disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 85 - 247 | 3.4e-27 | NB-ARC domain |
| LRR_14 | PF23598 | 451 - 795 | 5.8e-09 | Leucine-rich repeat region |
| LRR_RPS2 | PF23247 | 722 - 805 | 7.4e-10 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 826 - 918 | 3.8e-17 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1078 - 1185 | 1.3e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1224 - 1291 | 1.1e-13 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1379 - 1503 | 3e-08 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
| LRR_RPS2 | PF23247 | 1503 - 1587 | 2.7e-10 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 357 |
| Acc65I | GGTACC | 2 cut(s) | 2084, 4905 |
| AccB1I | GGYRCC | 2 cut(s) | 2084, 4905 |
| AccI | GTMKAC | 1 cut(s) | 1642 |
| AccII | CGCG | 1 cut(s) | 1103 |
| AccIII | TCCGGA | 2 cut(s) | 3488, 4760 |
| AciI | CCGC | 9 cut(s) | 990, 1977, 2344, 3068, 3133, 3723, 4034, 4444, 4813 |
| AclWI | GGATC | 3 cut(s) | 547, 1217, 1603 |
| AcoI | YGGCCR | 8 cut(s) | 147, 1268, 2888, 3324, 3831, 3993, 4013, 4596 |
| AcuI | CTGAAG | 9 cut(s) | 642, 1359, 1520, 1782, 2036, 2046, 2249, 3224, 3827 |
| AcyI | GRCGYC | 2 cut(s) | 880, 3609 |
| AflII | CTTAAG | 1 cut(s) | 4498 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 541 |
| AhlI | ACTAGT | 2 cut(s) | 646, 4322 |
| AjiI | CACGTC | 1 cut(s) | 4480 |
| AjnI | CCWGG | 3 cut(s) | 524, 2866, 4464 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1448, 1480 |
| AleI | CACNNNNGTG | 2 cut(s) | 2927, 3950 |
| Alw21I | GWGCWC | 1 cut(s) | 2367 |
| Alw26I | GTCTC | 3 cut(s) | 549, 704, 2645 |
| AlwI | GGATC | 3 cut(s) | 547, 1217, 1603 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 458 |
| Ama87I | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| Aor13HI | TCCGGA | 2 cut(s) | 3488, 4760 |
| ApeKI | GCWGC | 3 cut(s) | 4185, 4381, 4835 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 703, 735 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 12, 441, 847, 2339, 4829 |
| Asp718I | GGTACC | 2 cut(s) | 2084, 4905 |
| AspLEI | GCGC | 1 cut(s) | 1103 |
| AspS9I | GGNCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| AsuII | TTCGAA | 1 cut(s) | 1013 |
| AsuNHI | GCTAGC | 2 cut(s) | 1979, 4079 |
| AvaI | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| AvaII | GGWCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| BalI | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| BanI | GGYRCC | 2 cut(s) | 2084, 4905 |
| BanII | GRGCYC | 1 cut(s) | 2367 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2769, 2801 |
| Bbv12I | GWGCWC | 1 cut(s) | 2367 |
| BbvCI | CCTCAGC | 3 cut(s) | 459, 4068, 4914 |
| BbvI | GCAGC | 3 cut(s) | 4197, 4368, 4847 |
| BccI | CCATC | 6 cut(s) | 890, 1145, 1492, 1746, 2579, 3083 |
| BceAI | ACGGC | 2 cut(s) | 1314, 2875 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3266, 3300, 3583, 3617 |
| BciT130I | CCWGG | 3 cut(s) | 526, 2868, 4466 |
| BciVI | GTATCC | 1 cut(s) | 227 |
| BcoDI | GTCTC | 3 cut(s) | 549, 704, 2645 |
| BcuI | ACTAGT | 2 cut(s) | 646, 4322 |
| BfmI | CTRYAG | 3 cut(s) | 771, 3084, 3573 |
| BfrI | CTTAAG | 1 cut(s) | 4498 |
| BfuI | GTATCC | 1 cut(s) | 227 |
| BglII | AGATCT | 2 cut(s) | 833, 1543 |
| BisI | GCNGC | 3 cut(s) | 4186, 4382, 4836 |
| BlsI | GCNGC | 3 cut(s) | 4187, 4383, 4837 |
| BmcAI | AGTACT | 4 cut(s) | 1443, 1777, 4315, 4577 |
| Bme1390I | CCNGG | 3 cut(s) | 526, 2868, 4466 |
| Bme18I | GGWCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 541 |
| BmeT110I | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| BmgBI | CACGTC | 1 cut(s) | 4480 |
| BmgT120I | GGNCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| BmiI | GGNNCC | 7 cut(s) | 493, 494, 2086, 3094, 4360, 4361, 4907 |
| BmrFI | CCNGG | 3 cut(s) | 526, 2868, 4466 |
| BmrI | ACTGGG | 1 cut(s) | 1323 |
| BmtI | GCTAGC | 2 cut(s) | 1983, 4083 |
| BmuI | ACTGGG | 1 cut(s) | 1323 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 4412, 4444 |
| BpmI | CTGGAG | 2 cut(s) | 3572, 3657 |
| Bpu10I | CCTNAGC | 3 cut(s) | 459, 4068, 4914 |
| Bpu14I | TTCGAA | 1 cut(s) | 1013 |
| BpuEI | CTTGAG | 5 cut(s) | 61, 1820, 2383, 2837, 2910 |
| BsaAI | YACGTR | 1 cut(s) | 4897 |
| BsaHI | GRCGYC | 2 cut(s) | 880, 3609 |
| BsaJI | CCNNGG | 7 cut(s) | 1996, 3321, 3516, 3680, 3828, 4593, 4788 |
| BsaWI | WCCGGW | 2 cut(s) | 3488, 4760 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 665, 695 |
| Bse1I | ACTGG | 9 cut(s) | 1329, 1995, 2793, 3541, 3555, 3640, 4008, 4214, 4653 |
| Bse3DI | GCAATG | 3 cut(s) | 1528, 1990, 3891 |
| BseAI | TCCGGA | 2 cut(s) | 3488, 4760 |
| BseBI | CCWGG | 3 cut(s) | 526, 2868, 4466 |
| BseDI | CCNNGG | 7 cut(s) | 1996, 3321, 3516, 3680, 3828, 4593, 4788 |
| BseMI | GCAATG | 3 cut(s) | 1528, 1990, 3891 |
| BseNI | ACTGG | 9 cut(s) | 1329, 1995, 2793, 3541, 3555, 3640, 4008, 4214, 4653 |
| BseRI | GAGGAG | 3 cut(s) | 476, 1817, 2743 |
| BseXI | GCAGC | 3 cut(s) | 4197, 4368, 4847 |
| BseYI | CCCAGC | 2 cut(s) | 428, 4160 |
| BsgI | GTGCAG | 2 cut(s) | 2762, 4502 |
| Bsh1236I | CGCG | 1 cut(s) | 1103 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3828 |
| BshNI | GGYRCC | 2 cut(s) | 2084, 4905 |
| BsiEI | CGRYCG | 1 cut(s) | 3828 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2367 |
| BsiHKCI | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| BsiSI | CCGG | 4 cut(s) | 3100, 3489, 3992, 4761 |
| BsiWI | CGTACG | 1 cut(s) | 605 |
| BslFI | GGGAC | 6 cut(s) | 505, 1235, 2627, 3106, 4225, 4372 |
| BsmAI | GTCTC | 3 cut(s) | 549, 704, 2645 |
| BsmFI | GGGAC | 6 cut(s) | 505, 1235, 2627, 3106, 4225, 4372 |
| BsmI | GAATGC | 2 cut(s) | 1009, 1182 |
| BsoBI | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| Bsp119I | TTCGAA | 1 cut(s) | 1013 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2367 |
| Bsp13I | TCCGGA | 2 cut(s) | 3488, 4760 |
| Bsp19I | CCATGG | 2 cut(s) | 3321, 4593 |
| BspACI | CCGC | 9 cut(s) | 990, 1977, 2344, 3068, 3133, 3723, 4034, 4444, 4813 |
| BspEI | TCCGGA | 2 cut(s) | 3488, 4760 |
| BspFNI | CGCG | 1 cut(s) | 1103 |
| BspHI | TCATGA | 1 cut(s) | 297 |
| BspLI | GGNNCC | 7 cut(s) | 493, 494, 2086, 3094, 4360, 4361, 4907 |
| BspMAI | CTGCAG | 1 cut(s) | 3088 |
| BspOI | GCTAGC | 2 cut(s) | 1983, 4083 |
| BspPI | GGATC | 3 cut(s) | 547, 1217, 1603 |
| BspQI | GCTCTTC | 2 cut(s) | 499, 957 |
| BspT104I | TTCGAA | 1 cut(s) | 1013 |
| BspT107I | GGYRCC | 2 cut(s) | 2084, 4905 |
| BspTI | CTTAAG | 1 cut(s) | 4498 |
| BsrDI | GCAATG | 3 cut(s) | 1528, 1990, 3891 |
| BsrI | ACTGG | 9 cut(s) | 1329, 1995, 2793, 3541, 3555, 3640, 4008, 4214, 4653 |
| BssECI | CCNNGG | 7 cut(s) | 1996, 3321, 3516, 3680, 3828, 4593, 4788 |
| BssNI | GRCGYC | 2 cut(s) | 880, 3609 |
| BssT1I | CCWWGG | 4 cut(s) | 3321, 3516, 4593, 4788 |
| Bst2UI | CCWGG | 3 cut(s) | 526, 2868, 4466 |
| Bst6I | CTCTTC | 8 cut(s) | 499, 957, 1496, 1716, 2012, 2484, 3085, 4863 |
| BstACI | GRCGYC | 2 cut(s) | 880, 3609 |
| BstAFI | CTTAAG | 1 cut(s) | 4498 |
| BstBAI | YACGTR | 1 cut(s) | 4897 |
| BstBI | TTCGAA | 1 cut(s) | 1013 |
| BstDSI | CCRYGG | 3 cut(s) | 3321, 3828, 4593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 59 |
| BstFNI | CGCG | 1 cut(s) | 1103 |
| BstHHI | GCGC | 1 cut(s) | 1103 |
| BstMAI | GTCTC | 3 cut(s) | 549, 704, 2645 |
| BstMCI | CGRYCG | 1 cut(s) | 3828 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 194, 506, 1100, 1477, 3830, 4001 |
| BstNI | CCWGG | 3 cut(s) | 526, 2868, 4466 |
| BstNSI | RCATGY | 1 cut(s) | 4004 |
| BstSCI | CCNGG | 3 cut(s) | 524, 2866, 4464 |
| BstSFI | CTRYAG | 3 cut(s) | 771, 3084, 3573 |
| BstUI | CGCG | 1 cut(s) | 1103 |
| BstV1I | GCAGC | 3 cut(s) | 4197, 4368, 4847 |
| BstX2I | RGATCY | 3 cut(s) | 833, 1543, 1595 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1891 |
| BstYI | RGATCY | 3 cut(s) | 833, 1543, 1595 |
| BsuI | GTATCC | 1 cut(s) | 227 |
| BtgI | CCRYGG | 3 cut(s) | 3321, 3828, 4593 |
| BtgZI | GCGATG | 1 cut(s) | 1209 |
| BtrI | CACGTC | 1 cut(s) | 4480 |
| BtsI | GCAGTG | 2 cut(s) | 1475, 3403 |
| BtsIMutI | CAGTG | 8 cut(s) | 822, 1475, 2709, 2916, 3403, 3498, 3633, 3870 |
| CaiI | CAGNNNCTG | 1 cut(s) | 458 |
| CciI | TCATGA | 1 cut(s) | 297 |
| CfoI | GCGC | 1 cut(s) | 1103 |
| Cfr13I | GGNCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| CseI | GACGC | 3 cut(s) | 888, 2507, 3617 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 766, 801, 1857, 1892 |
| DraI | TTTAAA | 2 cut(s) | 1042, 2097 |
| DriI | GACNNNNNGTC | 1 cut(s) | 541 |
| EaeI | YGGCCR | 8 cut(s) | 147, 1268, 2888, 3324, 3831, 3993, 4013, 4596 |
| Eam1104I | CTCTTC | 8 cut(s) | 499, 957, 1496, 1716, 2012, 2484, 3085, 4863 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 541 |
| EarI | CTCTTC | 8 cut(s) | 499, 957, 1496, 1716, 2012, 2484, 3085, 4863 |
| EciI | GGCGGA | 2 cut(s) | 2333, 3057 |
| Ecl136II | GAGCTC | 1 cut(s) | 2365 |
| Eco130I | CCWWGG | 4 cut(s) | 3321, 3516, 4593, 4788 |
| Eco147I | AGGCCT | 1 cut(s) | 471 |
| Eco24I | GRGCYC | 1 cut(s) | 2367 |
| Eco32I | GATATC | 3 cut(s) | 745, 2271, 3601 |
| Eco47I | GGWCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| Eco53kI | GAGCTC | 1 cut(s) | 2365 |
| Eco57I | CTGAAG | 9 cut(s) | 642, 1359, 1520, 1782, 2036, 2046, 2249, 3224, 3827 |
| Eco88I | CYCGRG | 3 cut(s) | 473, 3002, 3701 |
| EcoICRI | GAGCTC | 1 cut(s) | 2365 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 3 cut(s) | 492, 3093, 4359 |
| EcoRI | GAATTC | 2 cut(s) | 441, 3428 |
| EcoRII | CCWGG | 3 cut(s) | 524, 2866, 4464 |
| EcoRV | GATATC | 3 cut(s) | 745, 2271, 3601 |
| EcoT14I | CCWWGG | 4 cut(s) | 3321, 3516, 4593, 4788 |
| EcoT22I | ATGCAT | 3 cut(s) | 1182, 4002, 4413 |
| EcoT38I | GRGCYC | 1 cut(s) | 2367 |
| ErhI | CCWWGG | 4 cut(s) | 3321, 3516, 4593, 4788 |
| FaqI | GGGAC | 6 cut(s) | 505, 1235, 2627, 3106, 4225, 4372 |
| FauI | CCCGC | 1 cut(s) | 4451 |
| FauNDI | CATATG | 2 cut(s) | 190, 2824 |
| FblI | GTMKAC | 1 cut(s) | 1642 |
| Fnu4HI | GCNGC | 3 cut(s) | 4186, 4382, 4836 |
| FriOI | GRGCYC | 1 cut(s) | 2367 |
| Fsp4HI | GCNGC | 3 cut(s) | 4186, 4382, 4836 |
| GlaI | GCGC | 1 cut(s) | 1102 |
| GluI | GCNGC | 3 cut(s) | 4186, 4382, 4836 |
| GsaI | CCCAGC | 2 cut(s) | 432, 4164 |
| GsuI | CTGGAG | 2 cut(s) | 3572, 3657 |
| HapII | CCGG | 4 cut(s) | 3100, 3489, 3992, 4761 |
| HgaI | GACGC | 3 cut(s) | 888, 2507, 3617 |
| HhaI | GCGC | 1 cut(s) | 1103 |
| Hin1I | GRCGYC | 2 cut(s) | 880, 3609 |
| Hin6I | GCGC | 1 cut(s) | 1101 |
| HinP1I | GCGC | 1 cut(s) | 1101 |
| HincII | GTYRAC | 3 cut(s) | 2601, 3720, 3861 |
| HindII | GTYRAC | 3 cut(s) | 2601, 3720, 3861 |
| HindIII | AAGCTT | 3 cut(s) | 98, 1705, 4750 |
| HpaII | CCGG | 4 cut(s) | 3100, 3489, 3992, 4761 |
| Hpy99I | CGWCG | 3 cut(s) | 606, 736, 4301 |
| HpyCH4IV | ACGT | 5 cut(s) | 1074, 2801, 3045, 4479, 4896 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 194, 506, 1100, 1477, 3830, 4001 |
| HpySE526I | ACGT | 5 cut(s) | 1074, 2801, 3045, 4479, 4896 |
| Hsp92I | GRCGYC | 2 cut(s) | 880, 3609 |
| HspAI | GCGC | 1 cut(s) | 1101 |
| KflI | GGGWCCC | 2 cut(s) | 492, 4359 |
| Kpn2I | TCCGGA | 2 cut(s) | 3488, 4760 |
| KpnI | GGTACC | 2 cut(s) | 2088, 4909 |
| LguI | GCTCTTC | 2 cut(s) | 499, 957 |
| LmnI | GCTCC | 7 cut(s) | 202, 1098, 1380, 1569, 1804, 2362, 3491 |
| Lsp1109I | GCAGC | 3 cut(s) | 4197, 4368, 4847 |
| MaeII | ACGT | 5 cut(s) | 1074, 2801, 3045, 4479, 4896 |
| MfeI | CAATTG | 2 cut(s) | 950, 1631 |
| MflI | RGATCY | 3 cut(s) | 833, 1543, 1595 |
| MhlI | GDGCHC | 1 cut(s) | 2367 |
| MlsI | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| MluNI | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| MlyI | GAGTC | 4 cut(s) | 1265, 1513, 2740, 4109 |
| Mox20I | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| Mph1103I | ATGCAT | 3 cut(s) | 1182, 4002, 4413 |
| MroI | TCCGGA | 2 cut(s) | 3488, 4760 |
| MroXI | GAANNNNTTC | 5 cut(s) | 12, 441, 847, 2339, 4829 |
| MscI | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1251, 1322, 2115, 2927, 3950 |
| Msp20I | TGGCCA | 5 cut(s) | 1270, 3326, 3833, 4015, 4598 |
| MspA1I | CMGCKG | 1 cut(s) | 4838 |
| MspCI | CTTAAG | 1 cut(s) | 4498 |
| MspI | CCGG | 4 cut(s) | 3100, 3489, 3992, 4761 |
| MspR9I | CCNGG | 3 cut(s) | 526, 2868, 4466 |
| MunI | CAATTG | 2 cut(s) | 950, 1631 |
| Mva1269I | GAATGC | 2 cut(s) | 1009, 1182 |
| MvaI | CCWGG | 3 cut(s) | 526, 2868, 4466 |
| MvnI | CGCG | 1 cut(s) | 1103 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 194, 506, 1100, 1477, 3830, 4001 |
| NcoI | CCATGG | 2 cut(s) | 3321, 4593 |
| NdeI | CATATG | 2 cut(s) | 190, 2824 |
| NheI | GCTAGC | 2 cut(s) | 1979, 4079 |
| NlaIV | GGNNCC | 7 cut(s) | 493, 494, 2086, 3094, 4360, 4361, 4907 |
| NmeAIII | GCCGAG | 1 cut(s) | 175 |
| NmuCI | GTSAC | 7 cut(s) | 820, 1661, 2892, 3218, 3696, 3943, 4490 |
| NsiI | ATGCAT | 3 cut(s) | 1182, 4002, 4413 |
| NspI | RCATGY | 1 cut(s) | 4004 |
| NspV | TTCGAA | 1 cut(s) | 1013 |
| OliI | CACNNNNGTG | 2 cut(s) | 2927, 3950 |
| PaeI | GCATGC | 1 cut(s) | 4004 |
| PaeR7I | CTCGAG | 3 cut(s) | 473, 3002, 3701 |
| PagI | TCATGA | 1 cut(s) | 297 |
| PceI | AGGCCT | 1 cut(s) | 471 |
| PciSI | GCTCTTC | 2 cut(s) | 499, 957 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4839 |
| PctI | GAATGC | 2 cut(s) | 1009, 1182 |
| PdmI | GAANNNNTTC | 5 cut(s) | 12, 441, 847, 2339, 4829 |
| Pfl23II | CGTACG | 1 cut(s) | 605 |
| PfoI | TCCNGGA | 1 cut(s) | 2866 |
| PkrI | GCNGC | 3 cut(s) | 4187, 4383, 4837 |
| PleI | GAGTC | 4 cut(s) | 1264, 1512, 2739, 4108 |
| PpsI | GAGTC | 4 cut(s) | 1264, 1512, 2739, 4108 |
| Ppu21I | YACGTR | 1 cut(s) | 4897 |
| PpuMI | RGGWCCY | 3 cut(s) | 492, 3093, 4359 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| PsiI | TTATAA | 1 cut(s) | 357 |
| Psp124BI | GAGCTC | 1 cut(s) | 2367 |
| Psp5II | RGGWCCY | 3 cut(s) | 492, 3093, 4359 |
| Psp6I | CCWGG | 3 cut(s) | 524, 2866, 4464 |
| PspFI | CCCAGC | 2 cut(s) | 428, 4160 |
| PspGI | CCWGG | 3 cut(s) | 524, 2866, 4464 |
| PspLI | CGTACG | 1 cut(s) | 605 |
| PspN4I | GGNNCC | 7 cut(s) | 493, 494, 2086, 3094, 4360, 4361, 4907 |
| PspPI | GGNCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| PspPPI | RGGWCCY | 3 cut(s) | 492, 3093, 4359 |
| PspXI | VCTCGAGB | 2 cut(s) | 473, 3701 |
| PstI | CTGCAG | 1 cut(s) | 3088 |
| PstNI | CAGNNNCTG | 1 cut(s) | 458 |
| PsuI | RGATCY | 3 cut(s) | 833, 1543, 1595 |
| PvuII | CAGCTG | 1 cut(s) | 4838 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1251, 1322, 2115, 2927, 3950 |
| SacI | GAGCTC | 1 cut(s) | 2367 |
| SapI | GCTCTTC | 2 cut(s) | 499, 957 |
| SatI | GCNGC | 3 cut(s) | 4186, 4382, 4836 |
| Sau96I | GGNCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| ScaI | AGTACT | 4 cut(s) | 1443, 1777, 4315, 4577 |
| SchI | GAGTC | 4 cut(s) | 1265, 1513, 2740, 4109 |
| ScrFI | CCNGG | 3 cut(s) | 526, 2868, 4466 |
| SduI | GDGCHC | 1 cut(s) | 2367 |
| SfcI | CTRYAG | 3 cut(s) | 771, 3084, 3573 |
| Sfr274I | CTCGAG | 3 cut(s) | 473, 3002, 3701 |
| SfuI | TTCGAA | 1 cut(s) | 1013 |
| SinI | GGWCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| SlaI | CTCGAG | 3 cut(s) | 473, 3002, 3701 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1251, 1322, 2115, 2927, 3950 |
| SmlI | CTYRAG | 9 cut(s) | 40, 473, 1799, 2398, 2852, 2925, 3002, 3701, 4498 |
| SmoI | CTYRAG | 9 cut(s) | 40, 473, 1799, 2398, 2852, 2925, 3002, 3701, 4498 |
| SpeI | ACTAGT | 2 cut(s) | 646, 4322 |
| SphI | GCATGC | 1 cut(s) | 4004 |
| SseBI | AGGCCT | 1 cut(s) | 471 |
| SsiI | CCGC | 9 cut(s) | 990, 1977, 2344, 3068, 3133, 3723, 4034, 4444, 4813 |
| SspI | AATATT | 1 cut(s) | 184 |
| SstI | GAGCTC | 1 cut(s) | 2367 |
| StuI | AGGCCT | 1 cut(s) | 471 |
| StyD4I | CCNGG | 3 cut(s) | 524, 2866, 4464 |
| StyI | CCWWGG | 4 cut(s) | 3321, 3516, 4593, 4788 |
| TaiI | ACGT | 5 cut(s) | 1077, 2804, 3048, 4482, 4899 |
| TaqII | GACCGA | 1 cut(s) | 2010 |
| TatI | WGTACW | 6 cut(s) | 1441, 1775, 2785, 3584, 4313, 4575 |
| TscAI | CASTG | 8 cut(s) | 829, 1482, 2709, 2916, 3403, 3505, 3640, 3870 |
| TseFI | GTSAC | 7 cut(s) | 820, 1661, 2892, 3218, 3696, 3943, 4490 |
| TseI | GCWGC | 3 cut(s) | 4185, 4381, 4835 |
| Tsp45I | GTSAC | 7 cut(s) | 820, 1661, 2892, 3218, 3696, 3943, 4490 |
| TspGWI | ACGGA | 4 cut(s) | 623, 686, 1111, 2063 |
| TspRI | CASTG | 8 cut(s) | 829, 1482, 2709, 2916, 3403, 3505, 3640, 3870 |
| Vha464I | CTTAAG | 1 cut(s) | 4498 |
| VpaK11BI | GGWCC | 6 cut(s) | 492, 1993, 3093, 3167, 4205, 4359 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 59 |
| XbaI | TCTAGA | 5 cut(s) | 139, 1489, 2629, 2647, 4474 |
| XceI | RCATGY | 1 cut(s) | 4004 |
| XhoI | CTCGAG | 3 cut(s) | 473, 3002, 3701 |
| XmiI | GTMKAC | 1 cut(s) | 1642 |
| XmnI | GAANNNNTTC | 5 cut(s) | 12, 441, 847, 2339, 4829 |
| ZrmI | AGTACT | 4 cut(s) | 1443, 1777, 4315, 4577 |
| Zsp2I | ATGCAT | 3 cut(s) | 1182, 4002, 4413 |