disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 94 - 257 | 1.7e-31 | NB-ARC domain |
| LRR_14 | PF23598 | 398 - 681 | 1.9e-13 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 629 - 744 | 6.7e-12 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 753 - 831 | 1.1e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 758 |
| AatII | GACGTC | 1 cut(s) | 1770 |
| Acc36I | ACCTGC | 1 cut(s) | 758 |
| Acc65I | GGTACC | 1 cut(s) | 23 |
| AccB1I | GGYRCC | 1 cut(s) | 23 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 3637, 4072 |
| AccI | GTMKAC | 4 cut(s) | 1018, 2397, 2484, 3983 |
| AciI | CCGC | 3 cut(s) | 2490, 2995, 4411 |
| AclWI | GGATC | 5 cut(s) | 779, 1107, 3713, 3810, 4302 |
| AcoI | YGGCCR | 4 cut(s) | 1145, 1336, 2627, 3519 |
| AcsI | RAATTY | 8 cut(s) | 471, 748, 985, 1651, 2269, 2921, 3110, 3323 |
| AcyI | GRCGYC | 2 cut(s) | 73, 1767 |
| AfaI | GTAC | 9 cut(s) | 25, 243, 344, 1312, 1620, 1775, 2028, 2228, 3591 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 2592, 3001, 3334, 3637, 3883, 4072 |
| AflII | CTTAAG | 2 cut(s) | 848, 1004 |
| AflIII | ACRYGT | 2 cut(s) | 2115, 3454 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 825 |
| AhlI | ACTAGT | 1 cut(s) | 2854 |
| AjiI | CACGTC | 1 cut(s) | 542 |
| AjnI | CCWGG | 2 cut(s) | 2621, 3636 |
| AleI | CACNNNNGTG | 1 cut(s) | 814 |
| Alw21I | GWGCWC | 3 cut(s) | 541, 1587, 1752 |
| Alw26I | GTCTC | 7 cut(s) | 399, 515, 1314, 3332, 3464, 3648, 3878 |
| AlwI | GGATC | 5 cut(s) | 779, 1107, 3713, 3810, 4302 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1885, 3637, 3740 |
| ApaI | GGGCCC | 1 cut(s) | 3026 |
| ApeKI | GCWGC | 9 cut(s) | 980, 1608, 1697, 3697, 3737, 3740, 3857, 4076, 4186 |
| ApoI | RAATTY | 8 cut(s) | 471, 748, 985, 1651, 2269, 2921, 3110, 3323 |
| AseI | ATTAAT | 1 cut(s) | 1929 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 752, 2185, 3456 |
| Asp718I | GGTACC | 1 cut(s) | 23 |
| AspLEI | GCGC | 2 cut(s) | 2823, 4225 |
| AspS9I | GGNCC | 4 cut(s) | 2680, 2888, 3022, 3023 |
| AsuC2I | CCSGG | 2 cut(s) | 2897, 4241 |
| AsuHPI | GGTGA | 7 cut(s) | 220, 782, 1458, 1880, 1981, 2659, 4243 |
| AsuII | TTCGAA | 1 cut(s) | 890 |
| AsuNHI | GCTAGC | 1 cut(s) | 3860 |
| AvaII | GGWCC | 1 cut(s) | 2888 |
| AxyI | CCTNAGG | 1 cut(s) | 3879 |
| BaeGI | GKGCMC | 1 cut(s) | 3026 |
| BalI | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| BanI | GGYRCC | 1 cut(s) | 23 |
| BanII | GRGCYC | 4 cut(s) | 1587, 1752, 3026, 4097 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2508, 2540 |
| BauI | CACGAG | 1 cut(s) | 2407 |
| BbsI | GAAGAC | 2 cut(s) | 1295, 2447 |
| Bbv12I | GWGCWC | 3 cut(s) | 541, 1587, 1752 |
| BbvI | GCAGC | 9 cut(s) | 992, 1595, 1684, 3709, 3724, 3727, 3844, 4063, 4173 |
| BceAI | ACGGC | 1 cut(s) | 2614 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3053, 3087 |
| BciT130I | CCWGG | 2 cut(s) | 2623, 3638 |
| BciVI | GTATCC | 1 cut(s) | 1256 |
| BclI | TGATCA | 1 cut(s) | 3484 |
| BcnI | CCSGG | 2 cut(s) | 2897, 4241 |
| BcoDI | GTCTC | 7 cut(s) | 399, 515, 1314, 3332, 3464, 3648, 3878 |
| BcuI | ACTAGT | 1 cut(s) | 2854 |
| BfmI | CTRYAG | 2 cut(s) | 3395, 3744 |
| BfrI | CTTAAG | 2 cut(s) | 848, 1004 |
| BfuAI | ACCTGC | 1 cut(s) | 758 |
| BfuI | GTATCC | 1 cut(s) | 1256 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3854 |
| BglII | AGATCT | 2 cut(s) | 1150, 2149 |
| BisI | GCNGC | 9 cut(s) | 981, 1609, 1698, 3698, 3738, 3741, 3858, 4077, 4187 |
| BlpI | GCTNAGC | 2 cut(s) | 1361, 1604 |
| BlsI | GCNGC | 9 cut(s) | 982, 1610, 1699, 3699, 3739, 3742, 3859, 4078, 4188 |
| Bme1390I | CCNGG | 4 cut(s) | 2623, 2897, 3638, 4241 |
| Bme18I | GGWCC | 1 cut(s) | 2888 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 825 |
| BmgBI | CACGTC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 4 cut(s) | 2680, 2888, 3022, 3023 |
| BmiI | GGNNCC | 7 cut(s) | 25, 171, 3023, 3024, 3729, 4096, 4138 |
| BmrFI | CCNGG | 4 cut(s) | 2623, 2897, 3638, 4241 |
| BmrI | ACTGGG | 2 cut(s) | 1717, 2936 |
| BmtI | GCTAGC | 1 cut(s) | 3864 |
| BmuI | ACTGGG | 2 cut(s) | 1717, 2936 |
| BpiI | GAAGAC | 2 cut(s) | 1295, 2447 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1157, 1189, 2944, 2976 |
| BpmI | CTGGAG | 2 cut(s) | 2159, 3659 |
| Bpu10I | CCTNAGC | 3 cut(s) | 4089, 4141, 4358 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1361, 1604 |
| Bpu14I | TTCGAA | 1 cut(s) | 890 |
| BpuEI | CTTGAG | 7 cut(s) | 1016, 2161, 2936, 3488, 3841, 4238, 4350 |
| BpuMI | CCSGG | 2 cut(s) | 2897, 4241 |
| Bsa29I | ATCGAT | 1 cut(s) | 1528 |
| BsaBI | GATNNNNATC | 2 cut(s) | 902, 3672 |
| BsaHI | GRCGYC | 2 cut(s) | 73, 1767 |
| BsaI | GGTCTC | 2 cut(s) | 3464, 3878 |
| BsaJI | CCNNGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| BsaWI | WCCGGW | 2 cut(s) | 26, 3869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3736, 3766 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 2592, 3001, 3334, 3637, 3883, 4072 |
| Bse118I | RCCGGY | 1 cut(s) | 3252 |
| Bse1I | ACTGG | 9 cut(s) | 1458, 1712, 2942, 3148, 3195, 3503, 3530, 3701, 4041 |
| Bse21I | CCTNAGG | 1 cut(s) | 3879 |
| Bse3DI | GCAATG | 3 cut(s) | 989, 1323, 1768 |
| Bse8I | GATNNNNATC | 2 cut(s) | 902, 3672 |
| BseBI | CCWGG | 2 cut(s) | 2623, 3638 |
| BseCI | ATCGAT | 1 cut(s) | 1528 |
| BseDI | CCNNGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| BseGI | GGATG | 9 cut(s) | 448, 462, 982, 1636, 1717, 1836, 2060, 2435, 2890 |
| BseJI | GATNNNNATC | 2 cut(s) | 902, 3672 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 2592, 3001, 3334, 3637, 3883, 4072 |
| BseMI | GCAATG | 3 cut(s) | 989, 1323, 1768 |
| BseMII | CTCAG | 9 cut(s) | 480, 1496, 1902, 3573, 3639, 3870, 4103, 4236, 4362 |
| BseNI | ACTGG | 9 cut(s) | 1458, 1712, 2942, 3148, 3195, 3503, 3530, 3701, 4041 |
| BseRI | GAGGAG | 3 cut(s) | 857, 3896, 4115 |
| BseSI | GKGCMC | 1 cut(s) | 3026 |
| BseXI | GCAGC | 9 cut(s) | 992, 1595, 1684, 3709, 3724, 3727, 3844, 4063, 4173 |
| BsgI | GTGCAG | 1 cut(s) | 3756 |
| BshNI | GGYRCC | 1 cut(s) | 23 |
| BshVI | ATCGAT | 1 cut(s) | 1528 |
| BsiHKAI | GWGCWC | 3 cut(s) | 541, 1587, 1752 |
| BsiSI | CCGG | 6 cut(s) | 27, 556, 2897, 3253, 3870, 4240 |
| BslFI | GGGAC | 5 cut(s) | 639, 2261, 2535, 2882, 2924 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 2592, 3001, 3334, 3637, 3883, 4072 |
| BsmAI | GTCTC | 7 cut(s) | 399, 515, 1314, 3332, 3464, 3648, 3878 |
| BsmFI | GGGAC | 5 cut(s) | 639, 2261, 2535, 2882, 2924 |
| BsmI | GAATGC | 1 cut(s) | 1726 |
| Bso31I | GGTCTC | 2 cut(s) | 3464, 3878 |
| Bsp119I | TTCGAA | 1 cut(s) | 890 |
| Bsp120I | GGGCCC | 1 cut(s) | 3022 |
| Bsp1286I | GDGCHC | 5 cut(s) | 541, 1587, 1752, 3026, 4097 |
| Bsp1407I | TGTACA | 1 cut(s) | 2026 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1361, 1604 |
| Bsp19I | CCATGG | 2 cut(s) | 2010, 2064 |
| BspACI | CCGC | 3 cut(s) | 2490, 2995, 4411 |
| BspCNI | CTCAG | 9 cut(s) | 481, 1497, 1903, 3572, 3638, 3871, 4102, 4237, 4363 |
| BspDI | ATCGAT | 1 cut(s) | 1528 |
| BspHI | TCATGA | 1 cut(s) | 1030 |
| BspLI | GGNNCC | 7 cut(s) | 25, 171, 3023, 3024, 3729, 4096, 4138 |
| BspMI | ACCTGC | 1 cut(s) | 758 |
| BspOI | GCTAGC | 1 cut(s) | 3864 |
| BspPI | GGATC | 5 cut(s) | 779, 1107, 3713, 3810, 4302 |
| BspQI | GCTCTTC | 3 cut(s) | 529, 3912, 4194 |
| BspT104I | TTCGAA | 1 cut(s) | 890 |
| BspT107I | GGYRCC | 1 cut(s) | 23 |
| BspTI | CTTAAG | 2 cut(s) | 848, 1004 |
| BspTNI | GGTCTC | 2 cut(s) | 3464, 3878 |
| BsrDI | GCAATG | 3 cut(s) | 989, 1323, 1768 |
| BsrFI | RCCGGY | 1 cut(s) | 3252 |
| BsrGI | TGTACA | 1 cut(s) | 2026 |
| BsrI | ACTGG | 9 cut(s) | 1458, 1712, 2942, 3148, 3195, 3503, 3530, 3701, 4041 |
| BssAI | RCCGGY | 1 cut(s) | 3252 |
| BssECI | CCNNGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| BssNI | GRCGYC | 2 cut(s) | 73, 1767 |
| BssSI | CACGAG | 1 cut(s) | 2407 |
| BssT1I | CCWWGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| Bst2BI | CACGAG | 1 cut(s) | 2407 |
| Bst2UI | CCWGG | 2 cut(s) | 2623, 3638 |
| Bst4CI | ACNGT | 7 cut(s) | 58, 1553, 2711, 3172, 3961, 3973, 3981 |
| Bst6I | CTCTTC | 7 cut(s) | 529, 1272, 1796, 2064, 2511, 3912, 4194 |
| BstACI | GRCGYC | 2 cut(s) | 73, 1767 |
| BstAFI | CTTAAG | 2 cut(s) | 848, 1004 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 977, 2212, 2467 |
| BstAUI | TGTACA | 1 cut(s) | 2026 |
| BstBI | TTCGAA | 1 cut(s) | 890 |
| BstC8I | GCNNGC | 6 cut(s) | 1573, 1613, 3862, 4191, 4227, 4415 |
| BstDSI | CCRYGG | 2 cut(s) | 2010, 2064 |
| BstF5I | GGATG | 9 cut(s) | 448, 462, 982, 1636, 1717, 1836, 2060, 2435, 2890 |
| BstHHI | GCGC | 2 cut(s) | 2823, 4225 |
| BstMAI | GTCTC | 7 cut(s) | 399, 515, 1314, 3332, 3464, 3648, 3878 |
| BstNI | CCWGG | 2 cut(s) | 2623, 3638 |
| BstNSI | RCATGY | 6 cut(s) | 224, 2119, 2618, 2821, 3062, 3458 |
| BstSCI | CCNGG | 4 cut(s) | 2621, 2895, 3636, 4239 |
| BstSFI | CTRYAG | 2 cut(s) | 3395, 3744 |
| BstSLI | GKGCMC | 1 cut(s) | 3026 |
| BstV1I | GCAGC | 9 cut(s) | 992, 1595, 1684, 3709, 3724, 3727, 3844, 4063, 4173 |
| BstV2I | GAAGAC | 2 cut(s) | 1295, 2447 |
| BstX2I | RGATCY | 3 cut(s) | 784, 1150, 2149 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 934 |
| BstYI | RGATCY | 3 cut(s) | 784, 1150, 2149 |
| Bsu15I | ATCGAT | 1 cut(s) | 1528 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3879 |
| BsuI | GTATCC | 1 cut(s) | 1256 |
| BsuTUI | ATCGAT | 1 cut(s) | 1528 |
| BtgI | CCRYGG | 2 cut(s) | 2010, 2064 |
| BtrI | CACGTC | 1 cut(s) | 542 |
| BtsCI | GGATG | 9 cut(s) | 448, 462, 982, 1636, 1717, 1836, 2060, 2435, 2890 |
| BtsI | GCAGTG | 3 cut(s) | 3004, 3474, 3773 |
| BtsIMutI | CAGTG | 9 cut(s) | 1736, 2949, 3004, 3474, 3510, 3773, 3966, 3969, 4034 |
| BveI | ACCTGC | 1 cut(s) | 758 |
| Cac8I | GCNNGC | 6 cut(s) | 1573, 1613, 3862, 4191, 4227, 4415 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1885, 3637, 3740 |
| CciI | TCATGA | 1 cut(s) | 1030 |
| CfoI | GCGC | 2 cut(s) | 2823, 4225 |
| Cfr10I | RCCGGY | 1 cut(s) | 3252 |
| Cfr13I | GGNCC | 4 cut(s) | 2680, 2888, 3022, 3023 |
| ClaI | ATCGAT | 1 cut(s) | 1528 |
| CseI | GACGC | 2 cut(s) | 81, 4275 |
| Csp6I | GTAC | 9 cut(s) | 24, 242, 343, 1311, 1619, 1774, 2027, 2227, 3590 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3979, 4014, 4023, 4058 |
| CviQI | GTAC | 9 cut(s) | 24, 242, 343, 1311, 1619, 1774, 2027, 2227, 3590 |
| DraI | TTTAAA | 2 cut(s) | 1201, 1384 |
| DriI | GACNNNNNGTC | 1 cut(s) | 825 |
| EaeI | YGGCCR | 4 cut(s) | 1145, 1336, 2627, 3519 |
| Eam1104I | CTCTTC | 7 cut(s) | 529, 1272, 1796, 2064, 2511, 3912, 4194 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 825 |
| EarI | CTCTTC | 7 cut(s) | 529, 1272, 1796, 2064, 2511, 3912, 4194 |
| EciI | GGCGGA | 1 cut(s) | 4400 |
| Ecl136II | GAGCTC | 2 cut(s) | 1585, 1750 |
| Eco130I | CCWWGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| Eco147I | AGGCCT | 1 cut(s) | 3664 |
| Eco24I | GRGCYC | 4 cut(s) | 1587, 1752, 3026, 4097 |
| Eco31I | GGTCTC | 2 cut(s) | 3464, 3878 |
| Eco32I | GATATC | 1 cut(s) | 2049 |
| Eco47I | GGWCC | 1 cut(s) | 2888 |
| Eco53kI | GAGCTC | 2 cut(s) | 1585, 1750 |
| Eco81I | CCTNAGG | 1 cut(s) | 3879 |
| EcoICRI | GAGCTC | 2 cut(s) | 1585, 1750 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3022, 3023 |
| EcoRI | GAATTC | 2 cut(s) | 471, 2269 |
| EcoRII | CCWGG | 2 cut(s) | 2621, 3636 |
| EcoRV | GATATC | 1 cut(s) | 2049 |
| EcoT14I | CCWWGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| EcoT22I | ATGCAT | 4 cut(s) | 699, 1059, 2472, 3076 |
| EcoT38I | GRGCYC | 4 cut(s) | 1587, 1752, 3026, 4097 |
| ErhI | CCWWGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| FaqI | GGGAC | 5 cut(s) | 639, 2261, 2535, 2882, 2924 |
| FauNDI | CATATG | 2 cut(s) | 1107, 2106 |
| FbaI | TGATCA | 1 cut(s) | 3484 |
| FblI | GTMKAC | 4 cut(s) | 1018, 2397, 2484, 3983 |
| Fnu4HI | GCNGC | 9 cut(s) | 981, 1609, 1698, 3698, 3738, 3741, 3858, 4077, 4187 |
| FokI | GGATG | 9 cut(s) | 449, 455, 989, 1643, 1724, 1843, 2067, 2422, 2897 |
| FriOI | GRGCYC | 4 cut(s) | 1587, 1752, 3026, 4097 |
| Fsp4HI | GCNGC | 9 cut(s) | 981, 1609, 1698, 3698, 3738, 3741, 3858, 4077, 4187 |
| GlaI | GCGC | 2 cut(s) | 2822, 4224 |
| GluI | GCNGC | 9 cut(s) | 981, 1609, 1698, 3698, 3738, 3741, 3858, 4077, 4187 |
| GsuI | CTGGAG | 2 cut(s) | 2159, 3659 |
| HapII | CCGG | 6 cut(s) | 27, 556, 2897, 3253, 3870, 4240 |
| HgaI | GACGC | 2 cut(s) | 81, 4275 |
| HhaI | GCGC | 2 cut(s) | 2823, 4225 |
| Hin1I | GRCGYC | 2 cut(s) | 73, 1767 |
| Hin6I | GCGC | 2 cut(s) | 2821, 4223 |
| HinP1I | GCGC | 2 cut(s) | 2821, 4223 |
| HincII | GTYRAC | 5 cut(s) | 1549, 2485, 2718, 2860, 3418 |
| HindII | GTYRAC | 5 cut(s) | 1549, 2485, 2718, 2860, 3418 |
| HindIII | AAGCTT | 4 cut(s) | 2302, 2640, 2695, 4214 |
| HpaII | CCGG | 6 cut(s) | 27, 556, 2897, 3253, 3870, 4240 |
| HphI | GGTGA | 7 cut(s) | 220, 782, 1458, 1880, 1981, 2659, 4243 |
| Hpy99I | CGWCG | 2 cut(s) | 546, 3587 |
| HpyCH4III | ACNGT | 7 cut(s) | 58, 1553, 2711, 3172, 3961, 3973, 3981 |
| HpyCH4IV | ACGT | 3 cut(s) | 541, 1084, 1767 |
| HpySE526I | ACGT | 3 cut(s) | 541, 1084, 1767 |
| Hsp92I | GRCGYC | 2 cut(s) | 73, 1767 |
| HspAI | GCGC | 2 cut(s) | 2821, 4223 |
| KpnI | GGTACC | 1 cut(s) | 27 |
| Ksp22I | TGATCA | 1 cut(s) | 3484 |
| LguI | GCTCTTC | 3 cut(s) | 529, 3912, 4194 |
| LmnI | GCTCC | 7 cut(s) | 49, 82, 844, 2140, 2965, 3727, 4100 |
| Lsp1109I | GCAGC | 9 cut(s) | 992, 1595, 1684, 3709, 3724, 3727, 3844, 4063, 4173 |
| MaeII | ACGT | 3 cut(s) | 541, 1084, 1767 |
| MfeI | CAATTG | 2 cut(s) | 1409, 1441 |
| MflI | RGATCY | 3 cut(s) | 784, 1150, 2149 |
| MhlI | GDGCHC | 5 cut(s) | 541, 1587, 1752, 3026, 4097 |
| MlsI | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| MluNI | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| MmeI | TCCRAC | 7 cut(s) | 16, 49, 131, 1206, 1670, 2756, 3779 |
| Mox20I | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| Mph1103I | ATGCAT | 4 cut(s) | 699, 1059, 2472, 3076 |
| MroXI | GAANNNNTTC | 3 cut(s) | 752, 2185, 3456 |
| MscI | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| MslI | CAYNNNNRTG | 4 cut(s) | 814, 1824, 1896, 3037 |
| Msp20I | TGGCCA | 3 cut(s) | 1147, 1338, 3521 |
| MspA1I | CMGCKG | 2 cut(s) | 2909, 3737 |
| MspCI | CTTAAG | 2 cut(s) | 848, 1004 |
| MspI | CCGG | 6 cut(s) | 27, 556, 2897, 3253, 3870, 4240 |
| MspR9I | CCNGG | 4 cut(s) | 2623, 2897, 3638, 4241 |
| MunI | CAATTG | 2 cut(s) | 1409, 1441 |
| Mva1269I | GAATGC | 1 cut(s) | 1726 |
| MvaI | CCWGG | 2 cut(s) | 2623, 3638 |
| NciI | CCSGG | 2 cut(s) | 2897, 4241 |
| NcoI | CCATGG | 2 cut(s) | 2010, 2064 |
| NdeI | CATATG | 2 cut(s) | 1107, 2106 |
| NheI | GCTAGC | 1 cut(s) | 3860 |
| NlaIV | GGNNCC | 7 cut(s) | 25, 171, 3023, 3024, 3729, 4096, 4138 |
| NmuCI | GTSAC | 6 cut(s) | 1251, 1973, 2631, 3541, 4115, 4376 |
| NsiI | ATGCAT | 4 cut(s) | 699, 1059, 2472, 3076 |
| NspI | RCATGY | 6 cut(s) | 224, 2119, 2618, 2821, 3062, 3458 |
| NspV | TTCGAA | 1 cut(s) | 890 |
| OliI | CACNNNNGTG | 1 cut(s) | 814 |
| PagI | TCATGA | 1 cut(s) | 1030 |
| PaqCI | CACCTGC | 1 cut(s) | 758 |
| PceI | AGGCCT | 1 cut(s) | 3664 |
| PciI | ACATGT | 2 cut(s) | 2115, 3454 |
| PciSI | GCTCTTC | 3 cut(s) | 529, 3912, 4194 |
| PctI | GAATGC | 1 cut(s) | 1726 |
| PdmI | GAANNNNTTC | 3 cut(s) | 752, 2185, 3456 |
| PfeI | GAWTC | 5 cut(s) | 1010, 1992, 2090, 4055, 4337 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 3637, 4072 |
| PkrI | GCNGC | 9 cut(s) | 982, 1610, 1699, 3699, 3739, 3742, 3859, 4078, 4188 |
| PscI | ACATGT | 2 cut(s) | 2115, 3454 |
| PshBI | ATTAAT | 1 cut(s) | 1929 |
| Psp124BI | GAGCTC | 2 cut(s) | 1587, 1752 |
| Psp6I | CCWGG | 2 cut(s) | 2621, 3636 |
| PspGI | CCWGG | 2 cut(s) | 2621, 3636 |
| PspN4I | GGNNCC | 7 cut(s) | 25, 171, 3023, 3024, 3729, 4096, 4138 |
| PspOMI | GGGCCC | 1 cut(s) | 3022 |
| PspPI | GGNCC | 4 cut(s) | 2680, 2888, 3022, 3023 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1885, 3637, 3740 |
| PsuI | RGATCY | 3 cut(s) | 784, 1150, 2149 |
| PvuII | CAGCTG | 2 cut(s) | 2909, 3737 |
| RsaI | GTAC | 9 cut(s) | 25, 243, 344, 1312, 1620, 1775, 2028, 2228, 3591 |
| RsaNI | GTAC | 9 cut(s) | 24, 242, 343, 1311, 1619, 1774, 2027, 2227, 3590 |
| RseI | CAYNNNNRTG | 4 cut(s) | 814, 1824, 1896, 3037 |
| SacI | GAGCTC | 2 cut(s) | 1587, 1752 |
| SalI | GTCGAC | 1 cut(s) | 2483 |
| SapI | GCTCTTC | 3 cut(s) | 529, 3912, 4194 |
| SatI | GCNGC | 9 cut(s) | 981, 1609, 1698, 3698, 3738, 3741, 3858, 4077, 4187 |
| Sau96I | GGNCC | 4 cut(s) | 2680, 2888, 3022, 3023 |
| ScrFI | CCNGG | 4 cut(s) | 2623, 2897, 3638, 4241 |
| SduI | GDGCHC | 5 cut(s) | 541, 1587, 1752, 3026, 4097 |
| SfcI | CTRYAG | 2 cut(s) | 3395, 3744 |
| SfuI | TTCGAA | 1 cut(s) | 890 |
| SinI | GGWCC | 1 cut(s) | 2888 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 814, 1824, 1896, 3037 |
| SmlI | CTYRAG | 9 cut(s) | 848, 995, 1004, 2176, 2915, 3467, 3820, 4217, 4365 |
| SmoI | CTYRAG | 9 cut(s) | 848, 995, 1004, 2176, 2915, 3467, 3820, 4217, 4365 |
| SpeI | ACTAGT | 1 cut(s) | 2854 |
| SseBI | AGGCCT | 1 cut(s) | 3664 |
| SsiI | CCGC | 3 cut(s) | 2490, 2995, 4411 |
| SstI | GAGCTC | 2 cut(s) | 1587, 1752 |
| StuI | AGGCCT | 1 cut(s) | 3664 |
| StyD4I | CCNGG | 4 cut(s) | 2621, 2895, 3636, 4239 |
| StyI | CCWWGG | 7 cut(s) | 1314, 2010, 2064, 2263, 3723, 4255, 4290 |
| TaaI | ACNGT | 7 cut(s) | 58, 1553, 2711, 3172, 3961, 3973, 3981 |
| TaiI | ACGT | 3 cut(s) | 544, 1087, 1770 |
| TatI | WGTACW | 3 cut(s) | 1618, 2026, 2226 |
| TfiI | GAWTC | 5 cut(s) | 1010, 1992, 2090, 4055, 4337 |
| TscAI | CASTG | 9 cut(s) | 1743, 2949, 3004, 3481, 3510, 3780, 3966, 3976, 4041 |
| TseFI | GTSAC | 6 cut(s) | 1251, 1973, 2631, 3541, 4115, 4376 |
| TseI | GCWGC | 9 cut(s) | 980, 1608, 1697, 3697, 3737, 3740, 3857, 4076, 4186 |
| Tsp45I | GTSAC | 6 cut(s) | 1251, 1973, 2631, 3541, 4115, 4376 |
| TspGWI | ACGGA | 1 cut(s) | 3464 |
| TspRI | CASTG | 9 cut(s) | 1743, 2949, 3004, 3481, 3510, 3780, 3966, 3976, 4041 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 3637, 4072 |
| Vha464I | CTTAAG | 2 cut(s) | 848, 1004 |
| VpaK11BI | GGWCC | 1 cut(s) | 2888 |
| VspI | ATTAAT | 1 cut(s) | 1929 |
| XapI | RAATTY | 8 cut(s) | 471, 748, 985, 1651, 2269, 2921, 3110, 3323 |
| XbaI | TCTAGA | 3 cut(s) | 2368, 2386, 3230 |
| XceI | RCATGY | 6 cut(s) | 224, 2119, 2618, 2821, 3062, 3458 |
| XmiI | GTMKAC | 4 cut(s) | 1018, 2397, 2484, 3983 |
| XmnI | GAANNNNTTC | 3 cut(s) | 752, 2185, 3456 |
| ZraI | GACGTC | 1 cut(s) | 1768 |
| Zsp2I | ATGCAT | 4 cut(s) | 699, 1059, 2472, 3076 |