disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 163 - 321 | 7.5e-32 | NB-ARC domain |
| AAA_22 | PF13401 | 176 - 264 | 1e-05 | AAA domain |
| LRR_14 | PF23598 | 519 - 834 | 1.6e-10 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 775 - 900 | 2.4e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 861 - 962 | 2.6e-15 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 994 - 1059 | 4.5e-11 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 998 - 1078 | 1.3e-11 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1088 - 1127 | 3.4e-10 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1223 - 1339 | 1.6e-08 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1336 - 1444 | 4.6e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2766, 3896 |
| AarI | CACCTGC | 2 cut(s) | 953, 3498 |
| AatII | GACGTC | 1 cut(s) | 860 |
| Acc36I | ACCTGC | 2 cut(s) | 953, 3498 |
| AccBSI | CCGCTC | 1 cut(s) | 4381 |
| AccI | GTMKAC | 1 cut(s) | 3285 |
| AciI | CCGC | 2 cut(s) | 2073, 4381 |
| AclI | AACGTT | 1 cut(s) | 1296 |
| AclWI | GGATC | 6 cut(s) | 2891, 2912, 2940, 2995, 3876, 4416 |
| AcoI | YGGCCR | 6 cut(s) | 1505, 2461, 2655, 3512, 3746, 4095 |
| AcsI | RAATTY | 8 cut(s) | 666, 1815, 1867, 3931, 3969, 4003, 4033, 4487 |
| AcuI | CTGAAG | 6 cut(s) | 1596, 1901, 2072, 2391, 2822, 4359 |
| AcyI | GRCGYC | 2 cut(s) | 73, 857 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 156, 2410, 2547, 3634 |
| AflII | CTTAAG | 1 cut(s) | 1193 |
| AflIII | ACRYGT | 1 cut(s) | 1465 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 917 |
| AhlI | ACTAGT | 1 cut(s) | 3836 |
| AjiI | CACGTC | 1 cut(s) | 3667 |
| AjnI | CCWGG | 5 cut(s) | 459, 3490, 3743, 3885, 4097 |
| Alw21I | GWGCWC | 3 cut(s) | 33, 1535, 2743 |
| Alw26I | GTCTC | 5 cut(s) | 1096, 2843, 2926, 2933, 3183 |
| Alw44I | GTGCAC | 2 cut(s) | 1531, 2739 |
| AlwI | GGATC | 6 cut(s) | 2891, 2912, 2940, 2995, 3876, 4416 |
| Ama87I | CYCGRG | 2 cut(s) | 472, 2936 |
| AoxI | GGCC | 9 cut(s) | 462, 1505, 2461, 2655, 3512, 3746, 3799, 3947, 4095 |
| ApaLI | GTGCAC | 2 cut(s) | 1531, 2739 |
| ApeKI | GCWGC | 7 cut(s) | 146, 163, 226, 1001, 2251, 3752, 4311 |
| ApoI | RAATTY | 8 cut(s) | 666, 1815, 1867, 3931, 3969, 4003, 4033, 4487 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1741, 1773 |
| AseI | ATTAAT | 1 cut(s) | 1398 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2399, 2955, 3499 |
| AspA2I | CCTAGG | 1 cut(s) | 2900 |
| AspS9I | GGNCC | 4 cut(s) | 1849, 3407, 3800, 3947 |
| AsuC2I | CCSGG | 1 cut(s) | 2065 |
| AsuHPI | GGTGA | 5 cut(s) | 1265, 1888, 1917, 2168, 3037 |
| AsuII | TTCGAA | 1 cut(s) | 1747 |
| AsuNHI | GCTAGC | 2 cut(s) | 2036, 2438 |
| AvaI | CYCGRG | 2 cut(s) | 472, 2936 |
| AvaII | GGWCC | 2 cut(s) | 1849, 3407 |
| AvrII | CCTAGG | 1 cut(s) | 2900 |
| AxyI | CCTNAGG | 1 cut(s) | 3568 |
| BaeGI | GKGCMC | 2 cut(s) | 1535, 2743 |
| BalI | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| BanII | GRGCYC | 1 cut(s) | 33 |
| BbsI | GAAGAC | 2 cut(s) | 569, 805 |
| Bbv12I | GWGCWC | 3 cut(s) | 33, 1535, 2743 |
| BbvCI | CCTCAGC | 2 cut(s) | 2255, 3353 |
| BbvI | GCAGC | 7 cut(s) | 133, 175, 213, 1013, 2238, 3739, 4298 |
| BceAI | ACGGC | 1 cut(s) | 1183 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4163, 4197 |
| BciT130I | CCWGG | 5 cut(s) | 461, 3492, 3745, 3887, 4099 |
| BciVI | GTATCC | 1 cut(s) | 1139 |
| BclI | TGATCA | 1 cut(s) | 243 |
| BcnI | CCSGG | 1 cut(s) | 2065 |
| BcoDI | GTCTC | 5 cut(s) | 1096, 2843, 2926, 2933, 3183 |
| BcuI | ACTAGT | 1 cut(s) | 3836 |
| BfmI | CTRYAG | 4 cut(s) | 720, 2492, 2780, 2786 |
| BfrI | CTTAAG | 1 cut(s) | 1193 |
| BfuAI | ACCTGC | 2 cut(s) | 953, 3498 |
| BfuI | GTATCC | 1 cut(s) | 1139 |
| BglII | AGATCT | 4 cut(s) | 1832, 3463, 3526, 3558 |
| BisI | GCNGC | 7 cut(s) | 147, 164, 227, 1002, 2252, 3753, 4312 |
| BlnI | CCTAGG | 1 cut(s) | 2900 |
| BlsI | GCNGC | 7 cut(s) | 148, 165, 228, 1003, 2253, 3754, 4313 |
| BmcAI | AGTACT | 2 cut(s) | 633, 1075 |
| Bme1390I | CCNGG | 6 cut(s) | 461, 2065, 3492, 3745, 3887, 4099 |
| Bme18I | GGWCC | 2 cut(s) | 1849, 3407 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 917 |
| BmeT110I | CYCGRG | 2 cut(s) | 472, 2936 |
| BmgBI | CACGTC | 1 cut(s) | 3667 |
| BmgT120I | GGNCC | 4 cut(s) | 1849, 3407, 3800, 3947 |
| BmiI | GGNNCC | 3 cut(s) | 1851, 2141, 3862 |
| BmrFI | CCNGG | 6 cut(s) | 461, 2065, 3492, 3745, 3887, 4099 |
| BmtI | GCTAGC | 2 cut(s) | 2040, 2442 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2238 |
| BpiI | GAAGAC | 2 cut(s) | 569, 805 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3453, 3485 |
| BpmI | CTGGAG | 4 cut(s) | 1178, 2900, 3036, 3908 |
| Bpu10I | CCTNAGC | 5 cut(s) | 2255, 2818, 3353, 3476, 3615 |
| Bpu14I | TTCGAA | 1 cut(s) | 1747 |
| BpuEI | CTTGAG | 9 cut(s) | 411, 943, 1120, 1661, 2192, 2705, 3455, 3614, 4126 |
| BpuMI | CCSGG | 1 cut(s) | 2065 |
| Bsa29I | ATCGAT | 2 cut(s) | 1712, 3291 |
| BsaBI | GATNNNNATC | 1 cut(s) | 642 |
| BsaHI | GRCGYC | 2 cut(s) | 73, 857 |
| BsaI | GGTCTC | 2 cut(s) | 2926, 3183 |
| BsaJI | CCNNGG | 5 cut(s) | 1583, 2844, 2900, 3490, 3885 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2568, 2598, 4318, 4348 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 156, 2410, 2547, 3634 |
| Bse118I | RCCGGY | 1 cut(s) | 4206 |
| Bse1I | ACTGG | 7 cut(s) | 1341, 1699, 1899, 2694, 2883, 4074, 4312 |
| Bse21I | CCTNAGG | 1 cut(s) | 3568 |
| Bse3DI | GCAATG | 4 cut(s) | 1438, 2852, 3393, 3702 |
| Bse8I | GATNNNNATC | 1 cut(s) | 642 |
| BseBI | CCWGG | 5 cut(s) | 461, 3492, 3745, 3887, 4099 |
| BseCI | ATCGAT | 2 cut(s) | 1712, 3291 |
| BseDI | CCNNGG | 5 cut(s) | 1583, 2844, 2900, 3490, 3885 |
| BseJI | GATNNNNATC | 1 cut(s) | 642 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 156, 2410, 2547, 3634 |
| BseMI | GCAATG | 4 cut(s) | 1438, 2852, 3393, 3702 |
| BseNI | ACTGG | 7 cut(s) | 1341, 1699, 1899, 2694, 2883, 4074, 4312 |
| BseRI | GAGGAG | 2 cut(s) | 1202, 2272 |
| BseSI | GKGCMC | 2 cut(s) | 1535, 2743 |
| BseXI | GCAGC | 7 cut(s) | 133, 175, 213, 1013, 2238, 3739, 4298 |
| BseYI | CCCAGC | 2 cut(s) | 3691, 3864 |
| BsgI | GTGCAG | 1 cut(s) | 3789 |
| BshFI | GGCC | 9 cut(s) | 464, 1507, 2463, 2657, 3514, 3748, 3801, 3949, 4097 |
| BshVI | ATCGAT | 2 cut(s) | 1712, 3291 |
| BsiHKAI | GWGCWC | 3 cut(s) | 33, 1535, 2743 |
| BsiHKCI | CYCGRG | 2 cut(s) | 472, 2936 |
| BsiSI | CCGG | 2 cut(s) | 2065, 4207 |
| BsiWI | CGTACG | 1 cut(s) | 1426 |
| BslFI | GGGAC | 5 cut(s) | 1835, 2047, 2563, 2991, 3615 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 156, 2410, 2547, 3634 |
| BsmAI | GTCTC | 5 cut(s) | 1096, 2843, 2926, 2933, 3183 |
| BsmBI | CGTCTC | 1 cut(s) | 1096 |
| BsmFI | GGGAC | 5 cut(s) | 1835, 2047, 2563, 2991, 3615 |
| BsmI | GAATGC | 8 cut(s) | 441, 1327, 1330, 1419, 2401, 3499, 3501, 3906 |
| BsnI | GGCC | 9 cut(s) | 464, 1507, 2463, 2657, 3514, 3748, 3801, 3949, 4097 |
| Bso31I | GGTCTC | 2 cut(s) | 2926, 3183 |
| BsoBI | CYCGRG | 2 cut(s) | 472, 2936 |
| Bsp119I | TTCGAA | 1 cut(s) | 1747 |
| Bsp1286I | GDGCHC | 3 cut(s) | 33, 1535, 2743 |
| BspACI | CCGC | 2 cut(s) | 2073, 4381 |
| BspANI | GGCC | 9 cut(s) | 464, 1507, 2463, 2657, 3514, 3748, 3801, 3949, 4097 |
| BspDI | ATCGAT | 2 cut(s) | 1712, 3291 |
| BspHI | TCATGA | 1 cut(s) | 2706 |
| BspLI | GGNNCC | 3 cut(s) | 1851, 2141, 3862 |
| BspMI | ACCTGC | 2 cut(s) | 953, 3498 |
| BspOI | GCTAGC | 2 cut(s) | 2040, 2442 |
| BspPI | GGATC | 6 cut(s) | 2891, 2912, 2940, 2995, 3876, 4416 |
| BspQI | GCTCTTC | 2 cut(s) | 724, 2048 |
| BspT104I | TTCGAA | 1 cut(s) | 1747 |
| BspTI | CTTAAG | 1 cut(s) | 1193 |
| BspTNI | GGTCTC | 2 cut(s) | 2926, 3183 |
| BsrBI | CCGCTC | 1 cut(s) | 4381 |
| BsrDI | GCAATG | 4 cut(s) | 1438, 2852, 3393, 3702 |
| BsrFI | RCCGGY | 1 cut(s) | 4206 |
| BsrI | ACTGG | 7 cut(s) | 1341, 1699, 1899, 2694, 2883, 4074, 4312 |
| BssAI | RCCGGY | 1 cut(s) | 4206 |
| BssECI | CCNNGG | 5 cut(s) | 1583, 2844, 2900, 3490, 3885 |
| BssNI | GRCGYC | 2 cut(s) | 73, 857 |
| BssT1I | CCWWGG | 3 cut(s) | 1583, 2844, 2900 |
| Bst2UI | CCWGG | 5 cut(s) | 461, 3492, 3745, 3887, 4099 |
| Bst6I | CTCTTC | 8 cut(s) | 267, 724, 1179, 1656, 1731, 2048, 4379, 4385 |
| BstACI | GRCGYC | 2 cut(s) | 73, 857 |
| BstAFI | CTTAAG | 1 cut(s) | 1193 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1322 |
| BstBI | TTCGAA | 1 cut(s) | 1747 |
| BstC8I | GCNNGC | 5 cut(s) | 1634, 2038, 2440, 3750, 4057 |
| BstMAI | GTCTC | 5 cut(s) | 1096, 2843, 2926, 2933, 3183 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 362, 731, 1010, 1322, 3358 |
| BstNI | CCWGG | 5 cut(s) | 461, 3492, 3745, 3887, 4099 |
| BstNSI | RCATGY | 3 cut(s) | 738, 1469, 3854 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2238 |
| BstSCI | CCNGG | 6 cut(s) | 459, 2063, 3490, 3743, 3885, 4097 |
| BstSFI | CTRYAG | 4 cut(s) | 720, 2492, 2780, 2786 |
| BstSLI | GKGCMC | 2 cut(s) | 1535, 2743 |
| BstV1I | GCAGC | 7 cut(s) | 133, 175, 213, 1013, 2238, 3739, 4298 |
| BstV2I | GAAGAC | 2 cut(s) | 569, 805 |
| BstX2I | RGATCY | 6 cut(s) | 1832, 2932, 3463, 3526, 3558, 3881 |
| BstYI | RGATCY | 6 cut(s) | 1832, 2932, 3463, 3526, 3558, 3881 |
| Bsu15I | ATCGAT | 2 cut(s) | 1712, 3291 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3568 |
| BsuI | GTATCC | 1 cut(s) | 1139 |
| BsuRI | GGCC | 9 cut(s) | 464, 1507, 2463, 2657, 3514, 3748, 3801, 3949, 4097 |
| BsuTUI | ATCGAT | 2 cut(s) | 1712, 3291 |
| BtrI | CACGTC | 1 cut(s) | 3667 |
| BtsI | GCAGTG | 1 cut(s) | 4276 |
| BtsIMutI | CAGTG | 7 cut(s) | 253, 1311, 1334, 1751, 2504, 4043, 4276 |
| BveI | ACCTGC | 2 cut(s) | 953, 3498 |
| Cac8I | GCNNGC | 5 cut(s) | 1634, 2038, 2440, 3750, 4057 |
| CciI | TCATGA | 1 cut(s) | 2706 |
| Cfr10I | RCCGGY | 1 cut(s) | 4206 |
| Cfr13I | GGNCC | 4 cut(s) | 1849, 3407, 3800, 3947 |
| ClaI | ATCGAT | 2 cut(s) | 1712, 3291 |
| CseI | GACGC | 1 cut(s) | 81 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2100, 2135 |
| DraI | TTTAAA | 1 cut(s) | 4425 |
| DriI | GACNNNNNGTC | 1 cut(s) | 917 |
| EaeI | YGGCCR | 6 cut(s) | 1505, 2461, 2655, 3512, 3746, 4095 |
| Eam1104I | CTCTTC | 8 cut(s) | 267, 724, 1179, 1656, 1731, 2048, 4379, 4385 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 917 |
| EarI | CTCTTC | 8 cut(s) | 267, 724, 1179, 1656, 1731, 2048, 4379, 4385 |
| Ecl136II | GAGCTC | 1 cut(s) | 31 |
| Eco130I | CCWWGG | 3 cut(s) | 1583, 2844, 2900 |
| Eco24I | GRGCYC | 1 cut(s) | 33 |
| Eco31I | GGTCTC | 2 cut(s) | 2926, 3183 |
| Eco32I | GATATC | 2 cut(s) | 703, 2691 |
| Eco47I | GGWCC | 2 cut(s) | 1849, 3407 |
| Eco53kI | GAGCTC | 1 cut(s) | 31 |
| Eco57I | CTGAAG | 6 cut(s) | 1596, 1901, 2072, 2391, 2822, 4359 |
| Eco81I | CCTNAGG | 1 cut(s) | 3568 |
| Eco88I | CYCGRG | 2 cut(s) | 472, 2936 |
| EcoICRI | GAGCTC | 1 cut(s) | 31 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1849, 3407 |
| EcoRI | GAATTC | 2 cut(s) | 666, 3931 |
| EcoRII | CCWGG | 5 cut(s) | 459, 3490, 3743, 3885, 4097 |
| EcoRV | GATATC | 2 cut(s) | 703, 2691 |
| EcoT14I | CCWWGG | 3 cut(s) | 1583, 2844, 2900 |
| EcoT22I | ATGCAT | 5 cut(s) | 894, 1087, 1419, 3501, 3918 |
| EcoT38I | GRGCYC | 1 cut(s) | 33 |
| ErhI | CCWWGG | 3 cut(s) | 1583, 2844, 2900 |
| Esp3I | CGTCTC | 1 cut(s) | 1096 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1176, 1208 |
| FaqI | GGGAC | 5 cut(s) | 1835, 2047, 2563, 2991, 3615 |
| FbaI | TGATCA | 1 cut(s) | 243 |
| FblI | GTMKAC | 1 cut(s) | 3285 |
| Fnu4HI | GCNGC | 7 cut(s) | 147, 164, 227, 1002, 2252, 3753, 4312 |
| FriOI | GRGCYC | 1 cut(s) | 33 |
| Fsp4HI | GCNGC | 7 cut(s) | 147, 164, 227, 1002, 2252, 3753, 4312 |
| GluI | GCNGC | 7 cut(s) | 147, 164, 227, 1002, 2252, 3753, 4312 |
| GsaI | CCCAGC | 2 cut(s) | 3695, 3868 |
| GsuI | CTGGAG | 4 cut(s) | 1178, 2900, 3036, 3908 |
| HaeIII | GGCC | 9 cut(s) | 464, 1507, 2463, 2657, 3514, 3748, 3801, 3949, 4097 |
| HapII | CCGG | 2 cut(s) | 2065, 4207 |
| HgaI | GACGC | 1 cut(s) | 81 |
| Hin1I | GRCGYC | 2 cut(s) | 73, 857 |
| HincII | GTYRAC | 5 cut(s) | 855, 1300, 3082, 4276, 4326 |
| HindII | GTYRAC | 5 cut(s) | 855, 1300, 3082, 4276, 4326 |
| HindIII | AAGCTT | 6 cut(s) | 813, 1942, 1959, 2522, 2986, 3785 |
| HpaI | GTTAAC | 1 cut(s) | 3082 |
| HpaII | CCGG | 2 cut(s) | 2065, 4207 |
| HphI | GGTGA | 5 cut(s) | 1265, 1888, 1917, 2168, 3037 |
| HpyCH4IV | ACGT | 4 cut(s) | 857, 1296, 3279, 3666 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 362, 731, 1010, 1322, 3358 |
| HpySE526I | ACGT | 4 cut(s) | 857, 1296, 3279, 3666 |
| Hsp92I | GRCGYC | 2 cut(s) | 73, 857 |
| Ksp22I | TGATCA | 1 cut(s) | 243 |
| KspAI | GTTAAC | 1 cut(s) | 3082 |
| LguI | GCTCTTC | 2 cut(s) | 724, 2048 |
| LmnI | GCTCC | 5 cut(s) | 1189, 3055, 3873, 3889, 3925 |
| Lsp1109I | GCAGC | 7 cut(s) | 133, 175, 213, 1013, 2238, 3739, 4298 |
| MaeII | ACGT | 4 cut(s) | 857, 1296, 3279, 3666 |
| MaeIII | GTNAC | 8 cut(s) | 746, 1045, 1166, 2374, 2415, 2560, 3025, 3442 |
| MbiI | CCGCTC | 1 cut(s) | 4381 |
| MfeI | CAATTG | 2 cut(s) | 66, 3855 |
| MflI | RGATCY | 6 cut(s) | 1832, 2932, 3463, 3526, 3558, 3881 |
| MhlI | GDGCHC | 3 cut(s) | 33, 1535, 2743 |
| MlsI | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| MluNI | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| MlyI | GAGTC | 6 cut(s) | 464, 1692, 1867, 2423, 2521, 3063 |
| MmeI | TCCRAC | 7 cut(s) | 1158, 1665, 1774, 1869, 2211, 2616, 3181 |
| Mox20I | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| Mph1103I | ATGCAT | 5 cut(s) | 894, 1087, 1419, 3501, 3918 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2399, 2955, 3499 |
| MscI | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| MslI | CAYNNNNRTG | 7 cut(s) | 744, 1565, 2167, 2352, 2619, 3017, 3911 |
| Msp20I | TGGCCA | 6 cut(s) | 1507, 2463, 2657, 3514, 3748, 4097 |
| MspA1I | CMGCKG | 2 cut(s) | 3352, 3752 |
| MspCI | CTTAAG | 1 cut(s) | 1193 |
| MspI | CCGG | 2 cut(s) | 2065, 4207 |
| MspR9I | CCNGG | 6 cut(s) | 461, 2065, 3492, 3745, 3887, 4099 |
| MunI | CAATTG | 2 cut(s) | 66, 3855 |
| Mva1269I | GAATGC | 8 cut(s) | 441, 1327, 1330, 1419, 2401, 3499, 3501, 3906 |
| MvaI | CCWGG | 5 cut(s) | 461, 3492, 3745, 3887, 4099 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 362, 731, 1010, 1322, 3358 |
| NciI | CCSGG | 1 cut(s) | 2065 |
| NheI | GCTAGC | 2 cut(s) | 2036, 2438 |
| NlaIV | GGNNCC | 3 cut(s) | 1851, 2141, 3862 |
| NmuCI | GTSAC | 3 cut(s) | 746, 2415, 3025 |
| NsiI | ATGCAT | 5 cut(s) | 894, 1087, 1419, 3501, 3918 |
| NspI | RCATGY | 3 cut(s) | 738, 1469, 3854 |
| NspV | TTCGAA | 1 cut(s) | 1747 |
| PaeR7I | CTCGAG | 2 cut(s) | 472, 2936 |
| PagI | TCATGA | 1 cut(s) | 2706 |
| PaqCI | CACCTGC | 2 cut(s) | 953, 3498 |
| PciI | ACATGT | 1 cut(s) | 1465 |
| PciSI | GCTCTTC | 2 cut(s) | 724, 2048 |
| PctI | GAATGC | 8 cut(s) | 441, 1327, 1330, 1419, 2401, 3499, 3501, 3906 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2399, 2955, 3499 |
| Pfl23II | CGTACG | 1 cut(s) | 1426 |
| PkrI | GCNGC | 7 cut(s) | 148, 165, 228, 1003, 2253, 3754, 4313 |
| PleI | GAGTC | 6 cut(s) | 464, 1692, 1867, 2422, 2520, 3063 |
| PpsI | GAGTC | 6 cut(s) | 464, 1692, 1867, 2422, 2520, 3063 |
| PpuMI | RGGWCCY | 2 cut(s) | 1849, 3407 |
| PscI | ACATGT | 1 cut(s) | 1465 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2238 |
| PshBI | ATTAAT | 1 cut(s) | 1398 |
| PsiI | TTATAA | 2 cut(s) | 2766, 3896 |
| Psp124BI | GAGCTC | 1 cut(s) | 33 |
| Psp1406I | AACGTT | 1 cut(s) | 1296 |
| Psp5II | RGGWCCY | 2 cut(s) | 1849, 3407 |
| Psp6I | CCWGG | 5 cut(s) | 459, 3490, 3743, 3885, 4097 |
| PspFI | CCCAGC | 2 cut(s) | 3691, 3864 |
| PspGI | CCWGG | 5 cut(s) | 459, 3490, 3743, 3885, 4097 |
| PspLI | CGTACG | 1 cut(s) | 1426 |
| PspN4I | GGNNCC | 3 cut(s) | 1851, 2141, 3862 |
| PspPI | GGNCC | 4 cut(s) | 1849, 3407, 3800, 3947 |
| PspPPI | RGGWCCY | 2 cut(s) | 1849, 3407 |
| PspXI | VCTCGAGB | 1 cut(s) | 472 |
| PsuI | RGATCY | 6 cut(s) | 1832, 2932, 3463, 3526, 3558, 3881 |
| PvuII | CAGCTG | 2 cut(s) | 3352, 3752 |
| RseI | CAYNNNNRTG | 7 cut(s) | 744, 1565, 2167, 2352, 2619, 3017, 3911 |
| SacI | GAGCTC | 1 cut(s) | 33 |
| SapI | GCTCTTC | 2 cut(s) | 724, 2048 |
| SatI | GCNGC | 7 cut(s) | 147, 164, 227, 1002, 2252, 3753, 4312 |
| Sau96I | GGNCC | 4 cut(s) | 1849, 3407, 3800, 3947 |
| ScaI | AGTACT | 2 cut(s) | 633, 1075 |
| SchI | GAGTC | 6 cut(s) | 464, 1692, 1867, 2423, 2521, 3063 |
| ScrFI | CCNGG | 6 cut(s) | 461, 2065, 3492, 3745, 3887, 4099 |
| SduI | GDGCHC | 3 cut(s) | 33, 1535, 2743 |
| SfcI | CTRYAG | 4 cut(s) | 720, 2492, 2780, 2786 |
| Sfr274I | CTCGAG | 2 cut(s) | 472, 2936 |
| SfuI | TTCGAA | 1 cut(s) | 1747 |
| SinI | GGWCC | 2 cut(s) | 1849, 3407 |
| SlaI | CTCGAG | 2 cut(s) | 472, 2936 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 744, 1565, 2167, 2352, 2619, 3017, 3911 |
| SpeI | ACTAGT | 1 cut(s) | 3836 |
| SsiI | CCGC | 2 cut(s) | 2073, 4381 |
| SspI | AATATT | 7 cut(s) | 1243, 2867, 3255, 3816, 4076, 4430, 4465 |
| SstI | GAGCTC | 1 cut(s) | 33 |
| StyD4I | CCNGG | 6 cut(s) | 459, 2063, 3490, 3743, 3885, 4097 |
| StyI | CCWWGG | 3 cut(s) | 1583, 2844, 2900 |
| TaiI | ACGT | 4 cut(s) | 860, 1299, 3282, 3669 |
| TaqI | TCGA | 9 cut(s) | 127, 473, 868, 910, 1594, 1712, 1747, 2937, 3291 |
| TaqII | GACCGA | 2 cut(s) | 3165, 3234 |
| TatI | WGTACW | 4 cut(s) | 631, 1073, 1915, 4345 |
| TscAI | CASTG | 7 cut(s) | 253, 1311, 1341, 1758, 2511, 4050, 4276 |
| TseFI | GTSAC | 3 cut(s) | 746, 2415, 3025 |
| TseI | GCWGC | 7 cut(s) | 146, 163, 226, 1001, 2251, 3752, 4311 |
| Tsp45I | GTSAC | 3 cut(s) | 746, 2415, 3025 |
| TspGWI | ACGGA | 1 cut(s) | 1006 |
| TspRI | CASTG | 7 cut(s) | 253, 1311, 1341, 1758, 2511, 4050, 4276 |
| Vha464I | CTTAAG | 1 cut(s) | 1193 |
| VneI | GTGCAC | 2 cut(s) | 1531, 2739 |
| VpaK11BI | GGWCC | 2 cut(s) | 1849, 3407 |
| VspI | ATTAAT | 1 cut(s) | 1398 |
| XapI | RAATTY | 8 cut(s) | 666, 1815, 1867, 3931, 3969, 4003, 4033, 4487 |
| XbaI | TCTAGA | 4 cut(s) | 860, 1759, 3148, 3973 |
| XceI | RCATGY | 3 cut(s) | 738, 1469, 3854 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2150 |
| XhoI | CTCGAG | 2 cut(s) | 472, 2936 |
| XmaJI | CCTAGG | 1 cut(s) | 2900 |
| XmiI | GTMKAC | 1 cut(s) | 3285 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2399, 2955, 3499 |
| ZraI | GACGTC | 1 cut(s) | 858 |
| ZrmI | AGTACT | 2 cut(s) | 633, 1075 |
| Zsp2I | ATGCAT | 5 cut(s) | 894, 1087, 1419, 3501, 3918 |