Prupe.3G016700_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000042
Physical Location & Seq
Forward (+)
1191627 .. 1197808
6182 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G016700.1

Sequence Viewer

Length: 4566 bp
ATGGAGATCCTCACCGGAATTATTTCTAAAATAACCGAGTACACAGTTGAACCAATTGGGCGGCAAGTGGGTTATGTAATTGACTACAAAATCAACCTTGAAAATCTGAGGAGACAATTAGAGAACTTAGATGCTGCCAAAGACAGGATGAACCGTACTGTTAATGAAGTTGAAAGAAAAGGTAAACATGTATATCCTGACGTCCAGAAGTGGCTGACAGAAGTAGATGAGATAACTCGAGAGGCAGAAAACATTTTGGGAGATGAATGCCAAGCAAAGACAAACTGTTTCCGTGGAGTATGTCCTAATCTGGTTTCCTATCATCGGCTTAGCAGGAAATCAGCAAAATTAGCAAAAGAGATAGAACTCCACCATGACAAAAAAGAGTTTCCCATTGTTTCTTACGATCCTCCCCTGGAAGAGATATGTGCCACGCCCTCTCAAAACTACATGGCCTTTGAATCAAGGATTTTAATGGTGAATGAAATCATGAAGGAACTGAAAAATCCTGATACCAACATGATTGGGGTGTACGGATTGGGTGGTGTTGGGAAGACCACACTCGCCCAAGAAGTTTATAGACAAGCTACGAAAGAGAACTTATTTGATGAGGTGGTTATAGTGTTGGATGTGAAAAAGTATCCAGACTTGGAAAAAATGGAAAGAATTCAAAAAAAAATTGCTGAAAAGTTAGGTATGGATGTTGATGAAACTCATGATATAGAAGCGAGGGCAAAGCATCTATGGAATAGAATAAAAGACAAGAACATTTTTGTAATTTTAGATGATGTCTGGGAAGCAATTGATTTGGAGGCTTTGGGACTTCGCCCAATGGCAACTTGTAAAATATTGTTGACATCTAGAAATCGAGTCTCTGAGATGAATATGGAAATAGAGTTTCGGCTTGAAGTTTTAAGTGTGAAAGAAAATTGGAGTTTATTTGAGAAGATGGTAGGTGACGTTGTTAAAGATGGCCGTATACATGAAGTAGCAACTGAAATAGCCAAAAAATGTGGAGGTTTGCCGGTTTCAGTTGTTGCAGTTGCAAGGTCTCTAAGGTCAGCCACTACTTTAGAGGAATGGAGAGTTGCCTTGAGGGACTTCAAAAGTTTTGACGAACACGGATTGGCAAAATCAGCCTACTTTGCTTTAGAATGGAGTTACAATCGATTGGATGGGGACGAGCTTAAGCCATTGTTCTTGCTATGTGGAATTATTGCAGGGGGTCGCTGTAAAATTTTATTCACTGACTTGTTGAAATATGCTATGGGTTTGAGTTTGGTGAAAAATGTTCACACAGTGGAAGATGCACGGGATAAATTGATTTCACTGGCTAAAAAACTTATTAAAGATTATTGTTTGTTGCTAGACATTGATGATCATGGAGATATTAGAATGCATGAGCTTCTACGAGAGGTTGCTGTGGGGATTGCATCTAAAGATAGTCACGCCATTGCAAAAGCATATGGAGATGAGCTGAAAGAATGGCCAGATAGGGATTCACTTAAAAAATGCACTGCGATCTCCTTAAAATCTTGCAAGTTCCCCAGACTTCCTGAAGAACCTTGCGTATGCCCAGAATTGAGATTTTTTGTTTTGGAAAGCGATAATGTTGATGACTCCTTGGAAATCCCAGGCAACTATTTTGAAGGGATGAAGGAACTCAAAGTGTTGGATGTAACCAGACTGCGAATTCCGTCACTGCCTCCATCTCTTCAATCCCTAACAAATCTTCAAACTTTGTGTTTAGATCAGTGCGTGTTGGGGGACATAGCTCTAGTTGGACAGCTAACAAGCTTGAAAATTCTTAGCCTTGGACAGTCCCAGGTTAAGGAGTTGCCCAAAGAAATAGGGCAATTGACTCGTCTACAATTGTTGGATTTGACTTGTTGCTCTGAACTTGTACGGATCCCACATAGCGTTATATCAAGCTTGACAAGTCTAGAAGACTTGAGAATGGGAAGCTTTATTAAATGGGAAAGAGCTTTAAATGATGGAAGTAATGCGACCTTGTCAGAGCTGAAAGAATTGCGTCAACTAACTGCATTAGAGATACATATTCCAGATGCTAAGCTTCTTCCAGCAAACATGTTCTCGGATACAAAGTTAGAAAGATACACCATACTTATTGGTGATTGTTGGAGATATCCTAGAATTTACGGAACCTCCTCTAACATGTTAAAACTCAAGCTCACTAGGAACAGTCAATTCGGCCAAGGTATAAAATTGCTGCTAAAGAGATGTGAACATTTGGACTTGGATGGGATGGAGACTGCAAATATTATTTCCTATTTATTAGCAAGTGACATTGGTAAACAACTGAAGAATCTCCATGTCCAAAACAATGAGGAAGTTACATCTCTCATCAACTCGAGTCATGCCTTCCCCAACTTGGAGTCACTATCTCTTTACAACCTTGTTAATTTGGAAACTGTATGTTGTAGCCAACTCATAGCTCAGCCTTTTCAAAAGTTACGATCTTTGACTTTGTGGAATCTGCCAAAGCTTATTGGTTTCTCCTCCAAAGGCAGCAGGCCAGGGGAAGAAATCATTTTGGAGAACGAAATTGGTGGACCCACGAAACTTTTCATGAATGGAGAGGTTCTGATACCCAACTTAACATACTTGATCTTGCATCAATGTGATGGTTTAAGATTCTTGTTTTCACGTTCCATGGCTAGACGTCTTGAGCAACTCAAACATCTTGAGATATCCACATGCCAAATGATGGAAGAAATAGTATCAACAAGTGGATACAATCAAGAACATACAGATAACATGTTTTGCAATCTAAAATATCTAAAGCTGCAACATCTTCCAAGCCTCACAAGATTCTGCTCCGGAAGTTATATTGAATTTTCATTATTGGAGACATTGCATATTGAGGATTGTCCTAGACTGGGGACATTCATCTTTGATGGTAAGAGTGAAATTACTACAATAATGGGCAAAGAAAATGACGATAGGAACTCCAAGGAGAATCTTGACACTGTTATACCACACTTTCTTTTTGATCAAAAGGTAGGATTTCCTAGCTTGGAGAGCTTGATCATCTGTGGCTTACCTAAGTTGAGAACTATATGGCACCGCCAACTTGCCCCAGACTCTTTTCGAAAGCTGAAAAAAGTTGAAGTTTTGGGATGCCAGGGTCTAATAAATATCTTTACGCCAAGTATGATGGGAAGATTGAATGCTCTAGGCACATTAGTGATACAGCAATGCAAATCACTACAAGTAGTTTTTGACATGGAAGTAGTACTTGGCGTTAAAGAAGCATACGGCACATTATCAACCACTCAGTTGAAAACTGTTGGGTGCCCAAATCTGGATTCAGTTGTGATGGATTCGTGTGACAGTTTGAAAAATATCTTTCCAGCCTCATTGGCCAAAGGTCTTCAACAGCTAAGCGAGCTGTACGTGCGGAATTGTGAAATATTGGAAGAAATTGTTGCCAATGACGGACTAGAAACGACACCTGAGTTTGTGTTCTCTAAAGTAACATTTGTGAAATTGTTCTTTCTGCCCCAACTGAGCAGTTTCTATTTGGGGCTACATGTTTCCAAGTGGCCATTACTCAAATCATTGAGATTCATTAAATGTGGTAAAGTGGAGATTCTTGCTTCCGAATATTCAGGATTCCAAGAAAAACTTGATTCCGGTACACCAATCAAACAACCTTTTTTGTTAGTTGACAAGGGTTATCCATTCCCCAACTTGGAAGTATTGGGCTTGGACGAGAACACGAAGATTTGGTATGAAGCGCATAGTCCACTCCCAGCAGAGTTGTTTATCAATCTAAAAATGTTTGCATTTTCTTGTGCACACCCCCAGTCATTTCATTTCCTCCAAGAATTACATAATCTTGAAGAGCTCGTTGTTTATAATGGTCCTTGGAAAGAAATATTTGTGTATGAAGGAACTAGTAGCGGGGAAATAGATGCAGTTGGGAGGACCCTCCCGCACATAAAGATTTTGTATCTCAACGGATTGATGGAGCTGATGCATCTAGGGATTGGGAATGACAACTCTGAATCAGTTTTTCCAAACTTGGAAATTCTAAAGGTGTACAGTTGTGGCAGATTAAAGAATCTAACTTCATCCACAATATCCTTTCACAAACTAACCACTTTACACGTAGCAAATTGTGAGGGACTGAAATACTTAACAACTTATTCGGTGGCTAAATGTTTACACCAACTCAAAAGCTTGGAAGTTGAGAATTGTGAAAGCATGATAGAGATAGTGGCAAGCAACGAAGATGAAGAAGATTCAGGAAATTATTACGAGATTGCTTTCAGCTGCTTGCAACATTTGAAACTTTATTATCTACCAAGTCTGCAAGGCTGTTGCTCATCAGGAAATTGCACTGTTAGAGTCCCATCCCTAAACTCTTTAATCGTCGAGGAATGTCTGATTGAGTTGAAGATTTCCCCTGATGGGTCACTGATCCAAAGTGGTTCAAGACCAGAAAGACAACAAATAACAGAGGAAGTGGAAGAAGAAGAAGAAGAAGATGATGGCAATGAAACGGAAGGAAGGACGCAGCTGATTGCCCGTACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1522

Amino Acids

172.19

Weight (kDa)

5.48

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3882
AatII GACGTC 2 cut(s) 204, 2686
AccB1I GGYRCC 2 cut(s) 3084, 3315
AccB7I CCANNNNNTGG 1 cut(s) 2728
AccI GTMKAC 2 cut(s) 979, 1867
AccIII TCCGGA 1 cut(s) 2840
AciI CCGC 5 cut(s) 61, 3088, 3421, 3927, 3959
AclWI GGATC 4 cut(s) 401, 1903, 1916, 4441
AcoI YGGCCR 5 cut(s) 973, 1487, 2212, 3384, 3566
AcsI RAATTY 7 cut(s) 666, 1236, 1692, 1803, 2154, 2855, 4053
AcuI CTGAAG 2 cut(s) 1578, 2342
AcyI GRCGYC 2 cut(s) 201, 2683
AdeI CACNNNGTG 1 cut(s) 1300
AfaI GTAC 9 cut(s) 41, 157, 533, 1905, 3258, 3416, 3661, 4067, 4558
AfiI CCNNNNNNNGG 9 cut(s) 144, 324, 1831, 2392, 2728, 2900, 3325, 3715, 4437
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 6 cut(s) 187, 2088, 2175, 2778, 3553, 4132
AhlI ACTAGT 1 cut(s) 3920
AjnI CCWGG 5 cut(s) 414, 1633, 1824, 2536, 3144
AjuI GAANNNNNNNTTGG 4 cut(s) 3243, 3275, 3313, 3345
AleI CACNNNNGTG 1 cut(s) 3206
Alw21I GWGCWC 2 cut(s) 3823, 3873
Alw26I GTCTC 5 cut(s) 106, 877, 1056, 2264, 2864
Alw44I GTGCAC 1 cut(s) 3819
AlwI GGATC 4 cut(s) 401, 1903, 1916, 4441
Ama87I CYCGRG 2 cut(s) 237, 2371
Aor13HI TCCGGA 1 cut(s) 2840
AoxI GGCC 7 cut(s) 453, 973, 1487, 2212, 2534, 3384, 3566
ApaLI GTGCAC 1 cut(s) 3819
ApeKI GCWGC 6 cut(s) 134, 2230, 2529, 2806, 4299, 4543
ApoI RAATTY 7 cut(s) 666, 1236, 1692, 1803, 2154, 2855, 4053
Asp700I GAANNNNTTC 4 cut(s) 22, 666, 2585, 3512
AspLEI GCGC 1 cut(s) 3763
AspS9I GGNCC 3 cut(s) 2573, 3887, 3951
AsuHPI GGTGA 5 cut(s) 4, 490, 968, 1294, 2144
AsuII TTCGAA 1 cut(s) 3112
AvaI CYCGRG 2 cut(s) 237, 2371
AvaII GGWCC 3 cut(s) 2573, 3887, 3951
BaeGI GKGCMC 2 cut(s) 3320, 3823
BalI TGGCCA 3 cut(s) 1489, 3386, 3568
BamHI GGATCC 1 cut(s) 1908
BanI GGYRCC 2 cut(s) 3084, 3315
BanII GRGCYC 1 cut(s) 3873
BbsI GAAGAC 3 cut(s) 560, 1953, 3386
Bbv12I GWGCWC 2 cut(s) 3823, 3873
BbvI GCAGC 6 cut(s) 121, 2217, 2541, 2793, 4286, 4555
BceAI ACGGC 2 cut(s) 960, 3295
BcgI CGANNNNNNTGC 2 cut(s) 1844, 1878
BciT130I CCWGG 5 cut(s) 416, 1635, 1826, 2538, 3146
BciVI GTATCC 3 cut(s) 651, 2092, 2747
BclI TGATCA 3 cut(s) 1378, 3013, 3048
BcoDI GTCTC 5 cut(s) 106, 877, 1056, 2264, 2864
BcuI ACTAGT 1 cut(s) 3920
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 3 cut(s) 651, 2092, 2747
BglI GCCNNNNNGGC 1 cut(s) 3383
BisI GCNGC 7 cut(s) 62, 135, 2231, 2530, 2807, 4300, 4544
BlpI GCTNAGC 4 cut(s) 329, 2070, 2457, 3404
BlsI GCNGC 7 cut(s) 63, 136, 2232, 2531, 2808, 4301, 4545
BmcAI AGTACT 1 cut(s) 3258
Bme1390I CCNGG 5 cut(s) 416, 1635, 1826, 2538, 3146
Bme18I GGWCC 3 cut(s) 2573, 3887, 3951
BmeT110I CYCGRG 2 cut(s) 237, 2371
BmgT120I GGNCC 3 cut(s) 2573, 3887, 3951
BmiI GGNNCC 6 cut(s) 1910, 2164, 2575, 3086, 3317, 3953
BmrFI CCNGG 5 cut(s) 416, 1635, 1826, 2538, 3146
BmrI ACTGGG 2 cut(s) 2909, 3823
BmuI ACTGGG 2 cut(s) 2909, 3823
BpiI GAAGAC 3 cut(s) 560, 1953, 3386
Bpu1102I GCTNAGC 4 cut(s) 329, 2070, 2457, 3404
Bpu14I TTCGAA 1 cut(s) 3112
BpuEI CTTGAG 5 cut(s) 1114, 1972, 2171, 2708, 2726
Bsa29I ATCGAT 1 cut(s) 1168
BsaAI YACGTR 2 cut(s) 3418, 4135
BsaHI GRCGYC 2 cut(s) 201, 2683
BsaI GGTCTC 1 cut(s) 1056
BsaWI WCCGGW 3 cut(s) 14, 2840, 3656
BsaXI ACNNNNNCTCC 2 cut(s) 2150, 2180
Bsc4I CCNNNNNNNGG 9 cut(s) 144, 324, 1831, 2392, 2728, 2900, 3325, 3715, 4437
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 3 cut(s) 1335, 2904, 3829
Bse3DI GCAATG 4 cut(s) 1452, 2873, 3224, 4528
BseAI TCCGGA 1 cut(s) 2840
BseBI CCWGG 5 cut(s) 416, 1635, 1826, 2538, 3146
BseCI ATCGAT 1 cut(s) 1168
BseLI CCNNNNNNNGG 9 cut(s) 144, 324, 1831, 2392, 2728, 2900, 3325, 3715, 4437
BseMI GCAATG 4 cut(s) 1452, 2873, 3224, 4528
BseMII CTCAG 6 cut(s) 98, 867, 2471, 3311, 3468, 3521
BseNI ACTGG 3 cut(s) 1335, 2904, 3829
BseRI GAGGAG 3 cut(s) 124, 2158, 2509
BseSI GKGCMC 2 cut(s) 3320, 3823
BseXI GCAGC 6 cut(s) 121, 2217, 2541, 2793, 4286, 4555
BseYI CCCAGC 1 cut(s) 3775
BshFI GGCC 7 cut(s) 455, 975, 1489, 2214, 2536, 3386, 3568
BshNI GGYRCC 2 cut(s) 3084, 3315
BshVI ATCGAT 1 cut(s) 1168
BsiHKAI GWGCWC 2 cut(s) 3823, 3873
BsiHKCI CYCGRG 2 cut(s) 237, 2371
BsiSI CCGG 4 cut(s) 15, 1025, 2841, 3657
BslFI GGGAC 8 cut(s) 834, 1112, 1193, 1781, 1807, 2917, 4164, 4361
BslI CCNNNNNNNGG 9 cut(s) 144, 324, 1831, 2392, 2728, 2900, 3325, 3715, 4437
BsmAI GTCTC 5 cut(s) 106, 877, 1056, 2264, 2864
BsmFI GGGAC 8 cut(s) 834, 1112, 1193, 1781, 1807, 2917, 4164, 4361
BsmI GAATGC 3 cut(s) 272, 1401, 3196
BsnI GGCC 7 cut(s) 455, 975, 1489, 2214, 2536, 3386, 3568
Bso31I GGTCTC 1 cut(s) 1056
BsoBI CYCGRG 2 cut(s) 237, 2371
Bsp119I TTCGAA 1 cut(s) 3112
Bsp1286I GDGCHC 3 cut(s) 3320, 3823, 3873
Bsp13I TCCGGA 1 cut(s) 2840
Bsp1407I TGTACA 1 cut(s) 4065
Bsp1720I GCTNAGC 4 cut(s) 329, 2070, 2457, 3404
Bsp19I CCATGG 1 cut(s) 2673
BspACI CCGC 5 cut(s) 61, 3088, 3421, 3927, 3959
BspANI GGCC 7 cut(s) 455, 975, 1489, 2214, 2536, 3386, 3568
BspCNI CTCAG 6 cut(s) 99, 868, 2470, 3310, 3469, 3522
BspDI ATCGAT 1 cut(s) 1168
BspEI TCCGGA 1 cut(s) 2840
BspHI TCATGA 3 cut(s) 489, 715, 2589
BspLI GGNNCC 6 cut(s) 1910, 2164, 2575, 3086, 3317, 3953
BspPI GGATC 4 cut(s) 401, 1903, 1916, 4441
BspQI GCTCTTC 1 cut(s) 3861
BspT104I TTCGAA 1 cut(s) 3112
BspT107I GGYRCC 2 cut(s) 3084, 3315
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 1 cut(s) 1056
BsrDI GCAATG 4 cut(s) 1452, 2873, 3224, 4528
BsrFI RCCGGY 1 cut(s) 1024
BsrGI TGTACA 1 cut(s) 4065
BsrI ACTGG 3 cut(s) 1335, 2904, 3829
BssAI RCCGGY 1 cut(s) 1024
BssNAI GTATAC 1 cut(s) 980
BssNI GRCGYC 2 cut(s) 201, 2683
BssT1I CCWWGG 6 cut(s) 1623, 1813, 2215, 2673, 2973, 3890
Bst1107I GTATAC 1 cut(s) 980
Bst2UI CCWGG 5 cut(s) 416, 1635, 1826, 2538, 3146
Bst6I CTCTTC 3 cut(s) 414, 1719, 3861
BstACI GRCGYC 2 cut(s) 201, 2683
BstAFI CTTAAG 1 cut(s) 1187
BstAUI TGTACA 1 cut(s) 4065
BstBAI YACGTR 2 cut(s) 3418, 4135
BstBI TTCGAA 1 cut(s) 3112
BstC8I GCNNGC 4 cut(s) 2534, 3410, 4249, 4304
BstDSI CCRYGG 2 cut(s) 292, 2673
BstHHI GCGC 1 cut(s) 3763
BstMAI GTCTC 5 cut(s) 106, 877, 1056, 2264, 2864
BstMWI GCNNNNNNNGC 7 cut(s) 350, 1136, 1145, 3042, 3383, 3409, 3418
BstNI CCWGG 5 cut(s) 416, 1635, 1826, 2538, 3146
BstNSI RCATGY 6 cut(s) 191, 2092, 2179, 2721, 2782, 3557
BstSCI CCNGG 5 cut(s) 414, 1633, 1824, 2536, 3144
BstSLI GKGCMC 2 cut(s) 3320, 3823
BstV1I GCAGC 6 cut(s) 121, 2217, 2541, 2793, 4286, 4555
BstV2I GAAGAC 3 cut(s) 560, 1953, 3386
BstX2I RGATCY 2 cut(s) 6, 1908
BstYI RGATCY 2 cut(s) 6, 1908
BstZ17I GTATAC 1 cut(s) 980
Bsu15I ATCGAT 1 cut(s) 1168
BsuI GTATCC 3 cut(s) 651, 2092, 2747
BsuRI GGCC 7 cut(s) 455, 975, 1489, 2214, 2536, 3386, 3568
BsuTUI ATCGAT 1 cut(s) 1168
BtgI CCRYGG 2 cut(s) 292, 2673
BtsI GCAGTG 2 cut(s) 1515, 1700
BtsIMutI CAGTG 9 cut(s) 1245, 1305, 1328, 1515, 1700, 1760, 2988, 4365, 4442
Cac8I GCNNGC 4 cut(s) 2534, 3410, 4249, 4304
CciI TCATGA 3 cut(s) 489, 715, 2589
CfoI GCGC 1 cut(s) 3763
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 3 cut(s) 2573, 3887, 3951
ClaI ATCGAT 1 cut(s) 1168
CseI GACGC 2 cut(s) 2021, 4549
Csp6I GTAC 9 cut(s) 40, 156, 532, 1904, 3257, 3415, 3660, 4066, 4557
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviQI GTAC 9 cut(s) 40, 156, 532, 1904, 3257, 3415, 3660, 4066, 4557
DraI TTTAAA 1 cut(s) 1989
DraIII CACNNNGTG 1 cut(s) 1300
EaeI YGGCCR 5 cut(s) 973, 1487, 2212, 3384, 3566
Eam1104I CTCTTC 3 cut(s) 414, 1719, 3861
EarI CTCTTC 3 cut(s) 414, 1719, 3861
Ecl136II GAGCTC 1 cut(s) 3871
Eco130I CCWWGG 6 cut(s) 1623, 1813, 2215, 2673, 2973, 3890
Eco24I GRGCYC 1 cut(s) 3873
Eco31I GGTCTC 1 cut(s) 1056
Eco32I GATATC 2 cut(s) 2147, 2712
Eco47I GGWCC 3 cut(s) 2573, 3887, 3951
Eco53kI GAGCTC 1 cut(s) 3871
Eco57I CTGAAG 2 cut(s) 1578, 2342
Eco88I CYCGRG 2 cut(s) 237, 2371
EcoICRI GAGCTC 1 cut(s) 3871
EcoO109I RGGNCCY 1 cut(s) 3951
EcoRI GAATTC 2 cut(s) 666, 1692
EcoRII CCWGG 5 cut(s) 414, 1633, 1824, 2536, 3144
EcoRV GATATC 2 cut(s) 2147, 2712
EcoT14I CCWWGG 6 cut(s) 1623, 1813, 2215, 2673, 2973, 3890
EcoT22I ATGCAT 2 cut(s) 1401, 4005
EcoT38I GRGCYC 1 cut(s) 3873
ErhI CCWWGG 6 cut(s) 1623, 1813, 2215, 2673, 2973, 3890
FalI AAGNNNNNCTT 4 cut(s) 3243, 3275, 3633, 3665
FaqI GGGAC 8 cut(s) 834, 1112, 1193, 1781, 1807, 2917, 4164, 4361
FauI CCCGC 2 cut(s) 3920, 3966
FauNDI CATATG 1 cut(s) 1465
FbaI TGATCA 3 cut(s) 1378, 3013, 3048
FblI GTMKAC 2 cut(s) 979, 1867
Fnu4HI GCNGC 7 cut(s) 62, 135, 2231, 2530, 2807, 4300, 4544
FriOI GRGCYC 1 cut(s) 3873
Fsp4HI GCNGC 7 cut(s) 62, 135, 2231, 2530, 2807, 4300, 4544
GlaI GCGC 1 cut(s) 3762
GluI GCNGC 7 cut(s) 62, 135, 2231, 2530, 2807, 4300, 4544
GsaI CCCAGC 1 cut(s) 3779
HaeIII GGCC 7 cut(s) 455, 975, 1489, 2214, 2536, 3386, 3568
HapII CCGG 4 cut(s) 15, 1025, 2841, 3657
HgaI GACGC 2 cut(s) 2021, 4549
HhaI GCGC 1 cut(s) 3763
Hin1I GRCGYC 2 cut(s) 201, 2683
Hin6I GCGC 1 cut(s) 3761
HinP1I GCGC 1 cut(s) 3761
HincII GTYRAC 3 cut(s) 855, 2036, 3691
HindII GTYRAC 3 cut(s) 855, 2036, 3691
HindIII AAGCTT 6 cut(s) 1795, 1930, 1963, 2072, 2504, 4204
HpaII CCGG 4 cut(s) 15, 1025, 2841, 3657
HphI GGTGA 5 cut(s) 4, 490, 968, 1294, 2144
Hpy188I TCNGA 9 cut(s) 108, 877, 1897, 2017, 2098, 2607, 3625, 4030, 4413
Hpy99I CGWCG 1 cut(s) 4403
HpyAV CCTTC 7 cut(s) 487, 1643, 1651, 2392, 3908, 4526, 4530
HpyCH4IV ACGT 6 cut(s) 201, 960, 2668, 2683, 3417, 4134
HpyF10VI GCNNNNNNNGC 7 cut(s) 350, 1136, 1145, 3042, 3383, 3409, 3418
HpySE526I ACGT 6 cut(s) 201, 960, 2668, 2683, 3417, 4134
Hsp92I GRCGYC 2 cut(s) 201, 2683
HspAI GCGC 1 cut(s) 3761
Kpn2I TCCGGA 1 cut(s) 2840
Ksp22I TGATCA 3 cut(s) 1378, 3013, 3048
LguI GCTCTTC 1 cut(s) 3861
LmnI GCTCC 2 cut(s) 2843, 3994
Lsp1109I GCAGC 6 cut(s) 121, 2217, 2541, 2793, 4286, 4555
MaeII ACGT 6 cut(s) 201, 960, 2668, 2683, 3417, 4134
MfeI CAATTG 4 cut(s) 54, 801, 1856, 1871
MflI RGATCY 2 cut(s) 6, 1908
MhlI GDGCHC 3 cut(s) 3320, 3823, 3873
MlsI TGGCCA 3 cut(s) 1489, 3386, 3568
MluNI TGGCCA 3 cut(s) 1489, 3386, 3568
MlyI GAGTC 7 cut(s) 879, 1613, 1855, 2383, 2405, 3098, 4383
MmeI TCCRAC 5 cut(s) 606, 1653, 1762, 1857, 2120
Mox20I TGGCCA 3 cut(s) 1489, 3386, 3568
Mph1103I ATGCAT 2 cut(s) 1401, 4005
MroI TCCGGA 1 cut(s) 2840
MroXI GAANNNNTTC 4 cut(s) 22, 666, 2585, 3512
MscI TGGCCA 3 cut(s) 1489, 3386, 3568
MslI CAYNNNNRTG 2 cut(s) 2640, 3206
Msp20I TGGCCA 3 cut(s) 1489, 3386, 3568
MspA1I CMGCKG 2 cut(s) 4299, 4546
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 4 cut(s) 15, 1025, 2841, 3657
MspR9I CCNGG 5 cut(s) 416, 1635, 1826, 2538, 3146
MunI CAATTG 4 cut(s) 54, 801, 1856, 1871
Mva1269I GAATGC 3 cut(s) 272, 1401, 3196
MvaI CCWGG 5 cut(s) 416, 1635, 1826, 2538, 3146
MwoI GCNNNNNNNGC 7 cut(s) 350, 1136, 1145, 3042, 3383, 3409, 3418
NcoI CCATGG 1 cut(s) 2673
NdeI CATATG 1 cut(s) 1465
NlaIV GGNNCC 6 cut(s) 1910, 2164, 2575, 3086, 3317, 3953
NmuCI GTSAC 7 cut(s) 956, 1445, 1698, 2303, 2397, 3350, 4440
NsiI ATGCAT 2 cut(s) 1401, 4005
NspI RCATGY 6 cut(s) 191, 2092, 2179, 2721, 2782, 3557
NspV TTCGAA 1 cut(s) 3112
OliI CACNNNNGTG 1 cut(s) 3206
PaeR7I CTCGAG 2 cut(s) 237, 2371
PagI TCATGA 3 cut(s) 489, 715, 2589
PciI ACATGT 5 cut(s) 187, 2088, 2175, 2778, 3553
PciSI GCTCTTC 1 cut(s) 3861
PctI GAATGC 3 cut(s) 272, 1401, 3196
PdmI GAANNNNTTC 4 cut(s) 22, 666, 2585, 3512
PflFI GACNNNGTC 1 cut(s) 2011
PflMI CCANNNNNTGG 1 cut(s) 2728
PkrI GCNGC 7 cut(s) 63, 136, 2232, 2531, 2808, 4301, 4545
PleI GAGTC 7 cut(s) 878, 1613, 1855, 2382, 2404, 3098, 4382
PpsI GAGTC 7 cut(s) 878, 1613, 1855, 2382, 2404, 3098, 4382
Ppu21I YACGTR 2 cut(s) 3418, 4135
PpuMI RGGWCCY 1 cut(s) 3951
PscI ACATGT 5 cut(s) 187, 2088, 2175, 2778, 3553
PsiI TTATAA 1 cut(s) 3882
Psp124BI GAGCTC 1 cut(s) 3873
Psp5II RGGWCCY 1 cut(s) 3951
Psp6I CCWGG 5 cut(s) 414, 1633, 1824, 2536, 3144
PspFI CCCAGC 1 cut(s) 3775
PspGI CCWGG 5 cut(s) 414, 1633, 1824, 2536, 3144
PspN4I GGNNCC 6 cut(s) 1910, 2164, 2575, 3086, 3317, 3953
PspPI GGNCC 3 cut(s) 2573, 3887, 3951
PspPPI RGGWCCY 1 cut(s) 3951
PspXI VCTCGAGB 1 cut(s) 2371
PsuI RGATCY 2 cut(s) 6, 1908
PsyI GACNNNGTC 1 cut(s) 2011
PvuII CAGCTG 2 cut(s) 4299, 4546
RsaI GTAC 9 cut(s) 41, 157, 533, 1905, 3258, 3416, 3661, 4067, 4558
RsaNI GTAC 9 cut(s) 40, 156, 532, 1904, 3257, 3415, 3660, 4066, 4557
RseI CAYNNNNRTG 2 cut(s) 2640, 3206
SacI GAGCTC 1 cut(s) 3873
SapI GCTCTTC 1 cut(s) 3861
SatI GCNGC 7 cut(s) 62, 135, 2231, 2530, 2807, 4300, 4544
Sau96I GGNCC 3 cut(s) 2573, 3887, 3951
ScaI AGTACT 1 cut(s) 3258
SchI GAGTC 7 cut(s) 879, 1613, 1855, 2383, 2405, 3098, 4383
ScrFI CCNGG 5 cut(s) 416, 1635, 1826, 2538, 3146
SduI GDGCHC 3 cut(s) 3320, 3823, 3873
Sfr274I CTCGAG 2 cut(s) 237, 2371
SfuI TTCGAA 1 cut(s) 3112
SinI GGWCC 3 cut(s) 2573, 3887, 3951
SlaI CTCGAG 2 cut(s) 237, 2371
SmiMI CAYNNNNRTG 2 cut(s) 2640, 3206
SmlI CTYRAG 8 cut(s) 237, 1093, 1187, 1951, 2186, 2371, 2687, 2705
SmoI CTYRAG 8 cut(s) 237, 1093, 1187, 1951, 2186, 2371, 2687, 2705
SpeI ACTAGT 1 cut(s) 3920
SsiI CCGC 5 cut(s) 61, 3088, 3421, 3927, 3959
SspI AATATT 5 cut(s) 849, 2281, 3435, 3629, 3903
SstI GAGCTC 1 cut(s) 3873
StyD4I CCNGG 5 cut(s) 414, 1633, 1824, 2536, 3144
StyI CCWWGG 6 cut(s) 1623, 1813, 2215, 2673, 2973, 3890
TaiI ACGT 6 cut(s) 204, 963, 2671, 2686, 3420, 4137
TaqI TCGA 6 cut(s) 238, 868, 1168, 2372, 3112, 4401
TatI WGTACW 3 cut(s) 39, 3256, 4065
TauI GCSGC 1 cut(s) 64
TscAI CASTG 9 cut(s) 1252, 1305, 1335, 1522, 1707, 1760, 2995, 4372, 4449
TseFI GTSAC 7 cut(s) 956, 1445, 1698, 2303, 2397, 3350, 4440
TseI GCWGC 6 cut(s) 134, 2230, 2529, 2806, 4299, 4543
Tsp45I GTSAC 7 cut(s) 956, 1445, 1698, 2303, 2397, 3350, 4440
TspGWI ACGGA 9 cut(s) 281, 549, 1137, 1686, 1921, 2175, 3474, 3999, 4544
TspRI CASTG 9 cut(s) 1252, 1305, 1335, 1522, 1707, 1760, 2995, 4372, 4449
Tth111I GACNNNGTC 1 cut(s) 2011
Van91I CCANNNNNTGG 1 cut(s) 2728
Vha464I CTTAAG 1 cut(s) 1187
VneI GTGCAC 1 cut(s) 3819
VpaK11BI GGWCC 3 cut(s) 2573, 3887, 3951
XapI RAATTY 7 cut(s) 666, 1236, 1692, 1803, 2154, 2855, 4053
XbaI TCTAGA 2 cut(s) 860, 1942
XceI RCATGY 6 cut(s) 191, 2092, 2179, 2721, 2782, 3557
XhoI CTCGAG 2 cut(s) 237, 2371
XmiI GTMKAC 2 cut(s) 979, 1867
XmnI GAANNNNTTC 4 cut(s) 22, 666, 2585, 3512
ZraI GACGTC 2 cut(s) 202, 2684
ZrmI AGTACT 1 cut(s) 3258
Zsp2I ATGCAT 2 cut(s) 1401, 4005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.