Rroxscaffold_5G00342390

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000042
Physical Location & Seq
Forward (+)
11301922 .. 11305939
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342390.1

Sequence Viewer

Length: 2406 bp
ATGGCTAGAAGTCTTGTACAACTCACACATCTTGAGGTATCTAGATGTCAAACCATGGAAGAAATAGTATCAACAGATGAATCTGATGAAAAGCATATGAATGACATATTCTCTAAGCTACAACATCTGAAGCTAAAAGATCTTCCAATCCTCACAAGATTCTGCTCAAGAAGTTATAGTGGAATTCCATCTTTGGATATTTCGCAACTAAAGAACAACAATGAAATTGAAGAAATGGACTCAAGAGAAAACCTTGGGAATGCTTTCTTTGACAAAAAGGTATTATTTCCAAGCTTGAAGGGATTGTTCATCAATGGCTTGACCAAGTTAATAACATTATGGCACAGCCAACTTTCTCCAGAGAGTTTCAAAAATCTAGAGACCGTAGACATTTGCTCATGTCAGAGTTTGAAAAGTGTTTTCCCATCCACAATAGTCAGACGTCTGCAGCAGTTAGTGCATCTGAAAGTGGTCAATTGCGGAGTAGAGGAAATAGTTGCAAATGAAGACGGACTACAAACAACAGATGAGTTTGTGTTCTCAAAAGTAGAATCTGTTAGATTTGAGGGTTTGCCCCATCTGAGGTGTTTCTATCCCAGAATGCATGCTTCCAGGTGGCCATCGCTTGAAGATTTGATGGTATTTGGTTGTTGTAAAGTGGCATTTTTAGCCCAGGAATATTGTTCAAGCTTTGAGAGAAACTATGAGTCGACGAATCCTACTCCAACTAGCCAAGCTCTCTTTCTAATTAAGAAGGAATCATTCCCCAACTTGAAACTAGTCAAAGTCCTGGACATGGACATTTGGGATGGTCCAATCCCAGTAAAGTTCTTTAGCAAACTAGAATCTCTTCAAGTAAGGAATCAGCACTCCAAGTCAGCTGTGGTTGAGAAATTCCTTGATCTCGAAAAATCAAGTGTGACGAGTTTTGCTGCTTCCAATGAAATATCTTTCCATGAAAAAAGCCGTAGTAGGGATATAAATGTAGTTGGGGCCCTCCCTAATTTAAGTACGTTGCGGCTTTATGGCATGTCGAAGCTGATGCATCTATGGGAAGACGACACCCAATCAGCAGGCCAAAATTTTCCAAACCTGAAATCTCTCGTAATAAATATCTGTGATAGCCTAAGGAATCTAAGATCATCAGCGATATCCTTCCAAAATCTGACAAACTTGGAAGTGACTGATTGTCCGGGATTGGAATACTTGATAAATTACTCCACAGCTAAAAGTTTCATGCAACTCAAAGTCCTATCAGTTGAGGATTGTGCAAGATTGGTAGGAATAGTGGGAAGCACAGAAGATGACGATTCAGGAAATGAGATTGTAACAAAGGAAAAGGTCGACATGGATACTGGTGCTGGTAGTGAACAAATTGATGAAACTACACAGATAACAAACAAAAACGAAGACGCAAACGTCGATGGATCGGAACATGTTCAGCCCCTTGAGACCACTGCGACTGATGAGGGGGTCATAGCACCAGTGGAAGAAAATCTGGCCATCATACCAGTAGGTGAAGCCACAACTCCTGTGTTCCCAGTCGTCGAGTCTGCTCCTGTCGCCGAAGTACCTCATACTGAAGAAGTTGGGGAACAAGCATTCTCAGGCCAGAACCTAGAGCCTCTAGCTGAACAAGCAAAGCCTGATTGTCATCAAACTCCCAATGCACGAGAGCAGCCCGTTGAGGAACAAAGTGATCCCTTGGAGCCTTCAGCTGCTGCTACAGGAACTCCGACACCTACCATTCCTGCACTGCCTCCTCCAAGTTCTCCGAAGTCATCTGGGATGAAACGATCCTTGAGAGAGAAACTTCAAGCTCTGTCTGCCAAAAAGGCTGGTAGCAGTTCCAGCTTGCCCGAGGAGGAGAAGGCCAAGCTCAAAGCTCTTAATGCTACTGCAGACTTGAAAGACCCCCACACCAGACAACAGCTCTTGGCAATGCTGCCCACTCTCCAACTGTCTACTACCAAATGGATTGCTGATCTCGCTGTTCAAGAGCTATCGAAGTTACCACTGGTTCTGGACAAGGAGGAATCATTATGCCAAGAATTGGCTGCTCTTAAAGCTCAGGGCTCCGAGCTTGATGTAAGGAGTCACATACTCCTCTGTGAAGGTTCCTTAGCTGAAGAAAACATCCAGAAGGTTCAGAAGCAGAAGATGGTGCTTCTGGCTCTGGAAGAGCAAATCAAGAAGCTTGAGGCGCGAGCATCTTCAATCCGGGCTGAGATCACCCTTGGCGAAAAGAGGTATTCTGGTTTTGAAGCGTCCTTGGATCAGCTAGTTGAGGAACAGCAACTCAACCAACTCTCTGTGGATTCAACAAGCCAAGAGTTGCTTAGGACTCAAGCTGAGAATGACAGCTTATGTATTTCCATTGTCACTTATCTCCGCCAGCTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

801

Amino Acids

88.94

Weight (kDa)

4.96

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 1 - 65 6.9e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 65 - 161 2.6e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 259 - 380 4.6e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 383 - 424 3.1e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1418
AatII GACGTC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 2053
AccI GTMKAC 4 cut(s) 387, 710, 1344, 1964
AccII CGCG 1 cut(s) 2206
AciI CCGC 3 cut(s) 480, 1018, 2392
AclWI GGATC 4 cut(s) 1435, 1694, 1791, 2283
AcoI YGGCCR 2 cut(s) 617, 1500
AcsI RAATTY 3 cut(s) 183, 893, 1081
AcuI CTGAAG 4 cut(s) 149, 1602, 1698, 2148
AcyI GRCGYC 1 cut(s) 442
AfaI GTAC 3 cut(s) 18, 1012, 1572
AfiI CCNNNNNNNGG 4 cut(s) 582, 796, 973, 2053
AflIII ACRYGT 1 cut(s) 1435
AhdI GACNNNNNGTC 1 cut(s) 1188
AhlI ACTAGT 1 cut(s) 778
AjnI CCWGG 3 cut(s) 611, 672, 789
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
Alw26I GTCTC 2 cut(s) 374, 1445
AlwI GGATC 4 cut(s) 1435, 1694, 1791, 2283
AlwNI CAGNNNCTG 1 cut(s) 1721
Ama87I CYCGRG 1 cut(s) 1859
AoxI GGCC 6 cut(s) 617, 993, 1075, 1500, 1609, 1872
ApaI GGGCCC 1 cut(s) 997
ApeKI GCWGC 7 cut(s) 448, 932, 1678, 1718, 1721, 1945, 2057
ApoI RAATTY 3 cut(s) 183, 893, 1081
Asp700I GAANNNNTTC 3 cut(s) 263, 849, 1437
AspLEI GCGC 1 cut(s) 2206
AspS9I GGNCC 3 cut(s) 812, 993, 994
AsuC2I CCSGG 2 cut(s) 1194, 2222
AsuHPI GGTGA 2 cut(s) 1529, 2224
AvaI CYCGRG 1 cut(s) 1859
AvaII GGWCC 1 cut(s) 812
AxyI CCTNAGG 1 cut(s) 1127
BaeGI GKGCMC 1 cut(s) 997
BalI TGGCCA 2 cut(s) 619, 1502
BanII GRGCYC 2 cut(s) 997, 2078
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BauI CACGAG 1 cut(s) 1671
BbsI GAAGAC 3 cut(s) 513, 1062, 1416
BbvI GCAGC 7 cut(s) 460, 919, 1690, 1705, 1708, 1932, 2044
BccI CCATC 9 cut(s) 196, 433, 585, 628, 631, 803, 1418, 1511, 2155
BceAI ACGGC 1 cut(s) 951
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BciT130I CCWGG 3 cut(s) 613, 674, 791
BciVI GTATCC 1 cut(s) 1345
BcnI CCSGG 2 cut(s) 1194, 2222
BcoDI GTCTC 2 cut(s) 374, 1445
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 9 cut(s) 6, 42, 377, 729, 779, 842, 1619, 1628, 2282
BfmI CTRYAG 3 cut(s) 446, 1725, 1899
BfuI GTATCC 1 cut(s) 1345
BglI GCCNNNNNGGC 1 cut(s) 1835
BglII AGATCT 1 cut(s) 139
BisI GCNGC 8 cut(s) 449, 933, 1019, 1679, 1719, 1722, 1946, 2058
BlsI GCNGC 8 cut(s) 450, 934, 1020, 1680, 1720, 1723, 1947, 2059
Bme1390I CCNGG 5 cut(s) 613, 674, 791, 1194, 2222
Bme18I GGWCC 1 cut(s) 812
BmeRI GACNNNNNGTC 1 cut(s) 1188
BmeT110I CYCGRG 1 cut(s) 1859
BmgT120I GGNCC 3 cut(s) 812, 993, 994
BmiI GGNNCC 5 cut(s) 994, 995, 1710, 2077, 2119
BmrFI CCNGG 5 cut(s) 613, 674, 791, 1194, 2222
BmrI ACTGGG 2 cut(s) 815, 1535
BmsI GCATC 4 cut(s) 469, 1032, 1054, 2219
BmuI ACTGGG 2 cut(s) 815, 1535
BpiI GAAGAC 3 cut(s) 513, 1062, 1416
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 3 cut(s) 2070, 2122, 2339
BpuEI CTTGAG 7 cut(s) 53, 151, 226, 1469, 1822, 2219, 2331
BpuMI CCSGG 2 cut(s) 1194, 2222
BsaBI GATNNNNATC 1 cut(s) 1653
BsaHI GRCGYC 1 cut(s) 442
BsaI GGTCTC 2 cut(s) 374, 1445
BsaJI CCNNGG 7 cut(s) 54, 253, 672, 1704, 1860, 2236, 2271
BsaXI ACNNNNNCTCC 2 cut(s) 1717, 1747
Bsc4I CCNNNNNNNGG 4 cut(s) 582, 796, 973, 2053
Bse1I ACTGG 6 cut(s) 821, 1360, 1484, 1511, 1541, 2022
Bse21I CCTNAGG 1 cut(s) 1127
Bse3DI GCAATG 1 cut(s) 1947
Bse8I GATNNNNATC 1 cut(s) 1653
BseBI CCWGG 3 cut(s) 613, 674, 791
BseDI CCNNGG 7 cut(s) 54, 253, 672, 1704, 1860, 2236, 2271
BseGI GGATG 4 cut(s) 425, 814, 1794, 2136
BseJI GATNNNNATC 1 cut(s) 1653
BseLI CCNNNNNNNGG 4 cut(s) 582, 796, 973, 2053
BseMI GCAATG 1 cut(s) 1947
BseMII CTCAG 5 cut(s) 572, 1620, 2084, 2217, 2343
BseNI ACTGG 6 cut(s) 821, 1360, 1484, 1511, 1541, 2022
BseRI GAGGAG 4 cut(s) 1752, 1877, 1880, 2096
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 7 cut(s) 460, 919, 1690, 1705, 1708, 1932, 2044
BsgI GTGCAG 1 cut(s) 1737
Bsh1236I CGCG 1 cut(s) 2206
BshFI GGCC 6 cut(s) 619, 995, 1077, 1502, 1611, 1874
BsiHKCI CYCGRG 1 cut(s) 1859
BsiSI CCGG 2 cut(s) 1193, 2221
BslI CCNNNNNNNGG 4 cut(s) 582, 796, 973, 2053
BsmAI GTCTC 2 cut(s) 374, 1445
BsmI GAATGC 3 cut(s) 265, 606, 1601
BsnI GGCC 6 cut(s) 619, 995, 1077, 1502, 1611, 1874
Bso31I GGTCTC 2 cut(s) 374, 1445
BsoBI CYCGRG 1 cut(s) 1859
Bsp120I GGGCCC 1 cut(s) 993
Bsp1286I GDGCHC 2 cut(s) 997, 2078
Bsp1407I TGTACA 1 cut(s) 16
Bsp143I GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 3 cut(s) 480, 1018, 2392
BspANI GGCC 6 cut(s) 619, 995, 1077, 1502, 1611, 1874
BspCNI CTCAG 5 cut(s) 573, 1619, 2083, 2218, 2344
BspFNI CGCG 1 cut(s) 2206
BspLI GGNNCC 5 cut(s) 994, 995, 1710, 2077, 2119
BspMAI CTGCAG 2 cut(s) 450, 1903
BspPI GGATC 4 cut(s) 1435, 1694, 1791, 2283
BspQI GCTCTTC 1 cut(s) 2175
BspTNI GGTCTC 2 cut(s) 374, 1445
BsrDI GCAATG 1 cut(s) 1947
BsrGI TGTACA 1 cut(s) 16
BsrI ACTGG 6 cut(s) 821, 1360, 1484, 1511, 1541, 2022
BssECI CCNNGG 7 cut(s) 54, 253, 672, 1704, 1860, 2236, 2271
BssMI GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
BssNI GRCGYC 1 cut(s) 442
BssSI CACGAG 1 cut(s) 1671
BssT1I CCWWGG 5 cut(s) 54, 253, 1704, 2236, 2271
Bst2BI CACGAG 1 cut(s) 1671
Bst2UI CCWGG 3 cut(s) 613, 674, 791
Bst4CI ACNGT 2 cut(s) 385, 1962
Bst6I CTCTTC 2 cut(s) 855, 2175
BstACI GRCGYC 1 cut(s) 442
BstAPI GCANNNNNTGC 1 cut(s) 457
BstAUI TGTACA 1 cut(s) 16
BstC8I GCNNGC 5 cut(s) 606, 1075, 1856, 2208, 2396
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 4 cut(s) 425, 814, 1794, 2136
BstFNI CGCG 1 cut(s) 2206
BstHHI GCGC 1 cut(s) 2206
BstKTI GATC 9 cut(s) 142, 904, 1142, 1430, 1702, 1799, 1987, 2232, 2278
BstMAI GTCTC 2 cut(s) 374, 1445
BstMBI GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
BstNI CCWGG 3 cut(s) 613, 674, 791
BstNSI RCATGY 3 cut(s) 608, 1033, 1439
BstSCI CCNGG 5 cut(s) 611, 672, 789, 1192, 2220
BstSFI CTRYAG 3 cut(s) 446, 1725, 1899
BstSLI GKGCMC 1 cut(s) 997
BstUI CGCG 1 cut(s) 2206
BstV1I GCAGC 7 cut(s) 460, 919, 1690, 1705, 1708, 1932, 2044
BstV2I GAAGAC 3 cut(s) 513, 1062, 1416
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 1127
BsuI GTATCC 1 cut(s) 1345
BsuRI GGCC 6 cut(s) 619, 995, 1077, 1502, 1611, 1874
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 606
BtsCI GGATG 4 cut(s) 425, 814, 1794, 2136
BtsI GCAGTG 2 cut(s) 1455, 1754
BtsIMutI CAGTG 4 cut(s) 1455, 1491, 1754, 2015
Cac8I GCNNGC 5 cut(s) 606, 1075, 1856, 2208, 2396
CaiI CAGNNNCTG 1 cut(s) 1721
CfoI GCGC 1 cut(s) 2206
Cfr13I GGNCC 3 cut(s) 812, 993, 994
CseI GACGC 2 cut(s) 1421, 2256
Csp6I GTAC 3 cut(s) 17, 1011, 1571
CviAII CATG 9 cut(s) 55, 399, 605, 796, 956, 1030, 1237, 1348, 1436
CviQI GTAC 3 cut(s) 17, 1011, 1571
DpnI GATC 9 cut(s) 141, 903, 1141, 1429, 1701, 1798, 1986, 2231, 2277
DpnII GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
DrdI GACNNNNNNGTC 1 cut(s) 1418
DriI GACNNNNNGTC 1 cut(s) 1188
DseDI GACNNNNNNGTC 1 cut(s) 1418
EaeI YGGCCR 2 cut(s) 617, 1500
Eam1104I CTCTTC 2 cut(s) 855, 2175
Eam1105I GACNNNNNGTC 1 cut(s) 1188
EarI CTCTTC 2 cut(s) 855, 2175
EciI GGCGGA 1 cut(s) 2381
Eco130I CCWWGG 5 cut(s) 54, 253, 1704, 2236, 2271
Eco24I GRGCYC 2 cut(s) 997, 2078
Eco31I GGTCTC 2 cut(s) 374, 1445
Eco32I GATATC 1 cut(s) 1152
Eco47I GGWCC 1 cut(s) 812
Eco57I CTGAAG 4 cut(s) 149, 1602, 1698, 2148
Eco81I CCTNAGG 1 cut(s) 1127
Eco88I CYCGRG 1 cut(s) 1859
EcoO109I RGGNCCY 2 cut(s) 993, 994
EcoRI GAATTC 1 cut(s) 183
EcoRII CCWGG 3 cut(s) 611, 672, 789
EcoRV GATATC 1 cut(s) 1152
EcoT14I CCWWGG 5 cut(s) 54, 253, 1704, 2236, 2271
EcoT22I ATGCAT 2 cut(s) 606, 1047
EcoT38I GRGCYC 2 cut(s) 997, 2078
ErhI CCWWGG 5 cut(s) 54, 253, 1704, 2236, 2271
FaeI CATG 9 cut(s) 58, 402, 608, 799, 959, 1033, 1240, 1351, 1439
FalI AAGNNNNNCTT 2 cut(s) 2322, 2354
FatI CATG 9 cut(s) 54, 398, 604, 795, 955, 1029, 1236, 1347, 1435
FauNDI CATATG 1 cut(s) 96
FblI GTMKAC 4 cut(s) 387, 710, 1344, 1964
Fnu4HI GCNGC 8 cut(s) 449, 933, 1019, 1679, 1719, 1722, 1946, 2058
FokI GGATG 4 cut(s) 412, 821, 1801, 2123
FriOI GRGCYC 2 cut(s) 997, 2078
Fsp4HI GCNGC 8 cut(s) 449, 933, 1019, 1679, 1719, 1722, 1946, 2058
FspBI CTAG 9 cut(s) 6, 42, 377, 729, 779, 842, 1619, 1628, 2282
GlaI GCGC 1 cut(s) 2205
GluI GCNGC 8 cut(s) 449, 933, 1019, 1679, 1719, 1722, 1946, 2058
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 6 cut(s) 619, 995, 1077, 1502, 1611, 1874
HapII CCGG 2 cut(s) 1193, 2221
HgaI GACGC 2 cut(s) 1421, 2256
HhaI GCGC 1 cut(s) 2206
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 9 cut(s) 58, 402, 608, 799, 959, 1033, 1240, 1351, 1439
Hin6I GCGC 1 cut(s) 2204
HinP1I GCGC 1 cut(s) 2204
HincII GTYRAC 2 cut(s) 711, 1345
HindII GTYRAC 2 cut(s) 711, 1345
HindIII AAGCTT 3 cut(s) 292, 688, 2195
HpaII CCGG 2 cut(s) 1193, 2221
HphI GGTGA 2 cut(s) 1529, 2224
Hpy166II GTNNAC 5 cut(s) 388, 711, 1345, 1370, 1965
Hpy8I GTNNAC 5 cut(s) 388, 711, 1345, 1370, 1965
Hpy99I CGWCG 3 cut(s) 715, 1424, 1550
HpyAV CCTTC 7 cut(s) 292, 748, 1165, 1722, 1864, 2108, 2137
HpyCH4III ACNGT 2 cut(s) 385, 1962
HpyCH4IV ACGT 3 cut(s) 442, 1013, 1419
HpySE526I ACGT 3 cut(s) 442, 1013, 1419
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 9 cut(s) 58, 402, 608, 799, 959, 1033, 1240, 1351, 1439
HspAI GCGC 1 cut(s) 2204
Kzo9I GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
LguI GCTCTTC 1 cut(s) 2175
LmnI GCTCC 3 cut(s) 1561, 1708, 2081
Lsp1109I GCAGC 7 cut(s) 460, 919, 1690, 1705, 1708, 1932, 2044
LweI GCATC 4 cut(s) 469, 1032, 1054, 2219
MaeI CTAG 9 cut(s) 6, 42, 377, 729, 779, 842, 1619, 1628, 2282
MaeII ACGT 3 cut(s) 442, 1013, 1419
MaeIII GTNAC 6 cut(s) 919, 1180, 1327, 2010, 2096, 2380
MalI GATC 9 cut(s) 141, 903, 1141, 1429, 1701, 1798, 1986, 2231, 2277
MboI GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
MfeI CAATTG 1 cut(s) 475
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 997, 2078
MlsI TGGCCA 2 cut(s) 619, 1502
MluNI TGGCCA 2 cut(s) 619, 1502
MlyI GAGTC 5 cut(s) 233, 716, 1559, 2104, 2338
MmeI TCCRAC 3 cut(s) 749, 1760, 1981
Mox20I TGGCCA 2 cut(s) 619, 1502
Mph1103I ATGCAT 2 cut(s) 606, 1047
MroXI GAANNNNTTC 3 cut(s) 263, 849, 1437
MscI TGGCCA 2 cut(s) 619, 1502
MseI TTAA 5 cut(s) 329, 750, 1007, 1890, 2064
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 2 cut(s) 619, 1502
MspA1I CMGCKG 2 cut(s) 881, 1718
MspI CCGG 2 cut(s) 1193, 2221
MspR9I CCNGG 5 cut(s) 613, 674, 791, 1194, 2222
MunI CAATTG 1 cut(s) 475
Mva1269I GAATGC 3 cut(s) 265, 606, 1601
MvaI CCWGG 3 cut(s) 613, 674, 791
MvnI CGCG 1 cut(s) 2206
NciI CCSGG 2 cut(s) 1194, 2222
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 96
NdeII GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
NlaIII CATG 9 cut(s) 58, 402, 608, 799, 959, 1033, 1240, 1351, 1439
NlaIV GGNNCC 5 cut(s) 994, 995, 1710, 2077, 2119
NmuCI GTSAC 4 cut(s) 919, 1180, 2096, 2380
NsiI ATGCAT 2 cut(s) 606, 1047
NspI RCATGY 3 cut(s) 608, 1033, 1439
PaeI GCATGC 1 cut(s) 608
PciI ACATGT 1 cut(s) 1435
PciSI GCTCTTC 1 cut(s) 2175
PcsI WCGNNNNNNNCGW 1 cut(s) 1419
PctI GAATGC 3 cut(s) 265, 606, 1601
PdmI GAANNNNTTC 3 cut(s) 263, 849, 1437
PflMI CCANNNNNTGG 1 cut(s) 2053
PfoI TCCNGGA 2 cut(s) 789, 1192
PkrI GCNGC 8 cut(s) 450, 934, 1020, 1680, 1720, 1723, 1947, 2059
PleI GAGTC 5 cut(s) 233, 715, 1558, 2103, 2338
PpsI GAGTC 5 cut(s) 233, 715, 1558, 2103, 2338
PscI ACATGT 1 cut(s) 1435
Psp6I CCWGG 3 cut(s) 611, 672, 789
PspGI CCWGG 3 cut(s) 611, 672, 789
PspN4I GGNNCC 5 cut(s) 994, 995, 1710, 2077, 2119
PspOMI GGGCCC 1 cut(s) 993
PspPI GGNCC 3 cut(s) 812, 993, 994
PstI CTGCAG 2 cut(s) 450, 1903
PstNI CAGNNNCTG 1 cut(s) 1721
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 881, 1718
RsaI GTAC 3 cut(s) 18, 1012, 1572
RsaNI GTAC 3 cut(s) 17, 1011, 1571
RseI CAYNNNNRTG 1 cut(s) 99
SalI GTCGAC 2 cut(s) 709, 1343
SapI GCTCTTC 1 cut(s) 2175
SaqAI TTAA 5 cut(s) 329, 750, 1007, 1890, 2064
SatI GCNGC 8 cut(s) 449, 933, 1019, 1679, 1719, 1722, 1946, 2058
Sau3AI GATC 9 cut(s) 139, 901, 1139, 1427, 1699, 1796, 1984, 2229, 2275
Sau96I GGNCC 3 cut(s) 812, 993, 994
SchI GAGTC 5 cut(s) 233, 716, 1559, 2104, 2338
ScrFI CCNGG 5 cut(s) 613, 674, 791, 1194, 2222
SduI GDGCHC 2 cut(s) 997, 2078
SfaNI GCATC 4 cut(s) 469, 1032, 1054, 2219
SfcI CTRYAG 3 cut(s) 446, 1725, 1899
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 7 cut(s) 32, 166, 241, 1448, 1801, 2198, 2346
SmoI CTYRAG 7 cut(s) 32, 166, 241, 1448, 1801, 2198, 2346
SpeI ACTAGT 1 cut(s) 778
SphI GCATGC 1 cut(s) 608
SsiI CCGC 3 cut(s) 480, 1018, 2392
SspI AATATT 1 cut(s) 680
SspMI CTAG 9 cut(s) 6, 42, 377, 729, 779, 842, 1619, 1628, 2282
StyD4I CCNGG 5 cut(s) 611, 672, 789, 1192, 2220
StyI CCWWGG 5 cut(s) 54, 253, 1704, 2236, 2271
TaaI ACNGT 2 cut(s) 385, 1962
TaiI ACGT 3 cut(s) 445, 1016, 1422
TaqI TCGA 7 cut(s) 710, 906, 1034, 1344, 1422, 1548, 2006
TatI WGTACW 1 cut(s) 16
TauI GCSGC 1 cut(s) 1021
Tru1I TTAA 5 cut(s) 329, 750, 1007, 1890, 2064
Tru9I TTAA 5 cut(s) 329, 750, 1007, 1890, 2064
TscAI CASTG 4 cut(s) 1462, 1491, 1761, 2022
TseFI GTSAC 4 cut(s) 919, 1180, 2096, 2380
TseI GCWGC 7 cut(s) 448, 932, 1678, 1718, 1721, 1945, 2057
Tsp45I GTSAC 4 cut(s) 919, 1180, 2096, 2380
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 4 cut(s) 1462, 1491, 1761, 2022
Van91I CCANNNNNTGG 1 cut(s) 2053
VpaK11BI GGWCC 1 cut(s) 812
XapI RAATTY 3 cut(s) 183, 893, 1081
XbaI TCTAGA 2 cut(s) 41, 376
XceI RCATGY 3 cut(s) 608, 1033, 1439
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmiI GTMKAC 4 cut(s) 387, 710, 1344, 1964
XmnI GAANNNNTTC 3 cut(s) 263, 849, 1437
XspI CTAG 9 cut(s) 6, 42, 377, 729, 779, 842, 1619, 1628, 2282
ZraI GACGTC 1 cut(s) 443
Zsp2I ATGCAT 2 cut(s) 606, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.