RchiOBHm_Chr4g0397911

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000042
Physical Location & Seq
Reverse (-)
14342058 .. 14343331
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37013

Sequence Viewer

Length: 780 bp
ATGGAAGCAATGGTGTTTTGGAATGGTCCACTCACAGCAGTAGCGCAGTTGTTTAGCAAACTAAAGTTTCTTGATGTTACTTGTACAGAGTCCAAGTCTGTTGTTTTCCTTGACAAATTACTCGACCCAGAAGGAAACAGCAGTAGTAGTGCAGTTGGGATTGGGACCCAGCAGCAGCAGCAGCTCCCACATTTAAAAGAGTTGAGGCTTATTCGAATGGCGAAGCTGATGCATCTAGGCCAGGATGATGAGGAGGACAACTCACAATCATCCCCCCGCATCCCAAATTTTCCAAACCTGCAAATTCTATTAGTGAATGGTTGCCACAGCTTAAGGAATCTGAGATCATCCGCAATATCCTTCAACAATCTAACAAGCTTGCGAGTAAGTGTTTGCGATGGATTCAAATACTTGATAACTTACTCCATGGCCAAAAGTTTAATGCAACTCACAAAACTGGAAGTCGAGAATTGCCCAAGACTGGTGGAAATAGTGGGAAGCGATGGAGACGGCAATTCAAAAAATGAGATTACATTCAGGCGGCTGAAACATTTGAAACTATTGGGTCTACCAAGACTGCAAGGCTTTTGCTCGGGAAATTGCATTGCTAAATTCCCGTCCTTGGAAACTTCGACCATGAGCAACCGCCTCAAATTGAAGATTTTCCCAGCTCATGACCAAACGCTACAGCTAACCAACGAAGAGGAAGACACAGATCTTGATTTCTTGGAGGAGGAGCTGACTGCTGAGGATGAAATGAATTCGGCAAGTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

259

Amino Acids

28.96

Weight (kDa)

5.23

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 14 - 115 9.2e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 117 - 220 4.1e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 568
AciI CCGC 4 cut(s) 277, 351, 541, 646
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 4 cut(s) 286, 303, 611, 760
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 481, 622
AflII CTTAAG 1 cut(s) 331
AgsI TTSAA 5 cut(s) 364, 406, 519, 556, 658
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 7 cut(s) 184, 226, 330, 378, 671, 691, 739
AluI AGCT 7 cut(s) 184, 226, 330, 378, 671, 691, 739
Alw26I GTCTC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 2 cut(s) 238, 429
ApeKI GCWGC 4 cut(s) 172, 175, 178, 181
ApoI RAATTY 4 cut(s) 286, 303, 611, 760
Asp700I GAANNNNTTC 1 cut(s) 662
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 26, 165
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 592
AvaII GGWCC 2 cut(s) 26, 165
BalI TGGCCA 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 714
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 4 cut(s) 184, 187, 190, 193
BccI CCATC 2 cut(s) 392, 497
BceAI ACGGC 1 cut(s) 526
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 686
BfrI CTTAAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 715
BisI GCNGC 5 cut(s) 173, 176, 179, 182, 542
BlsI GCNGC 5 cut(s) 174, 177, 180, 183, 543
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 2 cut(s) 26, 165
BmeT110I CYCGRG 1 cut(s) 592
BmgT120I GGNCC 2 cut(s) 26, 165
BmiI GGNNCC 2 cut(s) 166, 167
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 219, 241, 288
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 747
Bpu14I TTCGAA 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 426, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 622
Bse1I ACTGG 2 cut(s) 462, 486
Bse3DI GCAATG 2 cut(s) 15, 603
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 426, 621
BseGI GGATG 5 cut(s) 250, 269, 279, 347, 757
BseLI CCNNNNNNNGG 2 cut(s) 481, 622
BseMI GCAATG 2 cut(s) 15, 603
BseMII CTCAG 2 cut(s) 332, 738
BseNI ACTGG 2 cut(s) 462, 486
BseRI GAGGAG 3 cut(s) 266, 746, 749
BseXI GCAGC 4 cut(s) 184, 187, 190, 193
BseYI CCCAGC 2 cut(s) 168, 667
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 2 cut(s) 240, 431
BsiHKCI CYCGRG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 481, 622
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 2 cut(s) 240, 431
BsoBI CYCGRG 1 cut(s) 592
Bsp119I TTCGAA 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 2 cut(s) 344, 715
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 4 cut(s) 277, 351, 541, 646
BspANI GGCC 2 cut(s) 240, 431
BspCNI CTCAG 2 cut(s) 333, 739
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 2 cut(s) 166, 167
BspMI ACCTGC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 15, 603
BsrGI TGTACA 1 cut(s) 83
BsrI ACTGG 2 cut(s) 462, 486
BssECI CCNNGG 2 cut(s) 426, 621
BssMI GATC 2 cut(s) 344, 715
BssT1I CCWWGG 2 cut(s) 426, 621
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 696
BstAFI CTTAAG 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 341, 747
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 5 cut(s) 250, 269, 279, 347, 757
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 347, 718
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 344, 715
BstMWI GCNNNNNNNGC 2 cut(s) 178, 181
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 686
BstV1I GCAGC 4 cut(s) 184, 187, 190, 193
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuRI GGCC 2 cut(s) 240, 431
BtgI CCRYGG 1 cut(s) 426
BtgZI GCGATG 2 cut(s) 411, 516
BtsCI GGATG 5 cut(s) 250, 269, 279, 347, 757
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 380
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 26, 165
Csp6I GTAC 1 cut(s) 84
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 3 cut(s) 427, 637, 674
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 2 cut(s) 341, 747
DpnI GATC 2 cut(s) 346, 717
DpnII GATC 2 cut(s) 344, 715
DraI TTTAAA 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 426, 621
Eco47I GGWCC 2 cut(s) 26, 165
Eco88I CYCGRG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 2 cut(s) 426, 621
EcoT22I ATGCAT 1 cut(s) 234
ErhI CCWWGG 2 cut(s) 426, 621
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 3 cut(s) 430, 640, 677
FaiI YATR 3 cut(s) 428, 638, 675
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 426, 636, 673
FauI CCCGC 1 cut(s) 284
FblI GTMKAC 1 cut(s) 568
Fnu4HI GCNGC 5 cut(s) 173, 176, 179, 182, 542
FokI GGATG 5 cut(s) 256, 257, 266, 334, 764
Fsp4HI GCNGC 5 cut(s) 173, 176, 179, 182, 542
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 45
GluI GCNGC 5 cut(s) 173, 176, 179, 182, 542
GsaI CCCAGC 2 cut(s) 172, 671
HaeIII GGCC 2 cut(s) 240, 431
HhaI GCGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 430, 640, 677
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 3 cut(s) 89, 337, 402
Hpy166II GTNNAC 2 cut(s) 29, 569
Hpy188I TCNGA 2 cut(s) 342, 775
Hpy188III TCNNGA 5 cut(s) 71, 466, 594, 674, 719
Hpy8I GTNNAC 2 cut(s) 29, 569
HpyAV CCTTC 2 cut(s) 125, 370
HpyCH4V TGCA 6 cut(s) 152, 232, 301, 445, 580, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 181
HpyF3I CTNAG 2 cut(s) 341, 747
Hsp92II CATG 3 cut(s) 430, 640, 677
HspAI GCGC 1 cut(s) 44
KflI GGGWCCC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 344, 715
LmnI GCTCC 2 cut(s) 189, 736
LpnPI CCDG 9 cut(s) 141, 182, 227, 254, 311, 443, 467, 523, 681
Lsp1109I GCAGC 4 cut(s) 184, 187, 190, 193
LweI GCATC 3 cut(s) 219, 241, 288
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 346, 717
MboI GATC 2 cut(s) 344, 715
MboII GAAGA 3 cut(s) 670, 713, 719
MflI RGATCY 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 9 cut(s) 116, 286, 303, 469, 514, 598, 611, 653, 760
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 8 cut(s) 198, 244, 247, 659, 697, 724, 727, 742
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 234
MroXI GAANNNNTTC 1 cut(s) 662
MscI TGGCCA 1 cut(s) 431
MseI TTAA 3 cut(s) 194, 332, 440
Msp20I TGGCCA 1 cut(s) 431
MspCI CTTAAG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 178, 181
NcoI CCATGG 1 cut(s) 426
NdeII GATC 2 cut(s) 344, 715
NlaIII CATG 3 cut(s) 430, 640, 677
NlaIV GGNNCC 2 cut(s) 166, 167
NsiI ATGCAT 1 cut(s) 234
NspV TTCGAA 1 cut(s) 214
PagI TCATGA 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 2 cut(s) 337, 402
PkrI GCNGC 5 cut(s) 174, 177, 180, 183, 543
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 2 cut(s) 168, 667
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 166, 167
PspPI GGNCC 2 cut(s) 26, 165
PspPPI RGGWCCY 1 cut(s) 165
PsuI RGATCY 1 cut(s) 715
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 194, 332, 440
SatI GCNGC 5 cut(s) 173, 176, 179, 182, 542
Sau3AI GATC 2 cut(s) 344, 715
Sau96I GGNCC 2 cut(s) 26, 165
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 242
SetI ASST 8 cut(s) 186, 228, 300, 332, 380, 673, 693, 741
SfaNI GCATC 3 cut(s) 219, 241, 288
SfcI CTRYAG 1 cut(s) 686
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 2 cut(s) 26, 165
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 9 cut(s) 116, 286, 303, 469, 514, 598, 611, 653, 760
SsiI CCGC 4 cut(s) 277, 351, 541, 646
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 2 cut(s) 426, 621
TaqI TCGA 4 cut(s) 123, 214, 465, 632
TasI AATT 9 cut(s) 116, 286, 303, 469, 514, 598, 611, 653, 760
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 2 cut(s) 337, 402
Tru1I TTAA 3 cut(s) 194, 332, 440
Tru9I TTAA 3 cut(s) 194, 332, 440
TseI GCWGC 4 cut(s) 172, 175, 178, 181
TspDTI ATGAA 2 cut(s) 768, 773
Vha464I CTTAAG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 26, 165
XapI RAATTY 4 cut(s) 286, 303, 611, 760
XmiI GTMKAC 1 cut(s) 568
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.