Rroxscaffold_5G00342820

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000042
Physical Location & Seq
Reverse (-)
11937607 .. 11981081
43475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342820.1

Sequence Viewer

Length: 3870 bp
ATGGAGTTTCTTCTTGCAATTGGCACTGGAATTGTTGGAAAGATTGCCGAGTACACAGTTGAACCAGTTATACGCCAGGTGGGATATGTAATCTGCTACAGTAGGAACCTCAAGAAACTACAGAGTCAAGTAGATGACTTGAGTGGTGCTAAACTAAGGGTTCAACATGATGTGGAAAAAGAAAAAAGAAAAGGGAAAAAGATTGAAACAGATGTGCACAACTGGCTGACTAAAGTGGAAGAGATCACGAGAGAAGCAAATGATTTTTTGAAAGCTGAACACCATGCAAAGATCAAGTGTCTCCATGGCTTTTGTCCTAATCTAAAGCTTCGCCATCAGCTAAGCAGGAAGTCTACAAAATTGGTTCAAGAGGTTGTTGAACTCTTTGGCAAAAAAGATTTTGGTAATATTGCATACGATGTTTTCCCAGAAGAGGTATGTGTAATATCTACCAAAGACTACGAGGCCTTTGATTCAAGGACTTTAGTTGTGAAGCAGATTATGGATGAACTGAGAAACTCTGATACTGACATGATTGGGGTGTATGGTATTGGGGGTGTGGGTAAGACAACACTCGTCAAAGAAGTTTATAGGCAAGCTATAAAAGACAAGTTGTTGTTTGATGATGTGGTGATAATAGTTGATGTAAAACAAATTTCAAACTTGGAAGGAATTCAAACGAAAATTGTTGACAAGTTAGGTATGGACACTGTTGGAGATGAGAGTATGGATAGAAGAGCACGTCGCCTATGCGATAGGCTAAAAGACAAAAAGGCTCTTATAATTTTGGATGATGTTGTTGAAAGAATTGATTTGGAGGTACTGGGACTTCCTCGTTTGGCGACTTGCAAAATATTGTTGACATCTAGAAGCAGACAAGTATTATCCGCTGACATGCATACACAAAAAGAGTTTCAGCTCCATGTATTAGACGAGAAAGAAACTTGGAATTTATTTGCCAAGATGGCCGGTAATGTAGTCAAGAATCCCAATATACGAACAGTAGCCACTAAAGTAGCTGAAAAATGTGGGGGATTGCCAGTTTTGGTTGTCACTGTTGCAAGTGCTTTAAAGAAGAGTACACTGAATGCATGGAAAGATGCTTTGAGAAGACTACAGAAGTTTGACAAAGAAGGATTTACTGAAAAAGCATACTTGTCCCTGGAGTGGAGTTACAATCAATTAGATGAGGCGGAGCTTAAGTCATTATTCTTGCTATGTGGACTTCTATTAGGATACTCGAAGAGTGCTTCGTTTATTGACTTGTTAAAGTACGGCATGGGTTTGGGTTTGTTCAAAAGTGTTGAAACAATGGAAGAAGCAAGAAATGCACTGCATTCACTGCTTGAAAAACTAAAAGATTCTTGCTTATTGGTAGACAGTGATGATATCACACATACCAGAATGCACGATCTTGTACGAGATGTTGCTAACCGGATTGCATCAAGAGATCAACATGTCATATCATTAGCACACGGAAATGAGTTGAAAGATTGGCCAAATAAGGAGTTTCTTAAAAAATGCACAGCAATCTTTTCCCCTTACCGCAATATCCCCAAACTTCCCGAAGTTTTGAAATGCCCAGAGTTGAAGATATTTTGTTTGTGGGGTGATGATCATGACACACTAGAAATTCCACACAACTTTTTTCAAGATATGGAAAATCTCAGGGTGTTGGATCTAACCGAGTTGTGTATATGGCCATCACTACCTCCATCTCTTCAGTTCCTAAGGAATCTTAAGACACTATGTTTCTATAATTGCATACTGGAAGAAATAGCTCAAGTCGGACAACTGGGAAACTTAGAATTTCTTACTTTTAAGGGATCCAATATCAAGTTGTTGCCCAAAGAAATAGGACAATTGACTCGTCTACGATCACTGGATTTGACTGATTGCTCCAAACTAGAAGTGATATCACCTGATGTTATATCAAGTTTGAAAAGACTAGAAGAATTGAGAATAGGGGAAAATAGTTTTAACCAATGGGAGTATGGAGTCATGAGTATAGAAAGAAGTAATGCAAGCCTTCAAGAGCTAAAGCACTTGTCTCAGTTAACCGCATTACAACTACATATACCACATGCTAGCATTCTTCCAGCAGATTTGTTCACCAATAAGTTAGAAAGATTCCAGATATGTATTGGTTCTGTATGGAATTGGGGTAATGTGGATGAAACCCTCAACGCACTAAAGCTCCACCTCACTATCGGCAATGAATTAGACCATGGTCTAGAAATGTTGCTGAAAAGAACTGAAGACTTGTACTTGGAGGGGACGGAGATTTTTAATAGCAATATTGTCCATCATCAATTAGGTACTGAAGGTTTTCAGCAACTGAAACATCTCCACATTCAAAACAGTGCTGGACTTGCATACATCATTAATGGGAATGCCGAGTTTACGTATATCATAAATGGGAAGGTTAGGTATCCCAACTTAACGTGGTTGGCAGTGAATGAACTCAATTGTTTAACATTCTTGTTATCATCTTTAATGGCTAGAAGCCTTGCACAACTCAAACGTCTTCAGGTATCGGGATGTCAAATAATGGAAAAGATAGTATCAATAGAAGAATCTGATGAAGAAATTGTAGACAACTTCCTTTGCCAGCTACAAATTCTGGAGCTAAAAGACCTTCCAAATCTCACTAAATTCTGCTCAAGAAACCATACTTCGGAGACGTTCATTTTTGATTCTACGGGTAAAGGTAATACAATTGGCAAGGATATCAAAGACACCGACTCAAGCGAAAACCACGAGCCCGAAGTAGTGCAACCTTTTCTTTTTGACAATAAGGTGGAATTTCCGAGGTTGAAGAGTTTGTTTCTCAAGGATCTAACAAAGTTGACCACAATATGGCACGGCCAACTTTTTCTAAACTCTTTTAGAAATCTCAAGTCGGTAGAAATTATTTCTTGTGAGAGTCTAAGAAACATTTTCCCAGCTTCGGTTGCTAGAAATCTTCAACAGTTGGAGAGGCTGATACTGAGTGGCTGTGGAGTGGAGGAAATCATTGCATACGAAGGGAAACCACAAACAACACCGAAGTTTGTTTTTTCAAAAGTCACATTTGTGTATTTTGGAGGACTGTCCCAACTTAGGAGTTTCTATCCAGCCATGCATGTTTCTAGTTGGCCAGCACTTCGAGGGTTGTTTGTTGGTCGATGTCACAAATTGGAGATTTTCTCTGGGGCACTTTCAAACTATGAATCAAATCCGTCCACTCCAAATAAACAAACTCTCTTTTCAATTGAGAAGGATTCATTCCCCAACTTGGAAGACTTGTATTTATGCAGCATGGAGATTTGGAATGGTCCAGTTCCAGTCCACTTCTTTAGAAAGCTAAAATCTCTTGAGGTTTGTTGTCCACAGTCCAAGTCAGTTGTTTTCCTTGACAAATTACTCGATGAAGGAAGCTCTAGTACTAGGCAAAGAGAGGACGCAGAAAGCTTACAGAATCTAACCTCATCGGCAATATCCTTCAAGAATCTGACAACTTTGGAAGTACATTTTTGCAAGGGATTGAGATACTTGCTAACTTACTCCGTGGCCAGAGGTTTAAAACATCTCACAAAACTGGAAGTTGAGGATTGTAAGAGACTTGTTAGTATCGTGGGAAGCACCGAAGAAGACGATTCTGGGAATAATGATGAGATTACATTCAGGAGATTGAAACATTTGAGACTTTCTTGTCTACCAAGACTGCAAGGCTTTTGCTCGGGAAATTGCATTGCTAAATTCCCGTCCTTGGAAACTTTAACCATGAGCAACCGCCTCAAATTGAAGATTTTCCCAGCTCATGACCAAACGCCACAGCTAACAAACGAAGAGAACGACACAGATGTGGACTACTGCGGTAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1289

Amino Acids

146.57

Weight (kDa)

6.42

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 164 - 324 4.3e-30 NB-ARC domain
AAA_22 PF13401 177 - 266 5.9e-06 AAA domain
LRR_14 PF23598 518 - 788 7.4e-15 Leucine-rich repeat region
LRR_RPS2 PF23247 811 - 892 2e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 934 - 1001 2.5e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1154 - 1267 3.7e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AasI GACNNNNNNGTC 1 cut(s) 3693
AccB7I CCANNNNNTGG 1 cut(s) 2859
AccI GTMKAC 5 cut(s) 353, 1377, 1873, 2595, 3697
AciI CCGC 6 cut(s) 888, 1193, 1546, 2061, 3775, 3858
AclWI GGATC 4 cut(s) 1686, 1821, 1834, 2844
AcoI YGGCCR 6 cut(s) 966, 1496, 1700, 2866, 3137, 3552
AcsI RAATTY 9 cut(s) 654, 672, 949, 1632, 1808, 2619, 2654, 2804, 3740
AcuI CTGAAG 4 cut(s) 1706, 2277, 2343, 2513
AfaI GTAC 9 cut(s) 53, 822, 1081, 1274, 1419, 2267, 2320, 3427, 3510
AfiI CCNNNNNNNGG 8 cut(s) 433, 1167, 2677, 2859, 2950, 3102, 3277, 3751
AflII CTTAAG 2 cut(s) 1199, 1739
AflIII ACRYGT 1 cut(s) 1456
AjiI CACGTC 1 cut(s) 743
AjnI CCWGG 2 cut(s) 75, 1161
AleI CACNNNNGTG 2 cut(s) 3074, 3845
Alw21I GWGCWC 2 cut(s) 219, 742
Alw26I GTCTC 5 cut(s) 305, 2055, 2675, 3595, 3679
Alw44I GTGCAC 1 cut(s) 215
AlwI GGATC 4 cut(s) 1686, 1821, 1834, 2844
AlwNI CAGNNNCTG 1 cut(s) 2338
Ama87I CYCGRG 1 cut(s) 3721
AoxI GGCC 7 cut(s) 465, 966, 1496, 1700, 2866, 3137, 3552
ApaLI GTGCAC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 3297
ApoI RAATTY 9 cut(s) 654, 672, 949, 1632, 1808, 2619, 2654, 2804, 3740
AseI ATTAAT 1 cut(s) 2385
Asp700I GAANNNNTTC 3 cut(s) 672, 2328, 3791
AspS9I GGNCC 1 cut(s) 3317
AsuHPI GGTGA 4 cut(s) 643, 1622, 1911, 2104
AsuNHI GCTAGC 1 cut(s) 2087
AvaI CYCGRG 1 cut(s) 3721
AvaII GGWCC 1 cut(s) 3317
AxyI CCTNAGG 1 cut(s) 1730
BaeGI GKGCMC 2 cut(s) 219, 3199
BalI TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
BamHI GGATCC 1 cut(s) 1826
BanII GRGCYC 1 cut(s) 2766
BarI GAAGNNNNNNTAC 4 cut(s) 813, 845, 3409, 3441
BauI CACGAG 2 cut(s) 247, 2759
BbsI GAAGAC 5 cut(s) 1117, 2265, 2519, 3288, 3639
Bbv12I GWGCWC 2 cut(s) 219, 742
BbvI GCAGC 1 cut(s) 3309
BccI CCATC 5 cut(s) 342, 958, 1711, 1723, 2313
BceAI ACGGC 2 cut(s) 1291, 2881
BciT130I CCWGG 2 cut(s) 77, 1163
BciVI GTATCC 2 cut(s) 1229, 2442
BclI TGATCA 1 cut(s) 1615
BcoDI GTCTC 5 cut(s) 305, 2055, 2675, 3595, 3679
BfmI CTRYAG 3 cut(s) 97, 119, 1115
BfrI CTTAAG 2 cut(s) 1199, 1739
BfuI GTATCC 2 cut(s) 1229, 2442
BglI GCCNNNNNGGC 1 cut(s) 965
BisI GCNGC 1 cut(s) 3298
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 3299
BmcAI AGTACT 1 cut(s) 3427
Bme1390I CCNGG 2 cut(s) 77, 1163
Bme18I GGWCC 1 cut(s) 3317
BmeT110I CYCGRG 1 cut(s) 3721
BmgBI CACGTC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 3317
BmiI GGNNCC 2 cut(s) 107, 1828
BmrFI CCNGG 2 cut(s) 77, 1163
BmrI ACTGGG 2 cut(s) 833, 1805
BmsI GCATC 2 cut(s) 1090, 1451
BmtI GCTAGC 1 cut(s) 2091
BmuI ACTGGG 2 cut(s) 833, 1805
BoxI GACNNNNGTC 1 cut(s) 2229
BpiI GAAGAC 5 cut(s) 1117, 2265, 2519, 3288, 3639
BplI GAGNNNNNCTC 2 cut(s) 3173, 3205
BpmI CTGGAG 2 cut(s) 1184, 2645
Bpu1102I GCTNAGC 1 cut(s) 341
BpuEI CTTGAG 8 cut(s) 95, 160, 1767, 2647, 2731, 2816, 2882, 3377
BsaAI YACGTR 1 cut(s) 2406
BsaJI CCNNGG 6 cut(s) 304, 1161, 2227, 2810, 3549, 3750
BsaWI WCCGGW 1 cut(s) 1434
BsaXI ACNNNNNCTCC 4 cut(s) 1187, 1217, 2181, 2211
Bsc4I CCNNNNNNNGG 8 cut(s) 433, 1167, 2677, 2859, 2950, 3102, 3277, 3751
Bse118I RCCGGY 1 cut(s) 968
Bse21I CCTNAGG 1 cut(s) 1730
Bse3DI GCAATG 3 cut(s) 2221, 3015, 3732
BseBI CCWGG 2 cut(s) 77, 1163
BseDI CCNNGG 6 cut(s) 304, 1161, 2227, 2810, 3549, 3750
BseGI GGATG 4 cut(s) 511, 796, 2179, 2546
BseLI CCNNNNNNNGG 8 cut(s) 433, 1167, 2677, 2859, 2950, 3102, 3277, 3751
BseMI GCAATG 3 cut(s) 2221, 3015, 3732
BseMII CTCAG 4 cut(s) 503, 1681, 2066, 2981
BseSI GKGCMC 2 cut(s) 219, 3199
BseXI GCAGC 1 cut(s) 3309
BseYI CCCAGC 2 cut(s) 2944, 3796
BshFI GGCC 7 cut(s) 467, 968, 1498, 1702, 2868, 3139, 3554
BsiHKAI GWGCWC 2 cut(s) 219, 742
BsiHKCI CYCGRG 1 cut(s) 3721
BsiSI CCGG 2 cut(s) 969, 1435
BslFI GGGAC 4 cut(s) 840, 1144, 2290, 3079
BslI CCNNNNNNNGG 8 cut(s) 433, 1167, 2677, 2859, 2950, 3102, 3277, 3751
BsmAI GTCTC 5 cut(s) 305, 2055, 2675, 3595, 3679
BsmBI CGTCTC 1 cut(s) 2675
BsmFI GGGAC 4 cut(s) 840, 1144, 2290, 3079
BsmI GAATGC 5 cut(s) 1093, 1336, 1410, 2091, 2398
BsnI GGCC 7 cut(s) 467, 968, 1498, 1702, 2868, 3139, 3554
BsoBI CYCGRG 1 cut(s) 3721
Bsp1286I GDGCHC 4 cut(s) 219, 742, 2766, 3199
Bsp143I GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
Bsp1720I GCTNAGC 1 cut(s) 341
Bsp19I CCATGG 2 cut(s) 304, 2227
BspACI CCGC 6 cut(s) 888, 1193, 1546, 2061, 3775, 3858
BspANI GGCC 7 cut(s) 467, 968, 1498, 1702, 2868, 3139, 3554
BspCNI CTCAG 4 cut(s) 504, 1680, 2065, 2982
BspHI TCATGA 3 cut(s) 1618, 2001, 3802
BspLI GGNNCC 2 cut(s) 107, 1828
BspOI GCTAGC 1 cut(s) 2091
BspPI GGATC 4 cut(s) 1686, 1821, 1834, 2844
BspQI GCTCTTC 1 cut(s) 730
BspTI CTTAAG 2 cut(s) 1199, 1739
BsrDI GCAATG 3 cut(s) 2221, 3015, 3732
BsrFI RCCGGY 1 cut(s) 968
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 6 cut(s) 304, 1161, 2227, 2810, 3549, 3750
BssMI GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
BssSI CACGAG 2 cut(s) 247, 2759
BssT1I CCWWGG 3 cut(s) 304, 2227, 3750
Bst2BI CACGAG 2 cut(s) 247, 2759
Bst2UI CCWGG 2 cut(s) 77, 1163
Bst6I CTCTTC 8 cut(s) 234, 426, 730, 1070, 1238, 1725, 2813, 3825
BstAFI CTTAAG 2 cut(s) 1199, 1739
BstAPI GCANNNNNTGC 2 cut(s) 1328, 1342
BstBAI YACGTR 1 cut(s) 2406
BstC8I GCNNGC 5 cut(s) 597, 2026, 2089, 2612, 3141
BstDSI CCRYGG 3 cut(s) 304, 2227, 3549
BstF5I GGATG 4 cut(s) 511, 796, 2179, 2546
BstKTI GATC 9 cut(s) 246, 294, 1414, 1453, 1618, 1681, 1829, 1880, 2839
BstMAI GTCTC 5 cut(s) 305, 2055, 2675, 3595, 3679
BstMBI GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
BstMWI GCNNNNNNNGC 6 cut(s) 223, 965, 1328, 1342, 2372, 2954
BstNI CCWGG 2 cut(s) 77, 1163
BstNSI RCATGY 4 cut(s) 898, 1460, 2087, 3128
BstPAI GACNNNNGTC 1 cut(s) 2229
BstSCI CCNGG 2 cut(s) 75, 1161
BstSFI CTRYAG 3 cut(s) 97, 119, 1115
BstSLI GKGCMC 2 cut(s) 219, 3199
BstSNI TACGTA 1 cut(s) 2406
BstV1I GCAGC 1 cut(s) 3309
BstV2I GAAGAC 5 cut(s) 1117, 2265, 2519, 3288, 3639
BstX2I RGATCY 3 cut(s) 1678, 1826, 2836
BstYI RGATCY 3 cut(s) 1678, 1826, 2836
Bsu36I CCTNAGG 1 cut(s) 1730
BsuI GTATCC 2 cut(s) 1229, 2442
BsuRI GGCC 7 cut(s) 467, 968, 1498, 1702, 2868, 3139, 3554
BtgI CCRYGG 3 cut(s) 304, 2227, 3549
BtrI CACGTC 1 cut(s) 743
BtsCI GGATG 4 cut(s) 511, 796, 2179, 2546
BtsI GCAGTG 3 cut(s) 1331, 1340, 2460
Cac8I GCNNGC 5 cut(s) 597, 2026, 2089, 2612, 3141
CaiI CAGNNNCTG 1 cut(s) 2338
CciI TCATGA 3 cut(s) 1618, 2001, 3802
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 1 cut(s) 3317
CseI GACGC 1 cut(s) 3452
Csp6I GTAC 9 cut(s) 52, 821, 1080, 1273, 1418, 2266, 2319, 3426, 3509
CviQI GTAC 9 cut(s) 52, 821, 1080, 1273, 1418, 2266, 2319, 3426, 3509
DpnI GATC 9 cut(s) 245, 293, 1413, 1452, 1617, 1680, 1828, 1879, 2838
DpnII GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
DraI TTTAAA 2 cut(s) 1071, 3564
DrdI GACNNNNNNGTC 1 cut(s) 3693
DseDI GACNNNNNNGTC 1 cut(s) 3693
EaeI YGGCCR 6 cut(s) 966, 1496, 1700, 2866, 3137, 3552
Eam1104I CTCTTC 8 cut(s) 234, 426, 730, 1070, 1238, 1725, 2813, 3825
EarI CTCTTC 8 cut(s) 234, 426, 730, 1070, 1238, 1725, 2813, 3825
EciI GGCGGA 1 cut(s) 1208
Eco105I TACGTA 1 cut(s) 2406
Eco130I CCWWGG 3 cut(s) 304, 2227, 3750
Eco147I AGGCCT 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 2766
Eco32I GATATC 3 cut(s) 1390, 1917, 2731
Eco47I GGWCC 1 cut(s) 3317
Eco57I CTGAAG 4 cut(s) 1706, 2277, 2343, 2513
Eco81I CCTNAGG 1 cut(s) 1730
Eco88I CYCGRG 1 cut(s) 3721
EcoRI GAATTC 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 75, 1161
EcoRV GATATC 3 cut(s) 1390, 1917, 2731
EcoT14I CCWWGG 3 cut(s) 304, 2227, 3750
EcoT22I ATGCAT 3 cut(s) 900, 1093, 3126
EcoT38I GRGCYC 1 cut(s) 2766
ErhI CCWWGG 3 cut(s) 304, 2227, 3750
Esp3I CGTCTC 1 cut(s) 2675
FaqI GGGAC 4 cut(s) 840, 1144, 2290, 3079
FbaI TGATCA 1 cut(s) 1615
FblI GTMKAC 5 cut(s) 353, 1377, 1873, 2595, 3697
Fnu4HI GCNGC 1 cut(s) 3298
FokI GGATG 4 cut(s) 518, 803, 2186, 2553
FriOI GRGCYC 1 cut(s) 2766
Fsp4HI GCNGC 1 cut(s) 3298
GluI GCNGC 1 cut(s) 3298
GsaI CCCAGC 2 cut(s) 2948, 3800
GsuI CTGGAG 2 cut(s) 1184, 2645
HaeIII GGCC 7 cut(s) 467, 968, 1498, 1702, 2868, 3139, 3554
HapII CCGG 2 cut(s) 969, 1435
HgaI GACGC 1 cut(s) 3452
HincII GTYRAC 4 cut(s) 691, 861, 2058, 2850
HindII GTYRAC 4 cut(s) 691, 861, 2058, 2850
HindIII AAGCTT 2 cut(s) 326, 3451
HpaI GTTAAC 1 cut(s) 2058
HpaII CCGG 2 cut(s) 969, 1435
HphI GGTGA 4 cut(s) 643, 1622, 1911, 2104
Hpy188I TCNGA 6 cut(s) 523, 1790, 2581, 2680, 2811, 3495
Hpy99I CGWCG 1 cut(s) 747
HpyCH4IV ACGT 5 cut(s) 742, 2405, 2444, 2524, 2684
HpyF10VI GCNNNNNNNGC 6 cut(s) 223, 965, 1328, 1342, 2372, 2954
HpySE526I ACGT 5 cut(s) 742, 2405, 2444, 2524, 2684
Ksp22I TGATCA 1 cut(s) 1615
KspAI GTTAAC 1 cut(s) 2058
Kzo9I GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
LguI GCTCTTC 1 cut(s) 730
LmnI GCTCC 5 cut(s) 924, 1195, 1904, 2202, 2626
Lsp1109I GCAGC 1 cut(s) 3309
LweI GCATC 2 cut(s) 1090, 1451
MaeII ACGT 5 cut(s) 742, 2405, 2444, 2524, 2684
MaeIII GTNAC 4 cut(s) 1051, 1172, 3067, 3170
MalI GATC 9 cut(s) 245, 293, 1413, 1452, 1617, 1680, 1828, 1879, 2838
MboI GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
MfeI CAATTG 5 cut(s) 18, 1862, 2467, 2718, 3252
MflI RGATCY 3 cut(s) 1678, 1826, 2836
MhlI GDGCHC 4 cut(s) 219, 742, 2766, 3199
MlsI TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
MluNI TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
MlyI GAGTC 5 cut(s) 133, 1861, 2007, 2738, 2935
MmeI TCCRAC 5 cut(s) 16, 694, 1656, 1768, 2955
Mox20I TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
Mph1103I ATGCAT 3 cut(s) 900, 1093, 3126
MroXI GAANNNNTTC 3 cut(s) 672, 2328, 3791
MscI TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
MslI CAYNNNNRTG 3 cut(s) 1479, 3074, 3845
Msp20I TGGCCA 4 cut(s) 1498, 1702, 3139, 3554
MspA1I CMGCKG 1 cut(s) 890
MspCI CTTAAG 2 cut(s) 1199, 1739
MspI CCGG 2 cut(s) 969, 1435
MspR9I CCNGG 2 cut(s) 77, 1163
MunI CAATTG 5 cut(s) 18, 1862, 2467, 2718, 3252
Mva1269I GAATGC 5 cut(s) 1093, 1336, 1410, 2091, 2398
MvaI CCWGG 2 cut(s) 77, 1163
MwoI GCNNNNNNNGC 6 cut(s) 223, 965, 1328, 1342, 2372, 2954
NcoI CCATGG 2 cut(s) 304, 2227
NdeII GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
NheI GCTAGC 1 cut(s) 2087
NlaIV GGNNCC 2 cut(s) 107, 1828
NmeAIII GCCGAG 2 cut(s) 73, 2422
NmuCI GTSAC 3 cut(s) 1051, 3067, 3170
NsiI ATGCAT 3 cut(s) 900, 1093, 3126
NspI RCATGY 4 cut(s) 898, 1460, 2087, 3128
OliI CACNNNNGTG 2 cut(s) 3074, 3845
PagI TCATGA 3 cut(s) 1618, 2001, 3802
PceI AGGCCT 1 cut(s) 467
PciI ACATGT 1 cut(s) 1456
PciSI GCTCTTC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 3834
PctI GAATGC 5 cut(s) 1093, 1336, 1410, 2091, 2398
PdmI GAANNNNTTC 3 cut(s) 672, 2328, 3791
PflMI CCANNNNNTGG 1 cut(s) 2859
PkrI GCNGC 1 cut(s) 3299
PleI GAGTC 5 cut(s) 132, 1861, 2006, 2738, 2934
PpsI GAGTC 5 cut(s) 132, 1861, 2006, 2738, 2934
Ppu21I YACGTR 1 cut(s) 2406
PscI ACATGT 1 cut(s) 1456
PshAI GACNNNNGTC 1 cut(s) 2229
PshBI ATTAAT 1 cut(s) 2385
PsiI TTATAA 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 75, 1161
PspFI CCCAGC 2 cut(s) 2944, 3796
PspGI CCWGG 2 cut(s) 75, 1161
PspN4I GGNNCC 2 cut(s) 107, 1828
PspPI GGNCC 1 cut(s) 3317
PsrI GAACNNNNNNTAC 2 cut(s) 54, 86
PstNI CAGNNNCTG 1 cut(s) 2338
PsuI RGATCY 3 cut(s) 1678, 1826, 2836
RsaI GTAC 9 cut(s) 53, 822, 1081, 1274, 1419, 2267, 2320, 3427, 3510
RsaNI GTAC 9 cut(s) 52, 821, 1080, 1273, 1418, 2266, 2319, 3426, 3509
RseI CAYNNNNRTG 3 cut(s) 1479, 3074, 3845
SapI GCTCTTC 1 cut(s) 730
SatI GCNGC 1 cut(s) 3298
Sau3AI GATC 9 cut(s) 243, 291, 1411, 1450, 1615, 1678, 1826, 1877, 2836
Sau96I GGNCC 1 cut(s) 3317
ScaI AGTACT 1 cut(s) 3427
SchI GAGTC 5 cut(s) 133, 1861, 2007, 2738, 2935
ScrFI CCNGG 2 cut(s) 77, 1163
SduI GDGCHC 4 cut(s) 219, 742, 2766, 3199
SfaNI GCATC 2 cut(s) 1090, 1451
SfcI CTRYAG 3 cut(s) 97, 119, 1115
SinI GGWCC 1 cut(s) 3317
SmiMI CAYNNNNRTG 3 cut(s) 1479, 3074, 3845
SnaBI TACGTA 1 cut(s) 2406
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 6 cut(s) 888, 1193, 1546, 2061, 3775, 3858
SspI AATATT 3 cut(s) 409, 855, 2299
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 75, 1161
StyI CCWWGG 3 cut(s) 304, 2227, 3750
TaiI ACGT 5 cut(s) 745, 2408, 2447, 2527, 2687
TaqI TCGA 4 cut(s) 1241, 3148, 3166, 3408
TatI WGTACW 5 cut(s) 51, 1079, 2265, 3425, 3508
TseFI GTSAC 3 cut(s) 1051, 3067, 3170
TseI GCWGC 1 cut(s) 3297
Tsp45I GTSAC 3 cut(s) 1051, 3067, 3170
TspDTI ATGAA 9 cut(s) 522, 2190, 2232, 2475, 2598, 2677, 3225, 3255, 3426
TspGWI ACGGA 4 cut(s) 1491, 2294, 3210, 3538
Van91I CCANNNNNTGG 1 cut(s) 2859
Vha464I CTTAAG 2 cut(s) 1199, 1739
VneI GTGCAC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 3317
VspI ATTAAT 1 cut(s) 2385
XapI RAATTY 9 cut(s) 654, 672, 949, 1632, 1808, 2619, 2654, 2804, 3740
XbaI TCTAGA 2 cut(s) 866, 2233
XceI RCATGY 4 cut(s) 898, 1460, 2087, 3128
XcmI CCANNNNNNNNNTGG 2 cut(s) 1991, 2141
XmiI GTMKAC 5 cut(s) 353, 1377, 1873, 2595, 3697
XmnI GAANNNNTTC 3 cut(s) 672, 2328, 3791
ZrmI AGTACT 1 cut(s) 3427
Zsp2I ATGCAT 3 cut(s) 900, 1093, 3126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.