, 1395
EcoT38I GRGCYC 4 cut(s) 372, 1054, 2364, 3455
ErhI CCWWGG 3 cut(s) 873, 4093, 4113
Esp3I CGTCTC 5 cut(s) 135, 1090, 2231, 2819, 3961
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 2626
FauI CCCGC 3 cut(s) 827, 3157, 3442
FauNDI CATATG 1 cut(s) 2300
FbaI TGATCA 4 cut(s) 231, 2311, 2725, 3685
FblI GTMKAC 2 cut(s) 1322, 3918
Fnu4HI GCNGC 7 cut(s) 15, 135, 178, 976, 3048, 3152, 3264
FriOI GRGCYC 4 cut(s) 372, 1054, 2364, 3455
Fsp4HI GCNGC 7 cut(s) 15, 135, 178, 976, 3048, 3152, 3264
FspI TGCGCA 1 cut(s) 3410
GlaI GCGC 3 cut(s) 726, 1809, 3410
GluI GCNGC 7 cut(s) 15, 135, 178, 976, 3048, 3152, 3264
GsaI CCCAGC 1 cut(s) 3200
GsuI CTGGAG 3 cut(s) 952, 1172, 1960
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 3 cut(s) 1483, 2995, 3453
HapII CCGG 6 cut(s) 24, 441, 1025, 1420, 2382, 3715
HgaI GACGC 4 cut(s) 69, 251, 276, 3482
HhaI GCGC 3 cut(s) 727, 1810, 3411
Hin1I GRCGYC 4 cut(s) 61, 268, 1099, 2812
Hin6I GCGC 3 cut(s) 725, 1808, 3409
HinP1I GCGC 3 cut(s) 725, 1808, 3409
HincII GTYRAC 2 cut(s) 598, 1333
HindII GTYRAC 2 cut(s) 598, 1333
HindIII AAGCTT 1 cut(s) 1337
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 6 cut(s) 24, 441, 1025, 1420, 2382, 3715
Hpy166II GTNNAC 8 cut(s) 42, 598, 887, 1323, 1333, 2879, 3637, 3919
Hpy188I TCNGA 9 cut(s) 108, 812, 1728, 2137, 2658, 2781, 3070, 3785, 3847
Hpy8I GTNNAC 8 cut(s) 42, 598, 887, 1323, 1333, 2879, 3637, 3919
HpyCH4IV ACGT 6 cut(s) 1099, 1443, 1730, 1845, 2812, 2929
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 281, 722, 984, 1145, 1313, 2624, 2830, 4004
HpySE526I ACGT 6 cut(s) 1099, 1443, 1730, 1845, 2812, 2929
Hsp92I GRCGYC 4 cut(s) 61, 268, 1099, 2812
HspAI GCGC 3 cut(s) 725, 1808, 3409
Kpn2I TCCGGA 1 cut(s) 2381
Ksp22I TGATCA 4 cut(s) 231, 2311, 2725, 3685
KspAI GTTAAC 1 cut(s) 598
LguI GCTCTTC 2 cut(s) 104, 2015
LmnI GCTCC 2 cut(s) 1016, 2359
Lsp1109I GCAGC 3 cut(s) 121, 189, 3163
LweI GCATC 9 cut(s) 303, 1084, 1294, 1436, 1619, 1936, 2539, 2573, 3994
MaeII ACGT 6 cut(s) 1099, 1443, 1730, 1845, 2812, 2929
MfeI CAATTG 2 cut(s) 18, 474
MflI RGATCY 3 cut(s) 2132, 2787, 3988
MhlI GDGCHC 5 cut(s) 372, 1054, 2364, 3247, 3455
MlyI GAGTC 8 cut(s) 495, 754, 943, 2726, 2906, 3524, 3780, 4208
MmeI TCCRAC 7 cut(s) 790, 1152, 1435, 1734, 1753, 1794, 2442
Mph1103I ATGCAT 2 cut(s) 1383, 1395
MroI TCCGGA 1 cut(s) 2381
MroXI GAANNNNTTC 4 cut(s) 522, 573, 1493, 2202
MslI CAYNNNNRTG 2 cut(s) 563, 1083
MspA1I CMGCKG 2 cut(s) 180, 3449
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 6 cut(s) 24, 441, 1025, 1420, 2382, 3715
MspR9I CCNGG 6 cut(s) 442, 824, 931, 1420, 3715, 3995
MunI CAATTG 2 cut(s) 18, 474
Mva1269I GAATGC 2 cut(s) 1395, 1571
MvaI CCWGG 3 cut(s) 824, 931, 3995
MvnI CGCG 1 cut(s) 1810
MwoI GCNNNNNNNGC 9 cut(s) 20, 281, 722, 984, 1145, 1313, 2624, 2830, 4004
NciI CCSGG 3 cut(s) 442, 1420, 3715
NcoI CCATGG 1 cut(s) 4093
NdeI CATATG 1 cut(s) 2300
NlaIV GGNNCC 2 cut(s) 3453, 3854
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 6 cut(s) 202, 1689, 2932, 3729, 3815, 3929
NsbI TGCGCA 1 cut(s) 3410
NsiI ATGCAT 2 cut(s) 1383, 1395
NspI RCATGY 6 cut(s) 288, 852, 1385, 2195, 2631, 3380
OliI CACNNNNGTG 1 cut(s) 563
PagI TCATGA 1 cut(s) 3688
PciI ACATGT 2 cut(s) 848, 2191
PciSI GCTCTTC 2 cut(s) 104, 2015
PctI GAATGC 2 cut(s) 1395, 1571
PdmI GAANNNNTTC 4 cut(s) 522, 573, 1493, 2202
PkrI GCNGC 7 cut(s) 16, 136, 179, 977, 3049, 3153, 3265
PleI GAGTC 8 cut(s) 494, 754, 942, 2726, 2905, 3523, 3780, 4207
PmaCI CACGTG 1 cut(s) 2930
PmlI CACGTG 1 cut(s) 2930
PpsI GAGTC 8 cut(s) 494, 754, 942, 2726, 2905, 3523, 3780, 4207
Ppu21I YACGTR 1 cut(s) 2930
PpuMI RGGWCCY 1 cut(s) 3853
PscI ACATGT 2 cut(s) 848, 2191
PshAI GACNNNNGTC 1 cut(s) 200
PshBI ATTAAT 2 cut(s) 2259, 3357
Psp124BI GAGCTC 2 cut(s) 372, 2364
Psp5II RGGWCCY 1 cut(s) 3853
Psp6I CCWGG 3 cut(s) 822, 929, 3993
PspCI CACGTG 1 cut(s) 2930
PspFI CCCAGC 1 cut(s) 3196
PspGI CCWGG 3 cut(s) 822, 929, 3993
PspN4I GGNNCC 2 cut(s) 3453, 3854
PspOMI GGGCCC 1 cut(s) 3451
PspPI GGNCC 6 cut(s) 2104, 3182, 3397, 3451, 3452, 3853
PspPPI RGGWCCY 1 cut(s) 3853
PstNI CAGNNNCTG 1 cut(s) 2212
PsuI RGATCY 3 cut(s) 2132, 2787, 3988
RsaI GTAC 6 cut(s) 886, 1513, 1595, 2509, 3014, 3179
RsaNI GTAC 6 cut(s) 885, 1512, 1594, 2508, 3013, 3178
RseI CAYNNNNRTG 2 cut(s) 563, 1083
Rsr2I CGGWCCG 1 cut(s) 3397
RsrII CGGWCCG 1 cut(s) 3397
SacI GAGCTC 2 cut(s) 372, 2364
SapI GCTCTTC 2 cut(s) 104, 2015
SatI GCNGC 7 cut(s) 15, 135, 178, 976, 3048, 3152, 3264
Sau96I GGNCC 6 cut(s) 2104, 3182, 3397, 3451, 3452, 3853
SchI GAGTC 8 cut(s) 495, 754, 943, 2726, 2906, 3524, 3780, 4208
ScrFI CCNGG 6 cut(s) 442, 824, 931, 1420, 3715, 3995
SduI GDGCHC 5 cut(s) 372, 1054, 2364, 3247, 3455
SfaNI GCATC 9 cut(s) 303, 1084, 1294, 1436, 1619, 1936, 2539, 2573, 3994
SinI GGWCC 4 cut(s) 2104, 3182, 3397, 3853
SmiMI CAYNNNNRTG 2 cut(s) 563, 1083
SmlI CTYRAG 5 cut(s) 996, 1093, 1187, 3278, 3296
SmoI CTYRAG 5 cut(s) 996, 1093, 1187, 3278, 3296
SspI AATATT 3 cut(s) 1537, 1954, 3339
SstI GAGCTC 2 cut(s) 372, 2364
StyD4I CCNGG 6 cut(s) 440, 822, 929, 1418, 3713, 3993
StyI CCWWGG 3 cut(s) 873, 4093, 4113
TaiI ACGT 6 cut(s) 1102, 1446, 1733, 1848, 2815, 2932
TaqI TCGA 6 cut(s) 859, 2442, 2496, 2604, 3318, 3646
TatI WGTACW 3 cut(s) 1593, 2507, 3012
TauI GCSGC 3 cut(s) 978, 3050, 3266
TscAI CASTG 7 cut(s) 49, 909, 1372, 1842, 2312, 3633, 4156
TseFI GTSAC 6 cut(s) 202, 1689, 2932, 3729, 3815, 3929
TseI GCWGC 4 cut(s) 14, 134, 177, 3151
Tsp45I GTSAC 6 cut(s) 202, 1689, 2932, 3729, 3815, 3929
TspRI CASTG 7 cut(s) 49, 909, 1372, 1842, 2312, 3633, 4156
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 4 cut(s) 2104, 3182, 3397, 3853
VspI ATTAAT 2 cut(s) 2259, 3357
XagI CCTNNNNNAGG 1 cut(s) 877
XapI RAATTY 7 cut(s) 469, 2201, 2525, 2543, 2651, 2717, 4086
XceI RCATGY 6 cut(s) 288, 852, 1385, 2195, 2631, 3380
XcmI CCANNNNNNNNNTGG 2 cut(s) 2003, 2098
XmiI GTMKAC 2 cut(s) 1322, 3918
XmnI GAANNNNTTC 4 cut(s) 522, 573, 1493, 2202
ZraI GACGTC 2 cut(s) 1100, 2813
Zsp2I ATGCAT 2 cut(s) 1383, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.