Rroxscaffold_5G00342620

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
11697413 .. 11703016
5604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342620.1

Sequence Viewer

Length: 1725 bp
ATGGAATGTCTAACTATTATTGGAATTATTGGAAAGATTGCTGAGTTTACAGTTGCACCAGTTAGACGCCATGTGGGTTATGTATTCCACTACAACAGGAACCTTAGTAAACTACAAAGTCAAGTTACCAACTTAGAAGCTGCAAGAGAAAGTTTGGAGCACAAGATTGTTGAAGAACAAAGAGCAGGACGAAAAGTGGAAACTTTTGTAACCAATTGGCGGACAGATGTGAATAGGATCATTGGAGAGGCCAAAGATTTCTTAAAAGATGAACATCAAGCAAAGATCAAGTGTATGTATGGATTTTGTCCTAACCTGATGGCTCGTCATCATCTAAGCAGGAAATCAACAAAACTGGTTCAAGATGTTGCTGATCTCTATGGGAAAAAGGACTTTTCCAATATTGCATACGATGTTACACCGGAAGAGGTATGTGTAATATCTACCAAAGATTATCAAGCCTTTGATTCAAGGACTTCAGTTGCTAAGCTGATCATAGATGAACTAAGAAGTTCTAATACAGATATGATTGGGGTGTATGGTATTGGGGGTGTGGGGAAGACAACACTTGTCAAAGAAGTTTATAGGCAAGTCACAAAAGATAAAACATTATTTGATGATGTGGTTATGGGGGTGTGCTTTTTGAAGTCCAAATTCAAAGAGTTGCCTAAAGAAATTGGGCTATTGACACGTCTGCGATTGTTGGATTTGACTGGCTGCTCTCAACTCGAAGTGATTTCACCCAATGTTCTATCAAGCTTGAAAAGATTAGAGCACTTGCGAATGAGAAAAAGTTTTAACCGGTGGCAGGCTGGAGGAGTTATCAGCATAGAAAGAAGTAATGCAAACCTTGAAGAGCTCAAACACTTACCTCACCTAACCGCATTACAACTACATATCCCAAATGCCAACACTCTTCCACTAGATTTATTCACTGGTTGTAAGTTAGAGAGATTCCAAATATGTATTGGCTCTGTGTGGAAATGGGATGATGTGGATGAAGAGAGCAATGCACTAAAGCTCCAACTCATTGCCAGCAATCAATTTGACCAAGGACTAGAAATGTTGCTAAAGAGAACTGAAGACTTGTACTTGGAGGGTGTTTATAGCAGTATCGTGAATCAACTAGGTGCTGAAGCTTCTCACAAACTGAAGCATCTCCATGTCCAAAACAATGTTGAATTTACCAACTTTTTGTCTATCATAAACGAGAAGGTAGCCGGCGACACAATGTCTCCTACTCACTCCCAAGACTACGCTCCTTACCCTAAGCTCTATCCAAATGACGTCGCTCCACCTCCCCACTCCGAAACCTGGACCTCCGTCTCCATCGCCTCAGAAAAAGACCGAATCACAGTCAGTCCTGTCAGGAGTCAGCGCCGTCCCGAAGATTCATTTCCCAACTTGGAATGGTTGTTCGTGAGAGCAATGGAGCCACTCCCAGCAGTAGCAGCGCAATTGTTTTGCAAAGTAAAGCATCTTGAGGTTTGTTGTCCGGAGTGCAAGTCACTTGTTTTCCTTGACAAATTACTCGACTCAGAAGGAAACAGCAACAGTAGTGCAGCTGGGATTGGGACCCAACACCAGCAGCAGCTCCCACATTTAAAAGAGTTTAGGCTTGTTCGAATGGAGAAGCTGACGCATCTGGGCCAAGATGATGAAGAGGATAACTCACAGTCGGCCCCCGCATCCCAAATTTTCCCAACTTGGAAATTCTATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

574

Amino Acids

65.13

Weight (kDa)

6.69

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 165 - 209 3.6e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1290
AccIII TCCGGA 1 cut(s) 1495
AciI CCGC 3 cut(s) 220, 882, 1686
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 4 cut(s) 653, 1181, 1695, 1712
AcuI CTGAAG 4 cut(s) 462, 1101, 1155, 1172
AcyI GRCGYC 2 cut(s) 67, 1287
AfaI GTAC 1 cut(s) 1091
AfiI CCNNNNNNNGG 3 cut(s) 219, 808, 1314
AflIII ACRYGT 1 cut(s) 689
AgeI ACCGGT 1 cut(s) 801
AgsI TTSAA 8 cut(s) 173, 362, 471, 646, 658, 763, 854, 1181
AhdI GACNNNNNGTC 1 cut(s) 1231
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 1 cut(s) 1313
AloI GAACNNNNNNTCC 2 cut(s) 1400, 1432
Alw21I GWGCWC 3 cut(s) 162, 777, 861
Alw26I GTCTC 2 cut(s) 1239, 1330
AlwI GGATC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 1495
AoxI GGCC 3 cut(s) 249, 1648, 1680
ApeKI GCWGC 6 cut(s) 140, 717, 1451, 1562, 1588, 1591
ApoI RAATTY 4 cut(s) 653, 1181, 1695, 1712
AsiGI ACCGGT 1 cut(s) 801
AspLEI GCGC 2 cut(s) 1380, 1456
AspS9I GGNCC 4 cut(s) 1317, 1575, 1648, 1681
AsuHPI GGTGA 2 cut(s) 732, 866
AsuII TTCGAA 1 cut(s) 1624
AvaII GGWCC 2 cut(s) 1317, 1575
BanII GRGCYC 1 cut(s) 861
BarI GAAGNNNNNNTAC 2 cut(s) 502, 534
BbsI GAAGAC 2 cut(s) 566, 1089
Bbv12I GWGCWC 3 cut(s) 162, 777, 861
BbvI GCAGC 6 cut(s) 127, 704, 1463, 1574, 1600, 1603
BccI CCATC 2 cut(s) 313, 1337
BceAI ACGGC 1 cut(s) 1365
BciT130I CCWGG 1 cut(s) 1315
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 1239, 1330
BfaI CTAG 3 cut(s) 923, 1058, 1127
BfoI RGCGCY 1 cut(s) 1381
BisI GCNGC 6 cut(s) 141, 718, 1452, 1563, 1589, 1592
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 6 cut(s) 142, 719, 1453, 1564, 1590, 1593
Bme1390I CCNGG 1 cut(s) 1315
Bme18I GGWCC 2 cut(s) 1317, 1575
BmeRI GACNNNNNGTC 1 cut(s) 1231
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 4 cut(s) 1317, 1575, 1648, 1681
BmiI GGNNCC 5 cut(s) 101, 1434, 1576, 1577, 1683
BmrFI CCNGG 1 cut(s) 1315
BmsI GCATC 4 cut(s) 1165, 1486, 1651, 1697
BoxI GACNNNNGTC 1 cut(s) 1322
BpiI GAAGAC 2 cut(s) 566, 1089
BplI GAGNNNNNCTC 2 cut(s) 1655, 1687
BpmI CTGGAG 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 1269
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 1624
BpuEI CTTGAG 1 cut(s) 1502
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 67, 1287
BsaJI CCNNGG 1 cut(s) 1051
BsaWI WCCGGW 3 cut(s) 421, 801, 1495
BsaXI ACNNNNNCTCC 6 cut(s) 1005, 1035, 1219, 1249, 1490, 1520
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 808, 1314
Bse118I RCCGGY 2 cut(s) 801, 1220
Bse1I ACTGG 4 cut(s) 59, 360, 718, 940
Bse3DI GCAATG 3 cut(s) 1015, 1029, 1434
Bse8I GATNNNNATC 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 1495
BseBI CCWGG 1 cut(s) 1315
BseDI CCNNGG 1 cut(s) 1051
BseGI GGATG 3 cut(s) 994, 1003, 1688
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 3 cut(s) 219, 808, 1314
BseMI GCAATG 3 cut(s) 1015, 1029, 1434
BseMII CTCAG 3 cut(s) 33, 1350, 1551
BseNI ACTGG 4 cut(s) 59, 360, 718, 940
BseRI GAGGAG 1 cut(s) 831
BseXI GCAGC 6 cut(s) 127, 704, 1463, 1574, 1600, 1603
BseYI CCCAGC 2 cut(s) 1441, 1565
BsgI GTGCAG 1 cut(s) 1581
BshFI GGCC 3 cut(s) 251, 1650, 1682
BshTI ACCGGT 1 cut(s) 801
BsiHKAI GWGCWC 3 cut(s) 162, 777, 861
BsiSI CCGG 4 cut(s) 422, 802, 1221, 1496
BslFI GGGAC 2 cut(s) 1368, 1588
BslI CCNNNNNNNGG 3 cut(s) 219, 808, 1314
BsmAI GTCTC 2 cut(s) 1239, 1330
BsmBI CGTCTC 1 cut(s) 1330
BsmFI GGGAC 2 cut(s) 1368, 1588
BsnI GGCC 3 cut(s) 251, 1650, 1682
Bsp119I TTCGAA 1 cut(s) 1624
Bsp1286I GDGCHC 3 cut(s) 162, 777, 861
Bsp13I TCCGGA 1 cut(s) 1495
Bsp143I GATC 4 cut(s) 237, 285, 373, 492
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 3 cut(s) 220, 882, 1686
BspANI GGCC 3 cut(s) 251, 1650, 1682
BspCNI CTCAG 3 cut(s) 34, 1349, 1550
BspEI TCCGGA 1 cut(s) 1495
BspLI GGNNCC 5 cut(s) 101, 1434, 1576, 1577, 1683
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 1624
BsrDI GCAATG 3 cut(s) 1015, 1029, 1434
BsrFI RCCGGY 2 cut(s) 801, 1220
BsrI ACTGG 4 cut(s) 59, 360, 718, 940
BssAI RCCGGY 2 cut(s) 801, 1220
BssECI CCNNGG 1 cut(s) 1051
BssMI GATC 4 cut(s) 237, 285, 373, 492
BssNI GRCGYC 2 cut(s) 67, 1287
BssT1I CCWWGG 1 cut(s) 1051
Bst2UI CCWGG 1 cut(s) 1315
Bst4CI ACNGT 4 cut(s) 52, 1357, 1556, 1677
Bst6I CTCTTC 5 cut(s) 420, 849, 921, 996, 1656
BstACI GRCGYC 2 cut(s) 67, 1287
BstBI TTCGAA 1 cut(s) 1624
BstC8I GCNNGC 3 cut(s) 810, 1036, 1222
BstDEI CTNAG 9 cut(s) 42, 104, 133, 335, 486, 506, 1269, 1336, 1537
BstF5I GGATG 3 cut(s) 994, 1003, 1688
BstH2I RGCGCY 1 cut(s) 1381
BstHHI GCGC 2 cut(s) 1380, 1456
BstKTI GATC 4 cut(s) 240, 288, 376, 495
BstMAI GTCTC 2 cut(s) 1239, 1330
BstMBI GATC 4 cut(s) 237, 285, 373, 492
BstMWI GCNNNNNNNGC 1 cut(s) 1451
BstNI CCWGG 1 cut(s) 1315
BstPAI GACNNNNGTC 1 cut(s) 1322
BstSCI CCNGG 1 cut(s) 1313
BstV1I GCAGC 6 cut(s) 127, 704, 1463, 1574, 1600, 1603
BstV2I GAAGAC 2 cut(s) 566, 1089
BsuRI GGCC 3 cut(s) 251, 1650, 1682
BtgZI GCGATG 1 cut(s) 1315
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 3 cut(s) 994, 1003, 1688
BtsIMutI CAGTG 1 cut(s) 933
Cac8I GCNNGC 3 cut(s) 810, 1036, 1222
CfoI GCGC 2 cut(s) 1380, 1456
Cfr10I RCCGGY 2 cut(s) 801, 1220
Cfr13I GGNCC 4 cut(s) 1317, 1575, 1648, 1681
CseI GACGC 2 cut(s) 75, 1648
Csp6I GTAC 1 cut(s) 1090
CspAI ACCGGT 1 cut(s) 801
CviAII CATG 2 cut(s) 71, 1163
CviQI GTAC 1 cut(s) 1090
DdeI CTNAG 9 cut(s) 42, 104, 133, 335, 486, 506, 1269, 1336, 1537
DpnI GATC 4 cut(s) 239, 287, 375, 494
DpnII GATC 4 cut(s) 237, 285, 373, 492
DraI TTTAAA 1 cut(s) 1605
DriI GACNNNNNGTC 1 cut(s) 1231
Eam1104I CTCTTC 5 cut(s) 420, 849, 921, 996, 1656
Eam1105I GACNNNNNGTC 1 cut(s) 1231
EarI CTCTTC 5 cut(s) 420, 849, 921, 996, 1656
EciI GGCGGA 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 1051
Eco24I GRGCYC 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 1317, 1575
Eco53kI GAGCTC 1 cut(s) 859
Eco57I CTGAAG 4 cut(s) 462, 1101, 1155, 1172
EcoICRI GAGCTC 1 cut(s) 859
EcoO109I RGGNCCY 1 cut(s) 1575
EcoRII CCWGG 1 cut(s) 1313
EcoT14I CCWWGG 1 cut(s) 1051
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 1051
Esp3I CGTCTC 1 cut(s) 1330
FaeI CATG 2 cut(s) 74, 1166
FaqI GGGAC 2 cut(s) 1368, 1588
FatI CATG 2 cut(s) 70, 1162
FauI CCCGC 1 cut(s) 1693
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 6 cut(s) 141, 718, 1452, 1563, 1589, 1592
FokI GGATG 3 cut(s) 1001, 1010, 1675
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 6 cut(s) 141, 718, 1452, 1563, 1589, 1592
FspBI CTAG 3 cut(s) 923, 1058, 1127
GlaI GCGC 2 cut(s) 1379, 1455
GluI GCNGC 6 cut(s) 141, 718, 1452, 1563, 1589, 1592
GsaI CCCAGC 2 cut(s) 1445, 1569
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 1 cut(s) 1381
HaeIII GGCC 3 cut(s) 251, 1650, 1682
HapII CCGG 4 cut(s) 422, 802, 1221, 1496
HgaI GACGC 2 cut(s) 75, 1648
HhaI GCGC 2 cut(s) 1380, 1456
Hin1I GRCGYC 2 cut(s) 67, 1287
Hin1II CATG 2 cut(s) 74, 1166
Hin6I GCGC 2 cut(s) 1378, 1454
HinP1I GCGC 2 cut(s) 1378, 1454
HindIII AAGCTT 2 cut(s) 757, 1137
HinfI GANTC 7 cut(s) 467, 954, 1120, 1350, 1372, 1391, 1535
HpaII CCGG 4 cut(s) 422, 802, 1221, 1496
HphI GGTGA 2 cut(s) 732, 866
Hpy166II GTNNAC 2 cut(s) 48, 110
Hpy188I TCNGA 3 cut(s) 1309, 1339, 1540
Hpy188III TCNNGA 8 cut(s) 362, 1117, 1369, 1385, 1420, 1481, 1496, 1722
Hpy8I GTNNAC 2 cut(s) 48, 110
Hpy99I CGWCG 1 cut(s) 1292
HpyAV CCTTC 2 cut(s) 1207, 1535
HpyCH4III ACNGT 4 cut(s) 52, 1357, 1556, 1677
HpyCH4IV ACGT 2 cut(s) 691, 1287
HpyCH4V TGCA 8 cut(s) 56, 143, 407, 845, 1013, 1467, 1503, 1562
HpyF10VI GCNNNNNNNGC 1 cut(s) 1451
HpyF3I CTNAG 9 cut(s) 42, 104, 133, 335, 486, 506, 1269, 1336, 1537
HpySE526I ACGT 2 cut(s) 691, 1287
Hsp92I GRCGYC 2 cut(s) 67, 1287
Hsp92II CATG 2 cut(s) 74, 1166
HspAI GCGC 2 cut(s) 1378, 1454
KflI GGGWCCC 1 cut(s) 1575
Kpn2I TCCGGA 1 cut(s) 1495
KroI GCCGGC 1 cut(s) 1220
KroNI GCCGGC 1 cut(s) 1222
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 4 cut(s) 237, 285, 373, 492
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 6 cut(s) 157, 1026, 1264, 1297, 1432, 1599
Lsp1109I GCAGC 6 cut(s) 127, 704, 1463, 1574, 1600, 1603
LweI GCATC 4 cut(s) 1165, 1486, 1651, 1697
MaeI CTAG 3 cut(s) 923, 1058, 1127
MaeII ACGT 2 cut(s) 691, 1287
MaeIII GTNAC 5 cut(s) 124, 208, 415, 592, 1506
MalI GATC 4 cut(s) 239, 287, 375, 494
MboI GATC 4 cut(s) 237, 285, 373, 492
MboII GAAGA 9 cut(s) 185, 437, 571, 866, 908, 1013, 1094, 1400, 1673
MfeI CAATTG 2 cut(s) 214, 1457
MhlI GDGCHC 3 cut(s) 162, 777, 861
MlyI GAGTC 2 cut(s) 1381, 1529
MmeI TCCRAC 2 cut(s) 684, 1048
MroI TCCGGA 1 cut(s) 1495
MroNI GCCGGC 1 cut(s) 1220
MseI TTAA 3 cut(s) 263, 798, 1604
MslI CAYNNNNRTG 1 cut(s) 1161
MspA1I CMGCKG 1 cut(s) 1565
MspI CCGG 4 cut(s) 422, 802, 1221, 1496
MspR9I CCNGG 1 cut(s) 1315
MunI CAATTG 2 cut(s) 214, 1457
MvaI CCWGG 1 cut(s) 1315
MwoI GCNNNNNNNGC 1 cut(s) 1451
NaeI GCCGGC 1 cut(s) 1222
NdeII GATC 4 cut(s) 237, 285, 373, 492
NgoMIV GCCGGC 1 cut(s) 1220
NlaIII CATG 2 cut(s) 74, 1166
NlaIV GGNNCC 5 cut(s) 101, 1434, 1576, 1577, 1683
NmuCI GTSAC 2 cut(s) 592, 1506
NspV TTCGAA 1 cut(s) 1624
PciSI GCTCTTC 1 cut(s) 849
PdiI GCCGGC 1 cut(s) 1222
PfeI GAWTC 5 cut(s) 467, 954, 1120, 1350, 1391
PinAI ACCGGT 1 cut(s) 801
PkrI GCNGC 6 cut(s) 142, 719, 1453, 1564, 1590, 1593
PleI GAGTC 2 cut(s) 1380, 1529
PpsI GAGTC 2 cut(s) 1380, 1529
PpuMI RGGWCCY 1 cut(s) 1575
PshAI GACNNNNGTC 1 cut(s) 1322
Psp124BI GAGCTC 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 1575
Psp6I CCWGG 1 cut(s) 1313
PspFI CCCAGC 2 cut(s) 1441, 1565
PspGI CCWGG 1 cut(s) 1313
PspN4I GGNNCC 5 cut(s) 101, 1434, 1576, 1577, 1683
PspPI GGNCC 4 cut(s) 1317, 1575, 1648, 1681
PspPPI RGGWCCY 1 cut(s) 1575
PvuII CAGCTG 1 cut(s) 1565
RsaI GTAC 1 cut(s) 1091
RsaNI GTAC 1 cut(s) 1090
RseI CAYNNNNRTG 1 cut(s) 1161
SacI GAGCTC 1 cut(s) 861
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 3 cut(s) 263, 798, 1604
SatI GCNGC 6 cut(s) 141, 718, 1452, 1563, 1589, 1592
Sau3AI GATC 4 cut(s) 237, 285, 373, 492
Sau96I GGNCC 4 cut(s) 1317, 1575, 1648, 1681
SchI GAGTC 2 cut(s) 1381, 1529
ScrFI CCNGG 1 cut(s) 1315
SduI GDGCHC 3 cut(s) 162, 777, 861
SfaNI GCATC 4 cut(s) 1165, 1486, 1651, 1697
SfuI TTCGAA 1 cut(s) 1624
SinI GGWCC 2 cut(s) 1317, 1575
SmiMI CAYNNNNRTG 1 cut(s) 1161
SmlI CTYRAG 1 cut(s) 1481
SmoI CTYRAG 1 cut(s) 1481
SsiI CCGC 3 cut(s) 220, 882, 1686
SspI AATATT 1 cut(s) 403
SspMI CTAG 3 cut(s) 923, 1058, 1127
SstI GAGCTC 1 cut(s) 861
StyD4I CCNGG 1 cut(s) 1313
StyI CCWWGG 1 cut(s) 1051
TaaI ACNGT 4 cut(s) 52, 1357, 1556, 1677
TaiI ACGT 2 cut(s) 694, 1290
TaqI TCGA 3 cut(s) 729, 1533, 1624
TaqII GACCGA 1 cut(s) 1362
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 5 cut(s) 467, 954, 1120, 1350, 1391
Tru1I TTAA 3 cut(s) 263, 798, 1604
Tru9I TTAA 3 cut(s) 263, 798, 1604
TscAI CASTG 1 cut(s) 940
TseFI GTSAC 2 cut(s) 592, 1506
TseI GCWGC 6 cut(s) 140, 717, 1451, 1562, 1588, 1591
Tsp45I GTSAC 2 cut(s) 592, 1506
TspDTI ATGAA 5 cut(s) 285, 516, 1014, 1383, 1674
TspGWI ACGGA 1 cut(s) 1312
TspRI CASTG 1 cut(s) 940
VpaK11BI GGWCC 2 cut(s) 1317, 1575
XapI RAATTY 4 cut(s) 653, 1181, 1695, 1712
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XspI CTAG 3 cut(s) 923, 1058, 1127
ZraI GACGTC 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.