disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 216 - 379 | 8.7e-30 | NB-ARC domain |
| LRR_14 | PF23598 | 619 - 760 | 3.9e-10 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 908 - 1009 | 2.7e-12 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1066 - 1139 | 2.1e-12 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1139 - 1179 | 1.6e-08 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1285 - 1410 | 2.3e-16 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1409 - 1523 | 8.2e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2514, 3080 |
| AarI | CACCTGC | 2 cut(s) | 1124, 3946 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1304 |
| Acc36I | ACCTGC | 3 cut(s) | 1124, 3369, 3946 |
| AccB1I | GGYRCC | 3 cut(s) | 1810, 1819, 3854 |
| AccI | GTMKAC | 3 cut(s) | 2703, 4225, 4468 |
| AccII | CGCG | 1 cut(s) | 588 |
| AccIII | TCCGGA | 1 cut(s) | 4248 |
| AciI | CCGC | 8 cut(s) | 576, 586, 1729, 1805, 1823, 2071, 3596, 3760 |
| AclI | AACGTT | 1 cut(s) | 3282 |
| AclWI | GGATC | 6 cut(s) | 701, 1145, 1158, 1616, 2088, 2508 |
| AcoI | YGGCCR | 4 cut(s) | 1676, 3492, 3686, 4380 |
| AcsI | RAATTY | 8 cut(s) | 505, 2004, 2663, 2981, 3199, 3864, 3954, 4188 |
| AcvI | CACGTG | 2 cut(s) | 2366, 4097 |
| AcyI | GRCGYC | 1 cut(s) | 717 |
| AfaI | GTAC | 9 cut(s) | 704, 1066, 1442, 1590, 2814, 3061, 3153, 3576, 3934 |
| AfeI | AGCGCT | 1 cut(s) | 1231 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 208, 592, 2616, 3026, 3651 |
| AflIII | ACRYGT | 2 cut(s) | 2257, 4096 |
| AgeI | ACCGGT | 1 cut(s) | 4431 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 486, 985 |
| AhlI | ACTAGT | 1 cut(s) | 121 |
| AjiI | CACGTC | 1 cut(s) | 4571 |
| AjnI | CCWGG | 4 cut(s) | 621, 1837, 2116, 4540 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 183, 215 |
| Alw21I | GWGCWC | 1 cut(s) | 1706 |
| Alw26I | GTCTC | 9 cut(s) | 884, 1100, 1481, 2238, 3099, 3137, 3597, 3795, 4577 |
| Alw44I | GTGCAC | 1 cut(s) | 1702 |
| AlwI | GGATC | 6 cut(s) | 701, 1145, 1158, 1616, 2088, 2508 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1942, 2674, 4592 |
| Ama87I | CYCGRG | 1 cut(s) | 279 |
| Aor13HI | TCCGGA | 1 cut(s) | 4248 |
| Aor51HI | AGCGCT | 1 cut(s) | 1231 |
| AoxI | GGCC | 7 cut(s) | 624, 1676, 3492, 3686, 3741, 4380, 4631 |
| ApaLI | GTGCAC | 1 cut(s) | 1702 |
| ApeKI | GCWGC | 6 cut(s) | 299, 435, 556, 1598, 4073, 4597 |
| ApoI | RAATTY | 8 cut(s) | 505, 2004, 2663, 2981, 3199, 3864, 3954, 4188 |
| AseI | ATTAAT | 2 cut(s) | 3308, 4547 |
| AsiGI | ACCGGT | 1 cut(s) | 4431 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 834, 2313, 2664, 3996 |
| AspLEI | GCGC | 1 cut(s) | 1232 |
| AspS9I | GGNCC | 5 cut(s) | 115, 3217, 3742, 3778, 3875 |
| AsuC2I | CCSGG | 1 cut(s) | 827 |
| AsuHPI | GGTGA | 8 cut(s) | 359, 1148, 2194, 2204, 2342, 2764, 2779, 3572 |
| AsuNHI | GCTAGC | 1 cut(s) | 2207 |
| AvaI | CYCGRG | 1 cut(s) | 279 |
| AvaII | GGWCC | 4 cut(s) | 115, 3217, 3778, 3875 |
| BaeGI | GKGCMC | 1 cut(s) | 1706 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2747, 2780 |
| BalI | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| BamHI | GGATCC | 1 cut(s) | 1150 |
| BanI | GGYRCC | 3 cut(s) | 1810, 1819, 3854 |
| BanII | GRGCYC | 1 cut(s) | 1903 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3558, 3590 |
| BbrPI | CACGTG | 2 cut(s) | 2366, 4097 |
| BbsI | GAAGAC | 4 cut(s) | 1974, 3236, 3494, 4495 |
| Bbv12I | GWGCWC | 1 cut(s) | 1706 |
| BbvI | GCAGC | 6 cut(s) | 286, 447, 568, 1585, 4085, 4584 |
| BccI | CCATC | 6 cut(s) | 695, 1556, 1783, 2420, 2432, 4516 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1491, 1525 |
| BciT130I | CCWGG | 4 cut(s) | 623, 1839, 2118, 4542 |
| BciVI | GTATCC | 1 cut(s) | 3454 |
| BcnI | CCSGG | 1 cut(s) | 827 |
| BcoDI | GTCTC | 9 cut(s) | 884, 1100, 1481, 2238, 3099, 3137, 3597, 3795, 4577 |
| BcuI | ACTAGT | 1 cut(s) | 121 |
| BfmI | CTRYAG | 4 cut(s) | 54, 894, 2095, 4226 |
| BfoI | RGCGCY | 1 cut(s) | 1233 |
| BfuAI | ACCTGC | 3 cut(s) | 1124, 3369, 3946 |
| BfuI | GTATCC | 1 cut(s) | 3454 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3491 |
| BglII | AGATCT | 2 cut(s) | 16, 832 |
| BisI | GCNGC | 6 cut(s) | 300, 436, 557, 1599, 4074, 4598 |
| BlpI | GCTNAGC | 2 cut(s) | 497, 4593 |
| BlsI | GCNGC | 6 cut(s) | 301, 437, 558, 1600, 4075, 4599 |
| BmcAI | AGTACT | 1 cut(s) | 3576 |
| Bme1390I | CCNGG | 5 cut(s) | 623, 827, 1839, 2118, 4542 |
| Bme18I | GGWCC | 4 cut(s) | 115, 3217, 3778, 3875 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 486, 985 |
| BmeT110I | CYCGRG | 1 cut(s) | 279 |
| BmgBI | CACGTC | 1 cut(s) | 4571 |
| BmgT120I | GGNCC | 5 cut(s) | 115, 3217, 3742, 3778, 3875 |
| BmiI | GGNNCC | 8 cut(s) | 972, 1152, 1812, 1821, 1922, 3218, 3780, 3856 |
| BmrFI | CCNGG | 5 cut(s) | 623, 827, 1839, 2118, 4542 |
| BmrI | ACTGGG | 1 cut(s) | 3035 |
| BmsI | GCATC | 6 cut(s) | 609, 1946, 2257, 2689, 4125, 4147 |
| BmtI | GCTAGC | 1 cut(s) | 2211 |
| BmuI | ACTGGG | 1 cut(s) | 3035 |
| BpiI | GAAGAC | 4 cut(s) | 1974, 3236, 3494, 4495 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3092, 3124, 4072, 4104 |
| BpmI | CTGGAG | 5 cut(s) | 293, 633, 2243, 2525, 4471 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 497, 4593 |
| BpuEI | CTTGAG | 2 cut(s) | 1734, 3240 |
| BpuMI | CCSGG | 1 cut(s) | 827 |
| BsaAI | YACGTR | 2 cut(s) | 2366, 4097 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3080 |
| BsaHI | GRCGYC | 1 cut(s) | 717 |
| BsaJI | CCNNGG | 5 cut(s) | 1259, 1837, 3858, 3925, 3948 |
| BsaWI | WCCGGW | 3 cut(s) | 1605, 4248, 4431 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1240, 1270, 2216, 2246, 2279, 2309, 2523, 2553 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 208, 592, 2616, 3026, 3651 |
| Bse118I | RCCGGY | 2 cut(s) | 4431, 4602 |
| Bse1I | ACTGG | 8 cut(s) | 45, 276, 616, 1821, 2064, 2148, 3030, 4634 |
| Bse3DI | GCAATG | 4 cut(s) | 60, 1600, 1766, 4393 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3080 |
| BseAI | TCCGGA | 1 cut(s) | 4248 |
| BseBI | CCWGG | 4 cut(s) | 623, 1839, 2118, 4542 |
| BseDI | CCNNGG | 5 cut(s) | 1259, 1837, 3858, 3925, 3948 |
| BseJI | GATNNNNATC | 1 cut(s) | 3080 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 208, 592, 2616, 3026, 3651 |
| BseMI | GCAATG | 4 cut(s) | 60, 1600, 1766, 4393 |
| BseMII | CTCAG | 5 cut(s) | 488, 3501, 3512, 3664, 4584 |
| BseNI | ACTGG | 8 cut(s) | 45, 276, 616, 1821, 2064, 2148, 3030, 4634 |
| BseRI | GAGGAG | 6 cut(s) | 407, 2480, 2483, 2486, 2495, 4474 |
| BseSI | GKGCMC | 1 cut(s) | 1706 |
| BseXI | GCAGC | 6 cut(s) | 286, 447, 568, 1585, 4085, 4584 |
| BseYI | CCCAGC | 4 cut(s) | 1403, 1765, 3883, 4076 |
| BsgI | GTGCAG | 4 cut(s) | 4092, 4228, 4518, 4583 |
| Bsh1236I | CGCG | 1 cut(s) | 588 |
| BshFI | GGCC | 7 cut(s) | 626, 1678, 3494, 3688, 3743, 4382, 4633 |
| BshNI | GGYRCC | 3 cut(s) | 1810, 1819, 3854 |
| BshTI | ACCGGT | 1 cut(s) | 4431 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1706 |
| BsiHKCI | CYCGRG | 1 cut(s) | 279 |
| BsiSI | CCGG | 6 cut(s) | 202, 827, 1606, 4249, 4432, 4603 |
| BslFI | GGGAC | 4 cut(s) | 2360, 2593, 2632, 2952 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 208, 592, 2616, 3026, 3651 |
| BsmAI | GTCTC | 9 cut(s) | 884, 1100, 1481, 2238, 3099, 3137, 3597, 3795, 4577 |
| BsmBI | CGTCTC | 2 cut(s) | 3597, 4577 |
| BsmFI | GGGAC | 4 cut(s) | 2360, 2593, 2632, 2952 |
| BsmI | GAATGC | 4 cut(s) | 437, 2885, 3352, 3675 |
| BsnI | GGCC | 7 cut(s) | 626, 1678, 3494, 3688, 3743, 4382, 4633 |
| BsoBI | CYCGRG | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1706, 1903 |
| Bsp13I | TCCGGA | 1 cut(s) | 4248 |
| Bsp1407I | TGTACA | 3 cut(s) | 2812, 3151, 3932 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 497, 4593 |
| Bsp19I | CCATGG | 2 cut(s) | 1259, 3858 |
| BspACI | CCGC | 8 cut(s) | 576, 586, 1729, 1805, 1823, 2071, 3596, 3760 |
| BspANI | GGCC | 7 cut(s) | 626, 1678, 3494, 3688, 3743, 4382, 4633 |
| BspCNI | CTCAG | 5 cut(s) | 489, 3500, 3513, 3663, 4585 |
| BspEI | TCCGGA | 1 cut(s) | 4248 |
| BspFNI | CGCG | 1 cut(s) | 588 |
| BspHI | TCATGA | 2 cut(s) | 2322, 3097 |
| BspLI | GGNNCC | 8 cut(s) | 972, 1152, 1812, 1821, 1922, 3218, 3780, 3856 |
| BspMI | ACCTGC | 3 cut(s) | 1124, 3369, 3946 |
| BspOI | GCTAGC | 1 cut(s) | 2211 |
| BspPI | GGATC | 6 cut(s) | 701, 1145, 1158, 1616, 2088, 2508 |
| BspQI | GCTCTTC | 1 cut(s) | 79 |
| BspT107I | GGYRCC | 3 cut(s) | 1810, 1819, 3854 |
| BsrDI | GCAATG | 4 cut(s) | 60, 1600, 1766, 4393 |
| BsrFI | RCCGGY | 2 cut(s) | 4431, 4602 |
| BsrGI | TGTACA | 3 cut(s) | 2812, 3151, 3932 |
| BsrI | ACTGG | 8 cut(s) | 45, 276, 616, 1821, 2064, 2148, 3030, 4634 |
| BssAI | RCCGGY | 2 cut(s) | 4431, 4602 |
| BssECI | CCNNGG | 5 cut(s) | 1259, 1837, 3858, 3925, 3948 |
| BssNI | GRCGYC | 1 cut(s) | 717 |
| BssT1I | CCWWGG | 3 cut(s) | 1259, 3858, 3948 |
| Bst2UI | CCWGG | 4 cut(s) | 623, 1839, 2118, 4542 |
| BstACI | GRCGYC | 1 cut(s) | 717 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1499 |
| BstAUI | TGTACA | 3 cut(s) | 2812, 3151, 3932 |
| BstBAI | YACGTR | 2 cut(s) | 2366, 4097 |
| BstDSI | CCRYGG | 2 cut(s) | 1259, 3858 |
| BstFNI | CGCG | 1 cut(s) | 588 |
| BstH2I | RGCGCY | 1 cut(s) | 1233 |
| BstHHI | GCGC | 1 cut(s) | 1232 |
| BstMAI | GTCTC | 9 cut(s) | 884, 1100, 1481, 2238, 3099, 3137, 3597, 3795, 4577 |
| BstNI | CCWGG | 4 cut(s) | 623, 1839, 2118, 4542 |
| BstNSI | RCATGY | 5 cut(s) | 1281, 2261, 2363, 4620, 4624 |
| BstSCI | CCNGG | 5 cut(s) | 621, 825, 1837, 2116, 4540 |
| BstSFI | CTRYAG | 4 cut(s) | 54, 894, 2095, 4226 |
| BstSLI | GKGCMC | 1 cut(s) | 1706 |
| BstUI | CGCG | 1 cut(s) | 588 |
| BstV1I | GCAGC | 6 cut(s) | 286, 447, 568, 1585, 4085, 4584 |
| BstV2I | GAAGAC | 4 cut(s) | 1974, 3236, 3494, 4495 |
| BstX2I | RGATCY | 5 cut(s) | 16, 832, 1150, 1621, 2080 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1193, 4390 |
| BstYI | RGATCY | 5 cut(s) | 16, 832, 1150, 1621, 2080 |
| BsuI | GTATCC | 1 cut(s) | 3454 |
| BsuRI | GGCC | 7 cut(s) | 626, 1678, 3494, 3688, 3743, 4382, 4633 |
| BtgI | CCRYGG | 2 cut(s) | 1259, 3858 |
| BtgZI | GCGATG | 2 cut(s) | 1569, 2898 |
| BtrI | CACGTC | 1 cut(s) | 4571 |
| BtsI | GCAGTG | 4 cut(s) | 399, 1415, 1455, 3145 |
| BveI | ACCTGC | 3 cut(s) | 1124, 3369, 3946 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1942, 2674, 4592 |
| CciI | TCATGA | 2 cut(s) | 2322, 3097 |
| CfoI | GCGC | 1 cut(s) | 1232 |
| Cfr10I | RCCGGY | 2 cut(s) | 4431, 4602 |
| Cfr13I | GGNCC | 5 cut(s) | 115, 3217, 3742, 3778, 3875 |
| CseI | GACGC | 6 cut(s) | 476, 706, 902, 1277, 1602, 3311 |
| Csp6I | GTAC | 9 cut(s) | 703, 1065, 1441, 1589, 2813, 3060, 3152, 3575, 3933 |
| CspAI | ACCGGT | 1 cut(s) | 4431 |
| CviQI | GTAC | 9 cut(s) | 703, 1065, 1441, 1589, 2813, 3060, 3152, 3575, 3933 |
| DraI | TTTAAA | 2 cut(s) | 1236, 2241 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1304 |
| DriI | GACNNNNNGTC | 2 cut(s) | 486, 985 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1304 |
| EaeI | YGGCCR | 4 cut(s) | 1676, 3492, 3686, 4380 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 486, 985 |
| Eco130I | CCWWGG | 3 cut(s) | 1259, 3858, 3948 |
| Eco24I | GRGCYC | 1 cut(s) | 1903 |
| Eco47I | GGWCC | 4 cut(s) | 115, 3217, 3778, 3875 |
| Eco47III | AGCGCT | 1 cut(s) | 1231 |
| Eco72I | CACGTG | 2 cut(s) | 2366, 4097 |
| Eco88I | CYCGRG | 1 cut(s) | 279 |
| EcoO109I | RGGNCCY | 3 cut(s) | 115, 3217, 3778 |
| EcoRI | GAATTC | 1 cut(s) | 505 |
| EcoRII | CCWGG | 4 cut(s) | 621, 1837, 2116, 4540 |
| EcoT14I | CCWWGG | 3 cut(s) | 1259, 3858, 3948 |
| EcoT22I | ATGCAT | 6 cut(s) | 1504, 1581, 3675, 4140, 4618, 4622 |
| EcoT38I | GRGCYC | 1 cut(s) | 1903 |
| ErhI | CCWWGG | 3 cut(s) | 1259, 3858, 3948 |
| Esp3I | CGTCTC | 2 cut(s) | 3597, 4577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1313, 1345 |
| FaqI | GGGAC | 4 cut(s) | 2360, 2593, 2632, 2952 |
| FauI | CCCGC | 1 cut(s) | 3753 |
| FblI | GTMKAC | 3 cut(s) | 2703, 4225, 4468 |
| Fnu4HI | GCNGC | 6 cut(s) | 300, 436, 557, 1599, 4074, 4598 |
| FriOI | GRGCYC | 1 cut(s) | 1903 |
| Fsp4HI | GCNGC | 6 cut(s) | 300, 436, 557, 1599, 4074, 4598 |
| GlaI | GCGC | 1 cut(s) | 1231 |
| GluI | GCNGC | 6 cut(s) | 300, 436, 557, 1599, 4074, 4598 |
| GsaI | CCCAGC | 4 cut(s) | 1407, 1769, 3887, 4080 |
| GsuI | CTGGAG | 5 cut(s) | 293, 633, 2243, 2525, 4471 |
| HaeII | RGCGCY | 1 cut(s) | 1233 |
| HaeIII | GGCC | 7 cut(s) | 626, 1678, 3494, 3688, 3743, 4382, 4633 |
| HapII | CCGG | 6 cut(s) | 202, 827, 1606, 4249, 4432, 4603 |
| HgaI | GACGC | 6 cut(s) | 476, 706, 902, 1277, 1602, 3311 |
| HhaI | GCGC | 1 cut(s) | 1232 |
| Hin1I | GRCGYC | 1 cut(s) | 717 |
| Hin6I | GCGC | 1 cut(s) | 1230 |
| HinP1I | GCGC | 1 cut(s) | 1230 |
| HincII | GTYRAC | 3 cut(s) | 645, 1359, 2704 |
| HindII | GTYRAC | 3 cut(s) | 645, 1359, 2704 |
| HindIII | AAGCTT | 3 cut(s) | 2131, 2167, 4321 |
| HpaII | CCGG | 6 cut(s) | 202, 827, 1606, 4249, 4432, 4603 |
| HphI | GGTGA | 8 cut(s) | 359, 1148, 2194, 2204, 2342, 2764, 2779, 3572 |
| Hpy99I | CGWCG | 6 cut(s) | 492, 495, 722, 3305, 3560, 3592 |
| HpyCH4IV | ACGT | 4 cut(s) | 2365, 3282, 4096, 4570 |
| HpySE526I | ACGT | 4 cut(s) | 2365, 3282, 4096, 4570 |
| Hsp92I | GRCGYC | 1 cut(s) | 717 |
| HspAI | GCGC | 1 cut(s) | 1230 |
| Kpn2I | TCCGGA | 1 cut(s) | 4248 |
| LguI | GCTCTTC | 1 cut(s) | 79 |
| LmnI | GCTCC | 3 cut(s) | 2224, 3654, 4487 |
| Lsp1109I | GCAGC | 6 cut(s) | 286, 447, 568, 1585, 4085, 4584 |
| LweI | GCATC | 6 cut(s) | 609, 1946, 2257, 2689, 4125, 4147 |
| MaeII | ACGT | 4 cut(s) | 2365, 3282, 4096, 4570 |
| MfeI | CAATTG | 4 cut(s) | 171, 195, 975, 2176 |
| MflI | RGATCY | 5 cut(s) | 16, 832, 1150, 1621, 2080 |
| MhlI | GDGCHC | 2 cut(s) | 1706, 1903 |
| MlsI | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| MluNI | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| MlyI | GAGTC | 8 cut(s) | 86, 995, 2934, 3101, 3254, 3532, 4081, 4231 |
| MmeI | TCCRAC | 6 cut(s) | 1859, 2058, 2112, 2832, 3902, 3990 |
| Mox20I | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| Mph1103I | ATGCAT | 6 cut(s) | 1504, 1581, 3675, 4140, 4618, 4622 |
| MroI | TCCGGA | 1 cut(s) | 4248 |
| MroXI | GAANNNNTTC | 4 cut(s) | 834, 2313, 2664, 3996 |
| MscI | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| MslI | CAYNNNNRTG | 8 cut(s) | 363, 2341, 2358, 2364, 2685, 2763, 4121, 4611 |
| Msp20I | TGGCCA | 4 cut(s) | 1678, 3494, 3688, 4382 |
| MspA1I | CMGCKG | 3 cut(s) | 1807, 1825, 4076 |
| MspI | CCGG | 6 cut(s) | 202, 827, 1606, 4249, 4432, 4603 |
| MspR9I | CCNGG | 5 cut(s) | 623, 827, 1839, 2118, 4542 |
| MunI | CAATTG | 4 cut(s) | 171, 195, 975, 2176 |
| Mva1269I | GAATGC | 4 cut(s) | 437, 2885, 3352, 3675 |
| MvaI | CCWGG | 4 cut(s) | 623, 1839, 2118, 4542 |
| MvnI | CGCG | 1 cut(s) | 588 |
| NciI | CCSGG | 1 cut(s) | 827 |
| NcoI | CCATGG | 2 cut(s) | 1259, 3858 |
| NheI | GCTAGC | 1 cut(s) | 2207 |
| NlaIV | GGNNCC | 8 cut(s) | 972, 1152, 1812, 1821, 1922, 3218, 3780, 3856 |
| NmuCI | GTSAC | 6 cut(s) | 1216, 1570, 1724, 2182, 4114, 4516 |
| NsiI | ATGCAT | 6 cut(s) | 1504, 1581, 3675, 4140, 4618, 4622 |
| NspI | RCATGY | 5 cut(s) | 1281, 2261, 2363, 4620, 4624 |
| PaeI | GCATGC | 3 cut(s) | 2363, 4620, 4624 |
| PaeR7I | CTCGAG | 1 cut(s) | 279 |
| PagI | TCATGA | 2 cut(s) | 2322, 3097 |
| PaqCI | CACCTGC | 2 cut(s) | 1124, 3946 |
| PciI | ACATGT | 1 cut(s) | 2257 |
| PciSI | GCTCTTC | 1 cut(s) | 79 |
| PctI | GAATGC | 4 cut(s) | 437, 2885, 3352, 3675 |
| PdmI | GAANNNNTTC | 4 cut(s) | 834, 2313, 2664, 3996 |
| PinAI | ACCGGT | 1 cut(s) | 4431 |
| PkrI | GCNGC | 6 cut(s) | 301, 437, 558, 1600, 4075, 4599 |
| PleI | GAGTC | 8 cut(s) | 86, 994, 2934, 3101, 3254, 3531, 4081, 4230 |
| PmaCI | CACGTG | 2 cut(s) | 2366, 4097 |
| PmlI | CACGTG | 2 cut(s) | 2366, 4097 |
| PpsI | GAGTC | 8 cut(s) | 86, 994, 2934, 3101, 3254, 3531, 4081, 4230 |
| Ppu21I | YACGTR | 2 cut(s) | 2366, 4097 |
| PpuMI | RGGWCCY | 3 cut(s) | 115, 3217, 3778 |
| PscI | ACATGT | 1 cut(s) | 2257 |
| PshBI | ATTAAT | 2 cut(s) | 3308, 4547 |
| PsiI | TTATAA | 2 cut(s) | 2514, 3080 |
| Psp1406I | AACGTT | 1 cut(s) | 3282 |
| Psp5II | RGGWCCY | 3 cut(s) | 115, 3217, 3778 |
| Psp6I | CCWGG | 4 cut(s) | 621, 1837, 2116, 4540 |
| PspCI | CACGTG | 2 cut(s) | 2366, 4097 |
| PspFI | CCCAGC | 4 cut(s) | 1403, 1765, 3883, 4076 |
| PspGI | CCWGG | 4 cut(s) | 621, 1837, 2116, 4540 |
| PspN4I | GGNNCC | 8 cut(s) | 972, 1152, 1812, 1821, 1922, 3218, 3780, 3856 |
| PspPI | GGNCC | 5 cut(s) | 115, 3217, 3742, 3778, 3875 |
| PspPPI | RGGWCCY | 3 cut(s) | 115, 3217, 3778 |
| PspXI | VCTCGAGB | 1 cut(s) | 279 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1942, 2674, 4592 |
| PsuI | RGATCY | 5 cut(s) | 16, 832, 1150, 1621, 2080 |
| PvuII | CAGCTG | 1 cut(s) | 4076 |
| RsaI | GTAC | 9 cut(s) | 704, 1066, 1442, 1590, 2814, 3061, 3153, 3576, 3934 |
| RsaNI | GTAC | 9 cut(s) | 703, 1065, 1441, 1589, 2813, 3060, 3152, 3575, 3933 |
| RseI | CAYNNNNRTG | 8 cut(s) | 363, 2341, 2358, 2364, 2685, 2763, 4121, 4611 |
| SalI | GTCGAC | 1 cut(s) | 2702 |
| SapI | GCTCTTC | 1 cut(s) | 79 |
| SatI | GCNGC | 6 cut(s) | 300, 436, 557, 1599, 4074, 4598 |
| Sau96I | GGNCC | 5 cut(s) | 115, 3217, 3742, 3778, 3875 |
| ScaI | AGTACT | 1 cut(s) | 3576 |
| SchI | GAGTC | 8 cut(s) | 86, 995, 2934, 3101, 3254, 3532, 4081, 4231 |
| ScrFI | CCNGG | 5 cut(s) | 623, 827, 1839, 2118, 4542 |
| SduI | GDGCHC | 2 cut(s) | 1706, 1903 |
| SfaNI | GCATC | 6 cut(s) | 609, 1946, 2257, 2689, 4125, 4147 |
| SfcI | CTRYAG | 4 cut(s) | 54, 894, 2095, 4226 |
| Sfr274I | CTCGAG | 1 cut(s) | 279 |
| SinI | GGWCC | 4 cut(s) | 115, 3217, 3778, 3875 |
| SlaI | CTCGAG | 1 cut(s) | 279 |
| SmiI | ATTTAAAT | 1 cut(s) | 2241 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 363, 2341, 2358, 2364, 2685, 2763, 4121, 4611 |
| SmlI | CTYRAG | 3 cut(s) | 279, 1749, 3255 |
| SmoI | CTYRAG | 3 cut(s) | 279, 1749, 3255 |
| SpeI | ACTAGT | 1 cut(s) | 121 |
| SphI | GCATGC | 3 cut(s) | 2363, 4620, 4624 |
| SsiI | CCGC | 8 cut(s) | 576, 586, 1729, 1805, 1823, 2071, 3596, 3760 |
| SspI | AATATT | 2 cut(s) | 3475, 4029 |
| StyD4I | CCNGG | 5 cut(s) | 621, 825, 1837, 2116, 4540 |
| StyI | CCWWGG | 3 cut(s) | 1259, 3858, 3948 |
| SwaI | ATTTAAAT | 1 cut(s) | 2241 |
| TaiI | ACGT | 4 cut(s) | 2368, 3285, 4099, 4573 |
| TatI | WGTACW | 5 cut(s) | 1440, 2812, 3151, 3574, 3932 |
| TseFI | GTSAC | 6 cut(s) | 1216, 1570, 1724, 2182, 4114, 4516 |
| TseI | GCWGC | 6 cut(s) | 299, 435, 556, 1598, 4073, 4597 |
| Tsp45I | GTSAC | 6 cut(s) | 1216, 1570, 1724, 2182, 4114, 4516 |
| TspGWI | ACGGA | 6 cut(s) | 121, 720, 915, 2976, 3436, 4133 |
| VneI | GTGCAC | 1 cut(s) | 1702 |
| VpaK11BI | GGWCC | 4 cut(s) | 115, 3217, 3778, 3875 |
| VspI | ATTAAT | 2 cut(s) | 3308, 4547 |
| XapI | RAATTY | 8 cut(s) | 505, 2004, 2663, 2981, 3199, 3864, 3954, 4188 |
| XbaI | TCTAGA | 2 cut(s) | 1034, 1336 |
| XceI | RCATGY | 5 cut(s) | 1281, 2261, 2363, 4620, 4624 |
| XhoI | CTCGAG | 1 cut(s) | 279 |
| XmiI | GTMKAC | 3 cut(s) | 2703, 4225, 4468 |
| XmnI | GAANNNNTTC | 4 cut(s) | 834, 2313, 2664, 3996 |
| ZrmI | AGTACT | 1 cut(s) | 3576 |
| Zsp2I | ATGCAT | 6 cut(s) | 1504, 1581, 3675, 4140, 4618, 4622 |