Rh1CG251100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000042
Physical Location & Seq
Forward (+)
51417516 .. 51428158
10643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG251100.1

Sequence Viewer

Length: 4461 bp
ATGGATTGTCTTTGTGCAATTGGTAACGGGGTTGTTGGAAAAATAGCCGAGTACACGGTTGAACCATTTGGACGTCTAGTGGGACGCCAAGTGGGTTATCTAATCCACTACAACAAGAATCTTCAAACTCTAATGACTCAAGTGAAGAATTTGAGCTTCGCCAGAGATAGAGTAAAGCAACAGGTTGATGAAGCTGATAGAAGAGGTGAGAAAATCCATAATGATGTCCAAAAATGGCTCGATGAAGTGGCTCAGATCATGAAAGACACGGAAGAATTCTTGAAGGGAAAATGCCAAGCAACTGGAGAGCCAAACGAAGTCTTGAAGGATGAAGGCCAAGCAAATGAAGAGCCAAACGAAGTCTTGAAAGATGAACGTCAAGGAAAGCTGAAGCGTCTCCATCAATTTTGTCCTAATCCGAGACTTCGTTATCAACTAAGCAGAAAGTCAACAAAGTTGGTGGAGGCTGTGGATGAACTCTACAAAAGAAAAGACTTCTCTAGTGTTTCATACAGTGTTCGCCCACAAGAGGTATGTGTCATATCTACTGAAGATTATGAGGCATTTGATTCAAGGATCTCAACCTTGAATAAAATCATGGATGAATTGAGAAGTCCCGGTGCCGACATCATTCTAGTGTATGGTATTGGGGGTGTGGGTAAGACCACACTAGTGGAAGAAGTTCTCAGGCAAGTTACGAAAGATAAGTTGTTTGATGATGCAGTCATGGTACGAGATGTGAAAGTTCCAAACATGGAAGCTATTCAAAAAGAAATCGCTGAAAAGTTAAGTCTTGGAGTTTTATCAAACCAGACTATCCCCGGAAGAGCCAATAGCATATGTGATAGAATAAAAGACAAGAAGACTCTTGTGATTTTGGATGATGTCTGGGAAGAAATTGACTTGAAAACTCTCGGGCTTCCCCACATTCCTACTTGTAAAATACTGCTGACCTCTAGAACTCGAAAGATGTTAACTTCTGATAAGATTAAGCAGAGAGGGTTTTTGCTTGGCATTTTAGGCCAAGATGAAACTTGGCTTTTATTTGAGAAGAAAGCAGGTGATGTTACTAAAGATCCCGCTATAAAATCCTTAGCAACTCAAGTAGCCCTAAGATGTGGAGGTTTGCCTGTTTTGGTTATCACAGTAGCAAGAGCTTTAGAAAATAGTTCTTTACCAATGTGGGAAGATGCCCTGAGATGCCTTGTCAGCTTTGATGAGAAAGGAGACTTGACAAAAAAAACTTACTCGGGTCTTGAATGGAGTTACACTCGATTGAATGAGCAGCTTAAGCCATTGTTCTTGTTGTGTGGTACTACTATACAGGGGAACTCTATTTCTTTGACGAACTTATTGAAATATAGTATGGGTTTGGGTTTTTTTAAAGACCTTACAGTTGAAGCAGCTCGAAATGCATTGTACACACAAGTTGATAAACTTAAGAGTTCTTGTCTATTGCTAGACGGAGATGATAATACATGTGTCAGAATGCATGATCTTGTACATGATGTTGCTATCCGGATTGCATCGAAGGATCAACACGTCCTAGTAAAAGATGGAGTTGATCAGCTGAAAGAATGGCCAGACCAAGAATCATTTAAAAGGTGCAGTAAGATCTCCTGGTCCTGTTGCAATATCCCCAGTCTTCCTGAAGTACCTTGGAAATGTCCTGAGCTAGAAATGTTTCTTTTGCATGGTAATGGTAAAGGAAATGAACACCTGATAGAGATTCCGAGCAAATTTTTTGATGAGATGCAAAAACTCAAGGTGTTGGATTTTTGCAATCTGCCTCTTATGTCACTACCTCCATCTCTTGAATTGCTGAAAACCAATCTTCAAACATTGTGTTTAGATGGATGCACGTTGGAAGACATAGCTCGAGTCGGAGAGCTAAGCAACTTGGAAACTCTTAGCTTTGCTAACTCCAAGGTCAAAGAGTTGCCGAAAGAAATAGCGAAATTGACTCATCTGCGGTTGTTGGACTTGTCGGATTGCCCTAAGCTTGAAGTGATTTCACCTAATGTCATATCAAGTTTGACAAGGCTCGAAGACTTGAGAATGAAAAACAGTTTTGAAAAATGGGAGGCTGAGGGAGACATCAACGAAAGAAAGAATGCTAGTCTTTTGGAGCTGAAGCAGTTATCTCGACTAACTGCATTAGAAATATATATTCCAGATGTTGATATTCTTCCACCAAACTTGTTCTCCAATATGCTGAAAAGATATCATATATATATTGGTGGTGTGTGGGAAAGTACGGGGAAGAACACTATGGCTGAAACGACCCTCAATACCCTAAAGCTCGAGCTCACTCCCAGCAATCAATCGGATCAAGGGCTAAGAAGGCTGATGATGAGATCTGAAGATTTGACCTTGGATGTGATGGAAGGTGTTAATAATAGTTTGTATCAATTAGACAACGAAGGTTCTCTGCACCTGAAACGTCTCCAACTCCAAAAGAATGTTGATCTTACATATATCATTAACAAGAAGGTTGTGTTCCCCAACTTAACAACCTTGAGCATTCAAAAATGTGATCATTTGAGATTCTTGTTCTCATGTTCTATGGCTAAAAGTTTCGTAAAGCTCAAACATCTTGAGATACGCAACTGCAAAAGCATGGAAGAGGTAGTATCATCAACAACAGATTACAATGAAGAAAATATGAATAACTTGTTCTGTAAGCTTGAAACTCTGGAACTGGAAGAACTTCCATGCCTCGGTAGAATCTGCACAGGAGCTCGTATTGAATTTCCGTCCTTGAAGAAGTTGGATATAAGTTATTGTAAAAAATTGAAGGCATTCATCTGTGACCCTATGAGTCATAAAAGTACAAGACTCTGCAAAGAAATTGAAGAGAGGGAGTCAGAGGAGAGCCCAGGTGTTGAACATGAGAGTGTTGCAGAAGGCAACCTTTTTAACGACAAGGTAAGATTTCCTAGCTTGGAGGAATTGAAAATATATCGGTTACCGGAGTTGCAGACAATATGGCACAATAACCAACTTGCTGATCAAGACTGTTTTTGCCGACTCAAACAAGTTGACGTTAGAGATTGCAAGAGTCTGATAAGCATATTTCCGCCTAGTATCATGGGGAGATTGAATGCTCTGGAAAGATTACTGATTATTAAATGCGACTCGCTAAAAGTGGTATTTGAAGTCGGAGGAATTAATGTTGAAGAGACACGTGTCAACAGATCAACCCCTTATGATCAGTGGAAACCTTTGTACTGTCAAAATCTTGAATTCGTGAGCATACGCTTTGCTGGCAGTTTGAAAAATATATTCCCAGCCTCTTTGGCCAGAGGACTTGAGCAGCTACGAATTCTGGGGGTGTCGGATTGTCGTGATCTGCTGGAAATAGTTGGTGAGGAAGAGGGAGGGGTAGAATTACCAACGCCTCCTCAGTTTGTGTTCCCAAAGGCAACAGATGTGGTATTTTTACGTCTGCCCTTCCTCAAGAGTTTTTATCCGGGAAAGCATACTTCCACGTGGCCATTACTCAAAGGTTTGATGGTATCAGAAATTAATGAGGTAGAAATTTCAATCTTTCAGGATAAACATGAGTCGGGCCCAGTAAAGTCTATCTTTCCAATTAACAAGGATTCATTCCCCAACTTGGAAAAATTGGCCGTTGACAACATGAGAATTTGGTACGGTACATCCCCAGTACCAACAGAATCCTTCAGAAACCTAAAATGTGTTACATCTAGTAATTGGGCACATTTCTCCCAGCAAGCTACGTCACTCTTCCTTCAGAAATTACACAATATTGAAAAAATTGAAGTGAATTTTGCTCCTCCTGAAGAAATATTTGTCAGTGAAGGAAACAGTAGTTGTGAGGAAATACATGCAGTTGCGACCCTACCAAGCATACGAATTTTAAAGTTTTACTATTGCGCAATGTTGCATCTAGGGAAGGAGAACTCCGGATCAGGAGGCCCAATTTTTCCAAACTTGGAAGTTCTAGAGGTGACGCGTCATTCTCTCGGATTAAAGAATTTGGAATCATCAGCGATTTCCTTCCGGAATTTAACAACTTTGAAAGTAGTTGATTGTCCGGGCTTGGAACATTTAATAACTTATTCAGTGGCTAAAAGCTTAATGCAACTGACAACAATGGAAGTGAGTGATTGTCCAAGAATTGCAGTCATAGTGACAACAGACGGTGATGATGCAGCAGAAGAGATTACTTTCAGCCGATTGCAAGTTTTAACCCTTCGGAGACTGCCAAAAATGCAAGGCTTTTGCTCCGGAAGTTGCATTGTGAATCTCCCATCCTTGACTACTTTATCCATGAGCAACCGCCTTAAATTGAAGATTTTCCAAGAAAAGCTAAAGATAACAAGCAAGCACTCTGACACGGAGGAGGAGGAGGAAGATAGTGAGGAGGAGGAGGAGGAAGACAGTGTGGATGAGGAAATAGGCGTGCCGAGTGCTGAAACAAATATTGCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1486

Amino Acids

168.18

Weight (kDa)

5.55

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_16 PF13191 192 - 235 3.7e-06 AAA ATPase domain
NB-ARC PF00931 195 - 355 3.5e-27 NB-ARC domain
LRR_14 PF23598 586 - 910 1.4e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 814 - 935 5.9e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 978 - 1046 4.3e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 982 - 1062 2.8e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1333 - 1438 1.1e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1049
AatII GACGTC 1 cut(s) 76
Acc16I TGCGCA 1 cut(s) 3901
Acc36I ACCTGC 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 620
AccII CGCG 1 cut(s) 3979
AccIII TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
AciI CCGC 4 cut(s) 1080, 1972, 3080, 4306
AclWI GGATC 5 cut(s) 584, 1070, 1542, 2337, 3940
AcoI YGGCCR 4 cut(s) 1580, 3300, 3494, 3630
AcuI CTGAAG 8 cut(s) 410, 570, 1671, 2153, 2382, 3670, 3740, 3825
AcvI CACGTG 2 cut(s) 3188, 3492
AcyI GRCGYC 2 cut(s) 73, 85
AfiI CCNNNNNNNGG 3 cut(s) 529, 2720, 3619
AflII CTTAAG 2 cut(s) 1289, 1439
AflIII ACRYGT 5 cut(s) 1478, 1540, 3185, 3187, 3977
AhlI ACTAGT 1 cut(s) 670
AjiI CACGTC 1 cut(s) 1543
AjnI CCWGG 2 cut(s) 1619, 2878
AleI CACNNNNGTG 1 cut(s) 671
Alw21I GWGCWC 2 cut(s) 2310, 2743
Alw26I GTCTC 7 cut(s) 401, 415, 1221, 2088, 2450, 3176, 4219
AlwI GGATC 5 cut(s) 584, 1070, 1542, 2337, 3940
Ama87I CYCGRG 4 cut(s) 914, 1249, 1878, 2303
Aor13HI TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
AoxI GGCC 8 cut(s) 334, 1021, 1580, 3300, 3494, 3571, 3630, 3940
ApaI GGGCCC 1 cut(s) 3575
ApeKI GCWGC 4 cut(s) 1285, 1403, 3316, 4178
AseI ATTAAT 2 cut(s) 3171, 3528
Asp700I GAANNNNTTC 6 cut(s) 681, 762, 1683, 2709, 2801, 4322
AspLEI GCGC 1 cut(s) 3902
AspS9I GGNCC 4 cut(s) 1623, 3571, 3572, 3941
AsuC2I CCSGG 4 cut(s) 618, 822, 3474, 4062
AsuHPI GGTGA 6 cut(s) 218, 1073, 2007, 3380, 3985, 4181
AvaI CYCGRG 4 cut(s) 914, 1249, 1878, 2303
AvaII GGWCC 1 cut(s) 1623
BaeGI GKGCMC 2 cut(s) 3575, 3724
BalI TGGCCA 3 cut(s) 1582, 3302, 3496
BanI GGYRCC 1 cut(s) 620
BanII GRGCYC 4 cut(s) 2310, 2743, 2879, 3575
BbrPI CACGTG 2 cut(s) 3188, 3492
BbsI GAAGAC 5 cut(s) 869, 1637, 1875, 2055, 4410
Bbv12I GWGCWC 2 cut(s) 2310, 2743
BbvCI CCTCAGC 1 cut(s) 2088
BbvI GCAGC 4 cut(s) 1297, 1415, 3328, 4190
BccI CCATC 7 cut(s) 408, 1550, 1816, 1847, 2377, 3508, 4285
BceAI ACGGC 1 cut(s) 3617
BcgI CGANNNNNNTGC 2 cut(s) 2126, 2160
BciT130I CCWGG 2 cut(s) 1621, 2880
BclI TGATCA 4 cut(s) 1564, 2536, 3010, 3211
BcnI CCSGG 4 cut(s) 618, 822, 3474, 4062
BcoDI GTCTC 7 cut(s) 401, 415, 1221, 2088, 2450, 3176, 4219
BcuI ACTAGT 1 cut(s) 670
BfrI CTTAAG 2 cut(s) 1289, 1439
BfuAI ACCTGC 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 3299
BglII AGATCT 2 cut(s) 1614, 2357
BisI GCNGC 4 cut(s) 1286, 1404, 3317, 4179
BlpI GCTNAGC 1 cut(s) 1892
BlsI GCNGC 4 cut(s) 1287, 1405, 3318, 4180
Bme1390I CCNGG 6 cut(s) 618, 822, 1621, 2880, 3474, 4062
Bme18I GGWCC 1 cut(s) 1623
BmeT110I CYCGRG 4 cut(s) 914, 1249, 1878, 2303
BmgBI CACGTC 1 cut(s) 1543
BmgT120I GGNCC 4 cut(s) 1623, 3571, 3572, 3941
BmiI GGNNCC 2 cut(s) 622, 3573
BmrFI CCNGG 6 cut(s) 618, 822, 1621, 2880, 3474, 4062
BmrI ACTGGG 3 cut(s) 1635, 3569, 3662
BmsI GCATC 8 cut(s) 709, 1180, 1190, 1535, 1743, 1847, 3919, 4165
BmuI ACTGGG 3 cut(s) 1635, 3569, 3662
BoxI GACNNNNGTC 1 cut(s) 3188
BpiI GAAGAC 5 cut(s) 869, 1637, 1875, 2055, 4410
BplI GAGNNNNNCTC 2 cut(s) 1255, 1287
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 4 cut(s) 1093, 1671, 1998, 2088
Bpu1102I GCTNAGC 1 cut(s) 1892
BpuEI CTTGAG 8 cut(s) 123, 1086, 1748, 2074, 2539, 2618, 3332, 3443
BpuMI CCSGG 4 cut(s) 618, 822, 3474, 4062
BsaAI YACGTR 2 cut(s) 3188, 3492
BsaHI GRCGYC 2 cut(s) 73, 85
BsaJI CCNNGG 6 cut(s) 820, 1658, 1926, 2373, 2719, 2878
BsaWI WCCGGW 5 cut(s) 1518, 2971, 3929, 4026, 4253
BsaXI ACNNNNNCTCC 2 cut(s) 2189, 2219
Bsc4I CCNNNNNNNGG 3 cut(s) 529, 2720, 3619
Bse1I ACTGG 5 cut(s) 307, 1641, 2706, 3575, 3668
Bse3DI GCAATG 1 cut(s) 3909
BseAI TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
BseBI CCWGG 2 cut(s) 1621, 2880
BseDI CCNNGG 6 cut(s) 820, 1658, 1926, 2373, 2719, 2878
BseGI GGATG 9 cut(s) 334, 478, 607, 886, 1862, 2383, 3662, 4277, 4420
BseLI CCNNNNNNNGG 3 cut(s) 529, 2720, 3619
BseMI GCAATG 1 cut(s) 3909
BseMII CTCAG 6 cut(s) 266, 700, 1187, 1662, 2079, 3419
BseNI ACTGG 5 cut(s) 307, 1641, 2706, 3575, 3668
BseSI GKGCMC 2 cut(s) 3575, 3724
BseXI GCAGC 4 cut(s) 1297, 1415, 3328, 4190
BseYI CCCAGC 3 cut(s) 2315, 3289, 3732
BsgI GTGCAG 3 cut(s) 1627, 2417, 2716
Bsh1236I CGCG 1 cut(s) 3979
BshFI GGCC 8 cut(s) 336, 1023, 1582, 3302, 3496, 3573, 3632, 3942
BshNI GGYRCC 1 cut(s) 620
BsiHKAI GWGCWC 2 cut(s) 2310, 2743
BsiHKCI CYCGRG 4 cut(s) 914, 1249, 1878, 2303
BsiSI CCGG 9 cut(s) 618, 822, 1519, 2972, 3473, 3930, 4027, 4061, 4254
BslFI GGGAC 2 cut(s) 96, 600
BslI CCNNNNNNNGG 3 cut(s) 529, 2720, 3619
BsmAI GTCTC 7 cut(s) 401, 415, 1221, 2088, 2450, 3176, 4219
BsmBI CGTCTC 2 cut(s) 401, 2450
BsmFI GGGAC 2 cut(s) 96, 600
BsmI GAATGC 5 cut(s) 1494, 2119, 2523, 2801, 3109
BsnI GGCC 8 cut(s) 336, 1023, 1582, 3302, 3496, 3573, 3632, 3942
BsoBI CYCGRG 4 cut(s) 914, 1249, 1878, 2303
Bsp120I GGGCCC 1 cut(s) 3571
Bsp1286I GDGCHC 5 cut(s) 2310, 2743, 2879, 3575, 3724
Bsp13I TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
Bsp1407I TGTACA 2 cut(s) 1419, 1501
Bsp1720I GCTNAGC 1 cut(s) 1892
BspACI CCGC 4 cut(s) 1080, 1972, 3080, 4306
BspANI GGCC 8 cut(s) 336, 1023, 1582, 3302, 3496, 3573, 3632, 3942
BspCNI CTCAG 6 cut(s) 265, 699, 1188, 1663, 2080, 3418
BspEI TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
BspFNI CGCG 1 cut(s) 3979
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 622, 3573
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 5 cut(s) 584, 1070, 1542, 2337, 3940
BspQI GCTCTTC 2 cut(s) 342, 820
BspT107I GGYRCC 1 cut(s) 620
BspTI CTTAAG 2 cut(s) 1289, 1439
BsrDI GCAATG 1 cut(s) 3909
BsrGI TGTACA 2 cut(s) 1419, 1501
BsrI ACTGG 5 cut(s) 307, 1641, 2706, 3575, 3668
BssECI CCNNGG 6 cut(s) 820, 1658, 1926, 2373, 2719, 2878
BssNI GRCGYC 2 cut(s) 73, 85
BssT1I CCWWGG 3 cut(s) 1658, 1926, 2373
Bst2UI CCWGG 2 cut(s) 1621, 2880
Bst6I CTCTTC 9 cut(s) 196, 342, 820, 2619, 2850, 3174, 3369, 3755, 4179
BstACI GRCGYC 2 cut(s) 73, 85
BstAFI CTTAAG 2 cut(s) 1289, 1439
BstAUI TGTACA 2 cut(s) 1419, 1501
BstBAI YACGTR 2 cut(s) 3188, 3492
BstC8I GCNNGC 5 cut(s) 3268, 3738, 4352, 4430, 4456
BstEII GGTNACC 1 cut(s) 2967
BstF5I GGATG 9 cut(s) 334, 478, 607, 886, 1862, 2383, 3662, 4277, 4420
BstFNI CGCG 1 cut(s) 3979
BstHHI GCGC 1 cut(s) 3902
BstMAI GTCTC 7 cut(s) 401, 415, 1221, 2088, 2450, 3176, 4219
BstMWI GCNNNNNNNGC 8 cut(s) 1020, 1209, 1291, 1412, 2344, 3267, 3299, 4237
BstNI CCWGG 2 cut(s) 1621, 2880
BstNSI RCATGY 2 cut(s) 1482, 3854
BstPAI GACNNNNGTC 1 cut(s) 3188
BstPI GGTNACC 1 cut(s) 2967
BstSCI CCNGG 6 cut(s) 616, 820, 1619, 2878, 3472, 4060
BstSLI GKGCMC 2 cut(s) 3575, 3724
BstUI CGCG 1 cut(s) 3979
BstV1I GCAGC 4 cut(s) 1297, 1415, 3328, 4190
BstV2I GAAGAC 5 cut(s) 869, 1637, 1875, 2055, 4410
BstX2I RGATCY 4 cut(s) 576, 1075, 1614, 2357
BstXI CCANNNNNNTGG 2 cut(s) 302, 673
BstYI RGATCY 4 cut(s) 576, 1075, 1614, 2357
BsuRI GGCC 8 cut(s) 336, 1023, 1582, 3302, 3496, 3573, 3632, 3942
BtrI CACGTC 1 cut(s) 1543
BtsCI GGATG 9 cut(s) 334, 478, 607, 886, 1862, 2383, 3662, 4277, 4420
BtsIMutI CAGTG 5 cut(s) 520, 3221, 3826, 4095, 4414
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 5 cut(s) 3268, 3738, 4352, 4430, 4456
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 3902
Cfr13I GGNCC 4 cut(s) 1623, 3571, 3572, 3941
CseI GACGC 4 cut(s) 93, 383, 3968, 3985
CspCI CAANNNNNGTGG 6 cut(s) 441, 476, 2181, 2216, 3414, 3449
DraI TTTAAA 3 cut(s) 1384, 1600, 3885
EaeI YGGCCR 4 cut(s) 1580, 3300, 3494, 3630
Eam1104I CTCTTC 9 cut(s) 196, 342, 820, 2619, 2850, 3174, 3369, 3755, 4179
EarI CTCTTC 9 cut(s) 196, 342, 820, 2619, 2850, 3174, 3369, 3755, 4179
EciI GGCGGA 1 cut(s) 3069
Ecl136II GAGCTC 2 cut(s) 2308, 2741
Eco130I CCWWGG 3 cut(s) 1658, 1926, 2373
Eco24I GRGCYC 4 cut(s) 2310, 2743, 2879, 3575
Eco32I GATATC 1 cut(s) 2225
Eco47I GGWCC 1 cut(s) 1623
Eco53kI GAGCTC 2 cut(s) 2308, 2741
Eco57I CTGAAG 8 cut(s) 410, 570, 1671, 2153, 2382, 3670, 3740, 3825
Eco72I CACGTG 2 cut(s) 3188, 3492
Eco88I CYCGRG 4 cut(s) 914, 1249, 1878, 2303
Eco91I GGTNACC 1 cut(s) 2967
EcoICRI GAGCTC 2 cut(s) 2308, 2741
EcoO65I GGTNACC 1 cut(s) 2967
EcoRI GAATTC 3 cut(s) 275, 3245, 3324
EcoRII CCWGG 2 cut(s) 1619, 2878
EcoRV GATATC 1 cut(s) 2225
EcoT14I CCWWGG 3 cut(s) 1658, 1926, 2373
EcoT22I ATGCAT 2 cut(s) 1417, 1494
EcoT38I GRGCYC 4 cut(s) 2310, 2743, 2879, 3575
ErhI CCWWGG 3 cut(s) 1658, 1926, 2373
Esp3I CGTCTC 2 cut(s) 401, 2450
FalI AAGNNNNNCTT 4 cut(s) 2898, 2930, 3572, 3604
FaqI GGGAC 2 cut(s) 96, 600
FauI CCCGC 1 cut(s) 1087
FauNDI CATATG 1 cut(s) 839
FbaI TGATCA 4 cut(s) 1564, 2536, 3010, 3211
Fnu4HI GCNGC 4 cut(s) 1286, 1404, 3317, 4179
FokI GGATG 9 cut(s) 341, 485, 614, 893, 1869, 2390, 3649, 4264, 4427
FriOI GRGCYC 4 cut(s) 2310, 2743, 2879, 3575
Fsp4HI GCNGC 4 cut(s) 1286, 1404, 3317, 4179
FspI TGCGCA 1 cut(s) 3901
GlaI GCGC 1 cut(s) 3901
GluI GCNGC 4 cut(s) 1286, 1404, 3317, 4179
GsaI CCCAGC 3 cut(s) 2319, 3293, 3736
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 8 cut(s) 336, 1023, 1582, 3302, 3496, 3573, 3632, 3942
HapII CCGG 9 cut(s) 618, 822, 1519, 2972, 3473, 3930, 4027, 4061, 4254
HgaI GACGC 4 cut(s) 93, 383, 3968, 3985
HhaI GCGC 1 cut(s) 3902
Hin1I GRCGYC 2 cut(s) 73, 85
Hin6I GCGC 1 cut(s) 3900
HinP1I GCGC 1 cut(s) 3900
HincII GTYRAC 5 cut(s) 450, 975, 3043, 3193, 3637
HindII GTYRAC 5 cut(s) 450, 975, 3043, 3193, 3637
HindIII AAGCTT 3 cut(s) 2000, 2684, 4099
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 9 cut(s) 618, 822, 1519, 2972, 3473, 3930, 4027, 4061, 4254
HphI GGTGA 6 cut(s) 218, 1073, 2007, 3380, 3985, 4181
Hpy166II GTNNAC 7 cut(s) 54, 450, 975, 1422, 3043, 3193, 3637
Hpy8I GTNNAC 7 cut(s) 54, 450, 975, 1422, 3043, 3193, 3637
HpyF10VI GCNNNNNNNGC 8 cut(s) 1020, 1209, 1291, 1412, 2344, 3267, 3299, 4237
Hsp92I GRCGYC 2 cut(s) 73, 85
HspAI GCGC 1 cut(s) 3900
Kpn2I TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
Ksp22I TGATCA 4 cut(s) 1564, 2536, 3010, 3211
KspAI GTTAAC 1 cut(s) 975
LguI GCTCTTC 2 cut(s) 342, 820
LmnI GCTCC 4 cut(s) 2128, 2738, 3802, 4256
Lsp1109I GCAGC 4 cut(s) 1297, 1415, 3328, 4190
LweI GCATC 8 cut(s) 709, 1180, 1190, 1535, 1743, 1847, 3919, 4165
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 4 cut(s) 576, 1075, 1614, 2357
MhlI GDGCHC 5 cut(s) 2310, 2743, 2879, 3575, 3724
MlsI TGGCCA 3 cut(s) 1582, 3302, 3496
MluI ACGCGT 1 cut(s) 3977
MluNI TGGCCA 3 cut(s) 1582, 3302, 3496
Mox20I TGGCCA 3 cut(s) 1582, 3302, 3496
Mph1103I ATGCAT 2 cut(s) 1417, 1494
MroI TCCGGA 4 cut(s) 1518, 3929, 4026, 4253
MroXI GAANNNNTTC 6 cut(s) 681, 762, 1683, 2709, 2801, 4322
MscI TGGCCA 3 cut(s) 1582, 3302, 3496
MslI CAYNNNNRTG 5 cut(s) 222, 635, 671, 1698, 2895
Msp20I TGGCCA 3 cut(s) 1582, 3302, 3496
MspA1I CMGCKG 1 cut(s) 1570
MspCI CTTAAG 2 cut(s) 1289, 1439
MspI CCGG 9 cut(s) 618, 822, 1519, 2972, 3473, 3930, 4027, 4061, 4254
MspR9I CCNGG 6 cut(s) 618, 822, 1621, 2880, 3474, 4062
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 5 cut(s) 1494, 2119, 2523, 2801, 3109
MvaI CCWGG 2 cut(s) 1621, 2880
MvnI CGCG 1 cut(s) 3979
MwoI GCNNNNNNNGC 8 cut(s) 1020, 1209, 1291, 1412, 2344, 3267, 3299, 4237
NciI CCSGG 4 cut(s) 618, 822, 3474, 4062
NdeI CATATG 1 cut(s) 839
NlaIV GGNNCC 2 cut(s) 622, 3573
NmeAIII GCCGAG 2 cut(s) 73, 4458
NmuCI GTSAC 5 cut(s) 1797, 2810, 3744, 3973, 4156
NsbI TGCGCA 1 cut(s) 3901
NsiI ATGCAT 2 cut(s) 1417, 1494
NspI RCATGY 2 cut(s) 1482, 3854
OliI CACNNNNGTG 1 cut(s) 671
PaeR7I CTCGAG 2 cut(s) 1878, 2303
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 1049
PciI ACATGT 1 cut(s) 1478
PciSI GCTCTTC 2 cut(s) 342, 820
PctI GAATGC 5 cut(s) 1494, 2119, 2523, 2801, 3109
PdmI GAANNNNTTC 6 cut(s) 681, 762, 1683, 2709, 2801, 4322
PfoI TCCNGGA 1 cut(s) 3472
PkrI GCNGC 4 cut(s) 1287, 1405, 3318, 4180
PmaCI CACGTG 2 cut(s) 3188, 3492
PmlI CACGTG 2 cut(s) 3188, 3492
Ppu21I YACGTR 2 cut(s) 3188, 3492
PscI ACATGT 1 cut(s) 1478
PshAI GACNNNNGTC 1 cut(s) 3188
PshBI ATTAAT 2 cut(s) 3171, 3528
Psp124BI GAGCTC 2 cut(s) 2310, 2743
Psp6I CCWGG 2 cut(s) 1619, 2878
PspCI CACGTG 2 cut(s) 3188, 3492
PspEI GGTNACC 1 cut(s) 2967
PspFI CCCAGC 3 cut(s) 2315, 3289, 3732
PspGI CCWGG 2 cut(s) 1619, 2878
PspN4I GGNNCC 2 cut(s) 622, 3573
PspOMI GGGCCC 1 cut(s) 3571
PspPI GGNCC 4 cut(s) 1623, 3571, 3572, 3941
PspXI VCTCGAGB 2 cut(s) 1878, 2303
PsuI RGATCY 4 cut(s) 576, 1075, 1614, 2357
PvuII CAGCTG 1 cut(s) 1570
RseI CAYNNNNRTG 5 cut(s) 222, 635, 671, 1698, 2895
SacI GAGCTC 2 cut(s) 2310, 2743
SapI GCTCTTC 2 cut(s) 342, 820
SatI GCNGC 4 cut(s) 1286, 1404, 3317, 4179
Sau96I GGNCC 4 cut(s) 1623, 3571, 3572, 3941
ScrFI CCNGG 6 cut(s) 618, 822, 1621, 2880, 3474, 4062
SduI GDGCHC 5 cut(s) 2310, 2743, 2879, 3575, 3724
SfaNI GCATC 8 cut(s) 709, 1180, 1190, 1535, 1743, 1847, 3919, 4165
Sfr274I CTCGAG 2 cut(s) 1878, 2303
SinI GGWCC 1 cut(s) 1623
SlaI CTCGAG 2 cut(s) 1878, 2303
SmiMI CAYNNNNRTG 5 cut(s) 222, 635, 671, 1698, 2895
SpeI ACTAGT 1 cut(s) 670
SsiI CCGC 4 cut(s) 1080, 1972, 3080, 4306
SspI AATATT 3 cut(s) 3772, 3813, 4450
SstI GAGCTC 2 cut(s) 2310, 2743
StyD4I CCNGG 6 cut(s) 616, 820, 1619, 2878, 3472, 4060
StyI CCWWGG 3 cut(s) 1658, 1926, 2373
TaqI TCGA 9 cut(s) 240, 964, 1273, 1408, 1529, 1879, 2046, 2146, 2304
TatI WGTACW 5 cut(s) 51, 1419, 1501, 2831, 3228
TscAI CASTG 5 cut(s) 520, 3221, 3826, 4095, 4414
TseFI GTSAC 5 cut(s) 1797, 2810, 3744, 3973, 4156
TseI GCWGC 4 cut(s) 1285, 1403, 3316, 4178
Tsp45I GTSAC 5 cut(s) 1797, 2810, 3744, 3973, 4156
TspGWI ACGGA 4 cut(s) 284, 1479, 2745, 4379
TspRI CASTG 5 cut(s) 520, 3221, 3826, 4095, 4414
Vha464I CTTAAG 2 cut(s) 1289, 1439
VpaK11BI GGWCC 1 cut(s) 1623
VspI ATTAAT 2 cut(s) 3171, 3528
XbaI TCTAGA 2 cut(s) 956, 3967
XceI RCATGY 2 cut(s) 1482, 3854
XhoI CTCGAG 2 cut(s) 1878, 2303
XmnI GAANNNNTTC 6 cut(s) 681, 762, 1683, 2709, 2801, 4322
ZraI GACGTC 1 cut(s) 74
Zsp2I ATGCAT 2 cut(s) 1417, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.