Rmu_sc0005723.1_g000003

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005723.1
OG0000042
Physical Location & Seq
Reverse (-)
7533 .. 18243
10711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005723.1_g000003.1.cds

Sequence Viewer

Length: 4224 bp
atggagattcttgctgcaattgccggaaaacttgccgagttcacagttgcaccaattggacaccaagtgggttatctagctcactacaaaagcaaccatcaaaagctgcagaccaaattgaaggaactaattgctgtcagagatgaggttcaacataaggttgatcaagttgagagaggaggtaaaagaatcgaggctactgttctgaactggaagacagatgtggatgcaatcatcacagaggcagaggaattcctgagagacgaccgccatgcgcagaccgagtgtcttcatggtttttgtcctcatttggtgcttcattatcgactaagcaggaaatcaacaaaattggccgaggagattgatcagctttatggaaaaattgataaacttgataaaaaaaaggagttctccaactttgcatatgatgttcctccacaagatttatgtcttttatctaccgggcattacagtacattcgattcaaggaattcagttgtgatgagagtcatggaggaactgagaaatccggatacagaaatgattctggtatggggaatcggtggagtagggaagaccacactcgttgaagaagttcttaggcaagctagggatgacaacttatttgatgatttggtgatggtgagagatgtgaaagacaacccagaccttgaaaaaatccaaaaagaaattgccatgaagttgggtatgagcattgtcgaaaatcatactctagctcaaagagcgccccttctaggtgacaggataaaacagaagaggattcttgtagttttagacgatgtttgggaaaaaattgatctagtggctgtcggacttccccgcctggttacttgtaaagtagtgctgacatgtagaagtcgaaaggagttatcattggatatgcgtacacagaaagatatttcggttgatgttttaaatgaagaggaagcatggactttatttgagaagatggctggtgatgttgtcaaagatagccgcatacgaagcgtagccattgaagtagccaaaaaatgtggaggtttgccggtcttgattgttactgttgcaagagctctaaaagacagaaacaagttgcatcattggaatgacaccttgagacgtcttagaggctttgacaacaaagaattgacggaaaaagcatacttggctctggagtggagttacgatcagttggaagataaacagcttaagcctttgttcttgctttgtgggattattgtagttaagaaccatatttatttggcagacttgttgaaatatggttttggtttggatttgattaaaaatgtcaataaaatagaagatgcacgagaggcattgtatacactcgttgacaagcttaaagattcttgcttgttgctggacagtgatatctatatgcatgttagaatgcatgatctcgtatgtgaggttgctacccagattgcatacagagaacaccacgtcttatctgttggatatggtggtgaattgaaagaatggcctgagaaagatttctttgaaaggtgcagtaagatgtctttaaaatccagcaatattcccatgctttctgaagtaccatggaaatgcccgaaactagagatgtttcatttgtatagagaagcaggcctgggtgttgcatcggtggaatttccttccaacttttttagtgaaatggaggtactgaaagtgttgggtttaactgaagtgcgtatgcggtcactgcccccatctcttcagttcttaaagaatgttcagacgttgtgtttagaagactgcgacctggaagaggtagctctagttggacatctaaccaatttggagattcttagctttgcgcggtccaacattagacagctacccaaagaaatagggcaattgattcgattgagatggttggatttgagtgattgtgtcagacttgaagtgatttcacctggtgttatttcaaggttggaaagactagaagacttatcactgagaaacgtctttctcaaatgggaggctgaaaggggaggaagtaatgctagtcttttagagctaaaagacttatctcaactaactgcattggagatatatattgaagatgcaaatattcttccatcaaacttgttctccagtaaattggtaagataccaaatatatattggcgatgtttggaagagcagaggatatcggaagaaggctatggctgaaatgacactcaacacactaaagcttaagctcgcttccagcaatgaattggaccacggtgtcaatacattgttgaagagatctgaagatttgtctttggacggaacagaaagtgtcaaaagtattgcccgtcaattacatgttgaagattttcaacaactgatacacctccgtctcgaaaacaatgttgatttcacctctatcattaataggaaggttgtgttccccaacttaacaactttgagcatatggaactgtgatcatctaagtttcttgttctcattttctatggctcaaagtctggtggagctcaaacattttgaagtatccggatgtgcaataatggaagcgataatatcaacaagagatcaacctaatggagaaaatatcgatatcgtgttccgtaagttggaaagtctaacattaaatcaacttccaaacctcgatagattctatactgaaagttgtactgaattttcttccgtgatgaaatttgatgccgaactgggggcatccatctttgatcctacaagtagtaaaaaacttgatgtcgagaatgggactgctatacgagcatgtctttttgacccacaggtaaaatttcctagcttggagagactgaaaatcgatgggctagggaagttgcacacgctatggaacaataaatttgctgatcaagactctttttgccaactcaaagaagttgaagtttcaaattgcaacagtctgaaaaagatctttccagtctcagtagccagacgtctccaaaagctacattcgctgcatgtggaagagtgtgatgaagtggaggaaatcattactggtgaacaaggactagaaacagagtctcctcatttagtgttcccaaaagtaacacgtgtgggatttctctatctgcccaaactgagtagattctatcctgggattattgcttccaagtggccgttactcaaacaactaaacatttatggatgtgggaaagtgaagatgtttgccgcagaacttccaatttcttcagaaagacatgagccgaaccctctaattgaacaatctctctttctaattgacaaggattcatttcccaatttagaatacttggagctagaacctgcgggtgagatttggtacggtccatcatccccagcacagttctttcccaaattaaaaatgattctgtttctcaagtgggccccgttctccaagcaagccgcaatacatttccttgagaaattaccgaatcttgaggagatacaagtgagctgggatgatgtttccacggaaatatttgtgaatgaagaaattaatggcggtgaggagatgcatgcagtaaaaactttgatggtcgatggaatgcgcaagctcttgcaattagggaatgggaactctcaaacagcgggcccacttttcccaaacttggtcactcttgacgtgtcttggtgtcccatgttaaagagtgtagagtcatccgcaatatccttccgcaatctaacgactctgaggataaagggtagtcatggattggaatacttgacaagttattccgtagctaagagcttaatgcaactgacaacactgcgagtagagtattgtattggcctgagagcaattataggggcaagcaacgaagatgatcatgatacaggagcaacttgtgagattgctttcacccgatttcttctgaaggggtcctgctacttttacgcagaaatagcggaggaggtagatgataatggtgacggagaaaaagaaaaagatgaggatgttggcacgaggagtttcaagatccccagggattccattgaaggtgcatttgagatggcgtggttaataattatctcttctgtgattgtaatatggattgcttctctgttcaaaattctccatggttcatactcaccttccaagggtgctttcttgaatgattctactaatggtggcagtgccgagaagagaaatgtgttgctggttgtttcctacccagatgatgagtccatgttcttcactccaacaataaactaccctaaacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1407

Amino Acids

159.92

Weight (kDa)

5.6

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2252
AatII GACGTC 2 cut(s) 1123, 2956
Acc16I TGCGCA 2 cut(s) 276, 3548
Acc36I ACCTGC 1 cut(s) 3310
AccI GTMKAC 1 cut(s) 1343
AccII CGCG 1 cut(s) 1840
AccIII TCCGGA 2 cut(s) 529, 2522
AclWI GGATC 2 cut(s) 2711, 3970
AcoI YGGCCR 2 cut(s) 351, 3134
AcsI RAATTY 8 cut(s) 251, 490, 1649, 2666, 2684, 2792, 2858, 4068
AcuI CTGAAG 6 cut(s) 1593, 1721, 1725, 2298, 3192, 3893
AcvI CACGTG 1 cut(s) 3071
AcyI GRCGYC 2 cut(s) 1120, 2953
AdeI CACNNNGTG 2 cut(s) 67, 1940
AfaI GTAC 6 cut(s) 475, 907, 1578, 1683, 2662, 3320
AfiI CCNNNNNNNGG 6 cut(s) 755, 1789, 2602, 2700, 3607, 4097
AflII CTTAAG 2 cut(s) 1208, 2219
AflIII ACRYGT 5 cut(s) 869, 2332, 3068, 3070, 3621
AhdI GACNNNNNGTC 1 cut(s) 285
AjiI CACGTC 2 cut(s) 1465, 3622
AjnI CCWGG 6 cut(s) 843, 1629, 1782, 1936, 3112, 3980
AjuI GAANNNNNNNTTGG 2 cut(s) 4088, 4120
Alw21I GWGCWC 2 cut(s) 1075, 2505
Alw26I GTCTC 7 cut(s) 255, 1111, 2372, 2803, 2944, 2960, 3045
AlwI GGATC 2 cut(s) 2711, 3970
Aor13HI TCCGGA 2 cut(s) 529, 2522
AoxI GGCC 7 cut(s) 351, 1502, 1627, 3134, 3381, 3589, 3787
ApaI GGGCCC 2 cut(s) 3385, 3593
ApeKI GCWGC 3 cut(s) 14, 106, 2974
ApoI RAATTY 8 cut(s) 251, 490, 1649, 2666, 2684, 2792, 2858, 4068
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AseI ATTAAT 2 cut(s) 2400, 3495
Asp700I GAANNNNTTC 4 cut(s) 543, 594, 1514, 2343
AspLEI GCGC 4 cut(s) 277, 748, 1840, 3549
AspS9I GGNCC 8 cut(s) 1842, 2245, 3323, 3381, 3382, 3589, 3590, 3879
AsuC2I CCSGG 1 cut(s) 463
AvaII GGWCC 4 cut(s) 1842, 2245, 3323, 3879
BaeGI GKGCMC 2 cut(s) 3385, 3593
BanII GRGCYC 4 cut(s) 1075, 2505, 3385, 3593
BauI CACGAG 2 cut(s) 1329, 3961
BbrPI CACGTG 1 cut(s) 3071
BbsI GAAGAC 5 cut(s) 221, 281, 581, 1779, 1974
Bbv12I GWGCWC 2 cut(s) 1075, 2505
BbvI GCAGC 2 cut(s) 93, 2961
BceAI ACGGC 1 cut(s) 3121
BcgI CGANNNNNNTGC 4 cut(s) 254, 288, 1865, 1899
BciT130I CCWGG 6 cut(s) 845, 1631, 1784, 1938, 3114, 3982
BciVI GTATCC 2 cut(s) 526, 2530
BclI TGATCA 5 cut(s) 163, 364, 2452, 2866, 3823
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 7 cut(s) 255, 1111, 2372, 2803, 2944, 2960, 3045
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 749
BfrI CTTAAG 2 cut(s) 1208, 2219
BfuAI ACCTGC 1 cut(s) 3310
BfuI GTATCC 2 cut(s) 526, 2530
BglII AGATCT 2 cut(s) 2273, 2928
BisI GCNGC 6 cut(s) 15, 107, 997, 2975, 3189, 3402
BlsI GCNGC 6 cut(s) 16, 108, 998, 2976, 3190, 3403
Bme1390I CCNGG 7 cut(s) 463, 845, 1631, 1784, 1938, 3114, 3982
Bme18I GGWCC 4 cut(s) 1842, 2245, 3323, 3879
BmeRI GACNNNNNGTC 1 cut(s) 285
BmgBI CACGTC 2 cut(s) 1465, 3622
BmgT120I GGNCC 8 cut(s) 1842, 2245, 3323, 3381, 3382, 3589, 3590, 3879
BmiI GGNNCC 4 cut(s) 3383, 3384, 3591, 3880
BmrFI CCNGG 7 cut(s) 463, 845, 1631, 1784, 1938, 3114, 3982
BmrI ACTGGG 1 cut(s) 2708
BmsI GCATC 8 cut(s) 217, 1105, 1315, 1649, 2077, 2680, 2714, 3501
BmuI ACTGGG 1 cut(s) 2708
BpiI GAAGAC 5 cut(s) 221, 281, 581, 1779, 1974
BpmI CTGGAG 2 cut(s) 1193, 2101
BpuEI CTTGAG 4 cut(s) 1135, 3359, 3437, 3455
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 2 cut(s) 2583, 2820
BsaAI YACGTR 1 cut(s) 3071
BsaHI GRCGYC 2 cut(s) 1120, 2953
BsaWI WCCGGW 2 cut(s) 529, 2522
BsaXI ACNNNNNCTCC 4 cut(s) 2099, 2129, 3025, 3055
Bsc4I CCNNNNNNNGG 6 cut(s) 755, 1789, 2602, 2700, 3607, 4097
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 5 cut(s) 215, 2118, 2703, 2936, 3019
Bse3DI GCAATG 1 cut(s) 2242
BseAI TCCGGA 2 cut(s) 529, 2522
BseBI CCWGG 6 cut(s) 845, 1631, 1784, 1938, 3114, 3982
BseCI ATCGAT 2 cut(s) 2583, 2820
BseGI GGATG 9 cut(s) 232, 619, 2531, 2705, 3170, 3329, 3463, 3656, 3958
BseLI CCNNNNNNNGG 6 cut(s) 755, 1789, 2602, 2700, 3607, 4097
BseMI GCAATG 1 cut(s) 2242
BseMII CTCAG 8 cut(s) 248, 512, 1497, 1970, 2955, 3089, 3680, 3782
BseNI ACTGG 5 cut(s) 215, 2118, 2703, 2936, 3019
BseRI GAGGAG 7 cut(s) 192, 371, 3033, 3452, 3521, 3923, 3979
BseSI GKGCMC 2 cut(s) 3385, 3593
BseXI GCAGC 2 cut(s) 93, 2961
BseYI CCCAGC 2 cut(s) 3334, 3453
BsgI GTGCAG 1 cut(s) 1549
Bsh1236I CGCG 1 cut(s) 1840
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 7 cut(s) 353, 1504, 1629, 3136, 3383, 3591, 3789
BshVI ATCGAT 2 cut(s) 2583, 2820
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 1075, 2505
BsiSI CCGG 5 cut(s) 24, 462, 530, 1046, 2523
BslFI GGGAC 2 cut(s) 2767, 3618
BslI CCNNNNNNNGG 6 cut(s) 755, 1789, 2602, 2700, 3607, 4097
BsmAI GTCTC 7 cut(s) 255, 1111, 2372, 2803, 2944, 2960, 3045
BsmBI CGTCTC 4 cut(s) 255, 1111, 2372, 2960
BsmFI GGGAC 2 cut(s) 2767, 3618
BsmI GAATGC 2 cut(s) 1416, 3549
BsnI GGCC 7 cut(s) 353, 1504, 1629, 3136, 3383, 3591, 3789
Bsp120I GGGCCC 2 cut(s) 3381, 3589
Bsp1286I GDGCHC 4 cut(s) 1075, 2505, 3385, 3593
Bsp13I TCCGGA 2 cut(s) 529, 2522
Bsp19I CCATGG 2 cut(s) 1580, 4075
BspANI GGCC 7 cut(s) 353, 1504, 1629, 3136, 3383, 3591, 3789
BspCNI CTCAG 8 cut(s) 249, 513, 1498, 1971, 2954, 3090, 3681, 3783
BspDI ATCGAT 2 cut(s) 2583, 2820
BspEI TCCGGA 2 cut(s) 529, 2522
BspFNI CGCG 1 cut(s) 1840
BspHI TCATGA 1 cut(s) 3826
BspLI GGNNCC 4 cut(s) 3383, 3384, 3591, 3880
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 1 cut(s) 3310
BspPI GGATC 2 cut(s) 2711, 3970
BspQI GCTCTTC 1 cut(s) 2156
BspTI CTTAAG 2 cut(s) 1208, 2219
BsrDI GCAATG 1 cut(s) 2242
BsrFI RCCGGY 1 cut(s) 1045
BsrI ACTGG 5 cut(s) 215, 2118, 2703, 2936, 3019
BssAI RCCGGY 1 cut(s) 1045
BssNAI GTATAC 1 cut(s) 1344
BssNI GRCGYC 2 cut(s) 1120, 2953
BssSI CACGAG 2 cut(s) 1329, 3961
BssT1I CCWWGG 3 cut(s) 1580, 4075, 4095
Bst1107I GTATAC 1 cut(s) 1344
Bst2BI CACGAG 2 cut(s) 1329, 3961
Bst2UI CCWGG 6 cut(s) 845, 1631, 1784, 1938, 3114, 3982
Bst6I CTCTTC 9 cut(s) 770, 936, 1740, 1782, 2156, 2264, 2979, 4036, 4136
BstACI GRCGYC 2 cut(s) 1120, 2953
BstAFI CTTAAG 2 cut(s) 1208, 2219
BstBAI YACGTR 1 cut(s) 3071
BstC8I GCNNGC 8 cut(s) 606, 1627, 2226, 3399, 3516, 3551, 3589, 3811
BstDSI CCRYGG 4 cut(s) 1580, 2248, 3468, 4075
BstENI CCTNNNNNAGG 1 cut(s) 1787
BstF5I GGATG 9 cut(s) 232, 619, 2531, 2705, 3170, 3329, 3463, 3656, 3958
BstFNI CGCG 1 cut(s) 1840
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 4 cut(s) 277, 748, 1840, 3549
BstMAI GTCTC 7 cut(s) 255, 1111, 2372, 2803, 2944, 2960, 3045
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 9 cut(s) 20, 743, 1005, 1166, 1334, 1723, 2765, 2971, 3902
BstNI CCWGG 6 cut(s) 845, 1631, 1784, 1938, 3114, 3982
BstNSI RCATGY 6 cut(s) 873, 1406, 2336, 2772, 2981, 3518
BstSCI CCNGG 7 cut(s) 461, 843, 1629, 1782, 1936, 3112, 3980
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 2 cut(s) 3385, 3593
BstUI CGCG 1 cut(s) 1840
BstV1I GCAGC 2 cut(s) 93, 2961
BstV2I GAAGAC 5 cut(s) 221, 281, 581, 1779, 1974
BstX2I RGATCY 3 cut(s) 2273, 2928, 3975
BstXI CCANNNNNNTGG 2 cut(s) 703, 2125
BstYI RGATCY 3 cut(s) 2273, 2928, 3975
BstZ17I GTATAC 1 cut(s) 1344
Bsu15I ATCGAT 2 cut(s) 2583, 2820
BsuI GTATCC 2 cut(s) 526, 2530
BsuRI GGCC 7 cut(s) 353, 1504, 1629, 3136, 3383, 3591, 3789
BsuTUI ATCGAT 2 cut(s) 2583, 2820
BtgI CCRYGG 4 cut(s) 1580, 2248, 3468, 4075
BtgZI GCGATG 1 cut(s) 2166
BtrI CACGTC 2 cut(s) 1465, 3622
BtsCI GGATG 9 cut(s) 232, 619, 2531, 2705, 3170, 3329, 3463, 3656, 3958
BtsI GCAGTG 3 cut(s) 1721, 3764, 4138
BtsIMutI CAGTG 5 cut(s) 1393, 1721, 1976, 3764, 4138
BveI ACCTGC 1 cut(s) 3310
Cac8I GCNNGC 8 cut(s) 606, 1627, 2226, 3399, 3516, 3551, 3589, 3811
CciI TCATGA 1 cut(s) 3826
CfoI GCGC 4 cut(s) 277, 748, 1840, 3549
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 8 cut(s) 1842, 2245, 3323, 3381, 3382, 3589, 3590, 3879
ClaI ATCGAT 2 cut(s) 2583, 2820
CsiI ACCWGGT 1 cut(s) 1936
Csp6I GTAC 6 cut(s) 474, 906, 1577, 1682, 2661, 3319
CspCI CAANNNNNGTGG 4 cut(s) 568, 603, 1015, 1050
CviQI GTAC 6 cut(s) 474, 906, 1577, 1682, 2661, 3319
DraI TTTAAA 2 cut(s) 936, 1545
DraIII CACNNNGTG 2 cut(s) 67, 1940
DrdI GACNNNNNNGTC 1 cut(s) 2252
DriI GACNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 2252
EaeI YGGCCR 2 cut(s) 351, 3134
Eam1104I CTCTTC 9 cut(s) 770, 936, 1740, 1782, 2156, 2264, 2979, 4036, 4136
Eam1105I GACNNNNNGTC 1 cut(s) 285
EarI CTCTTC 9 cut(s) 770, 936, 1740, 1782, 2156, 2264, 2979, 4036, 4136
Ecl136II GAGCTC 2 cut(s) 1073, 2503
Eco130I CCWWGG 3 cut(s) 1580, 4075, 4095
Eco147I AGGCCT 1 cut(s) 1629
Eco24I GRGCYC 4 cut(s) 1075, 2505, 3385, 3593
Eco32I GATATC 3 cut(s) 1393, 2174, 2587
Eco47I GGWCC 4 cut(s) 1842, 2245, 3323, 3879
Eco53kI GAGCTC 2 cut(s) 1073, 2503
Eco57I CTGAAG 6 cut(s) 1593, 1721, 1725, 2298, 3192, 3893
Eco72I CACGTG 1 cut(s) 3071
EcoICRI GAGCTC 2 cut(s) 1073, 2503
EcoNI CCTNNNNNAGG 1 cut(s) 1787
EcoO109I RGGNCCY 2 cut(s) 3382, 3879
EcoRI GAATTC 2 cut(s) 251, 490
EcoRII CCWGG 6 cut(s) 843, 1629, 1782, 1936, 3112, 3980
EcoRV GATATC 3 cut(s) 1393, 2174, 2587
EcoT14I CCWWGG 3 cut(s) 1580, 4075, 4095
EcoT22I ATGCAT 3 cut(s) 1404, 1416, 3516
EcoT38I GRGCYC 4 cut(s) 1075, 2505, 3385, 3593
ErhI CCWWGG 3 cut(s) 1580, 4075, 4095
Esp3I CGTCTC 4 cut(s) 255, 1111, 2372, 2960
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 2 cut(s) 2767, 3618
FauI CCCGC 3 cut(s) 848, 3298, 3580
FauNDI CATATG 2 cut(s) 424, 2441
FbaI TGATCA 5 cut(s) 163, 364, 2452, 2866, 3823
FblI GTMKAC 1 cut(s) 1343
Fnu4HI GCNGC 6 cut(s) 15, 107, 997, 2975, 3189, 3402
FokI GGATG 9 cut(s) 239, 626, 2538, 2692, 3177, 3316, 3470, 3643, 3965
FriOI GRGCYC 4 cut(s) 1075, 2505, 3385, 3593
Fsp4HI GCNGC 6 cut(s) 15, 107, 997, 2975, 3189, 3402
FspI TGCGCA 2 cut(s) 276, 3548
GlaI GCGC 4 cut(s) 276, 747, 1839, 3548
GluI GCNGC 6 cut(s) 15, 107, 997, 2975, 3189, 3402
GsaI CCCAGC 2 cut(s) 3338, 3457
GsuI CTGGAG 2 cut(s) 1193, 2101
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 7 cut(s) 353, 1504, 1629, 3136, 3383, 3591, 3789
HapII CCGG 5 cut(s) 24, 462, 530, 1046, 2523
HhaI GCGC 4 cut(s) 277, 748, 1840, 3549
Hin1I GRCGYC 2 cut(s) 1120, 2953
Hin6I GCGC 4 cut(s) 275, 746, 1838, 3547
HinP1I GCGC 4 cut(s) 275, 746, 1838, 3547
HincII GTYRAC 1 cut(s) 1354
HindII GTYRAC 1 cut(s) 1354
HindIII AAGCTT 2 cut(s) 1358, 2216
HpaII CCGG 5 cut(s) 24, 462, 530, 1046, 2523
Hpy166II GTNNAC 5 cut(s) 42, 908, 1344, 1354, 3020
Hpy8I GTNNAC 5 cut(s) 42, 908, 1344, 1354, 3020
HpyAV CCTTC 9 cut(s) 115, 761, 1665, 2176, 2401, 3679, 3868, 3989, 4101
HpyCH4IV ACGT 7 cut(s) 1120, 1464, 1760, 1986, 2953, 3070, 3621
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 743, 1005, 1166, 1334, 1723, 2765, 2971, 3902
HpySE526I ACGT 7 cut(s) 1120, 1464, 1760, 1986, 2953, 3070, 3621
Hsp92I GRCGYC 2 cut(s) 1120, 2953
HspAI GCGC 4 cut(s) 275, 746, 1838, 3547
Kpn2I TCCGGA 2 cut(s) 529, 2522
Ksp22I TGATCA 5 cut(s) 163, 364, 2452, 2866, 3823
LguI GCTCTTC 1 cut(s) 2156
LmnI GCTCC 3 cut(s) 2500, 3292, 3836
Lsp1109I GCAGC 2 cut(s) 93, 2961
LweI GCATC 8 cut(s) 217, 1105, 1315, 1649, 2077, 2680, 2714, 3501
MabI ACCWGGT 1 cut(s) 1936
MaeII ACGT 7 cut(s) 1120, 1464, 1760, 1986, 2953, 3070, 3621
MaeIII GTNAC 9 cut(s) 758, 847, 1057, 1181, 1719, 3064, 3138, 3610, 3926
MfeI CAATTG 3 cut(s) 18, 54, 1877
MflI RGATCY 3 cut(s) 2273, 2928, 3975
MhlI GDGCHC 4 cut(s) 1075, 2505, 3385, 3593
MlyI GAGTC 6 cut(s) 516, 2867, 3047, 3662, 3679, 4190
Mph1103I ATGCAT 3 cut(s) 1404, 1416, 3516
MroI TCCGGA 2 cut(s) 529, 2522
MroXI GAANNNNTTC 4 cut(s) 543, 594, 1514, 2343
MslI CAYNNNNRTG 2 cut(s) 1104, 1585
MspA1I CMGCKG 1 cut(s) 3587
MspCI CTTAAG 2 cut(s) 1208, 2219
MspI CCGG 5 cut(s) 24, 462, 530, 1046, 2523
MspR9I CCNGG 7 cut(s) 463, 845, 1631, 1784, 1938, 3114, 3982
MunI CAATTG 3 cut(s) 18, 54, 1877
Mva1269I GAATGC 2 cut(s) 1416, 3549
MvaI CCWGG 6 cut(s) 845, 1631, 1784, 1938, 3114, 3982
MvnI CGCG 1 cut(s) 1840
MwoI GCNNNNNNNGC 9 cut(s) 20, 743, 1005, 1166, 1334, 1723, 2765, 2971, 3902
NciI CCSGG 1 cut(s) 463
NcoI CCATGG 2 cut(s) 1580, 4075
NdeI CATATG 2 cut(s) 424, 2441
NlaIV GGNNCC 4 cut(s) 3383, 3384, 3591, 3880
NmeAIII GCCGAG 3 cut(s) 61, 379, 4162
NmuCI GTSAC 4 cut(s) 758, 1719, 3610, 3926
NsbI TGCGCA 2 cut(s) 276, 3548
NsiI ATGCAT 3 cut(s) 1404, 1416, 3516
NspI RCATGY 6 cut(s) 873, 1406, 2336, 2772, 2981, 3518
PaeI GCATGC 1 cut(s) 3518
PagI TCATGA 1 cut(s) 3826
PasI CCCWGGG 1 cut(s) 3981
PceI AGGCCT 1 cut(s) 1629
PciI ACATGT 2 cut(s) 869, 2332
PciSI GCTCTTC 1 cut(s) 2156
PctI GAATGC 2 cut(s) 1416, 3549
PdmI GAANNNNTTC 4 cut(s) 543, 594, 1514, 2343
PkrI GCNGC 6 cut(s) 16, 108, 998, 2976, 3190, 3403
PleI GAGTC 6 cut(s) 515, 2867, 3046, 3661, 3679, 4189
PmaCI CACGTG 1 cut(s) 3071
PmlI CACGTG 1 cut(s) 3071
PpsI GAGTC 6 cut(s) 515, 2867, 3046, 3661, 3679, 4189
Ppu21I YACGTR 1 cut(s) 3071
PpuMI RGGWCCY 1 cut(s) 3879
PscI ACATGT 2 cut(s) 869, 2332
PshBI ATTAAT 2 cut(s) 2400, 3495
Psp124BI GAGCTC 2 cut(s) 1075, 2505
Psp5II RGGWCCY 1 cut(s) 3879
Psp6I CCWGG 6 cut(s) 843, 1629, 1782, 1936, 3112, 3980
PspCI CACGTG 1 cut(s) 3071
PspFI CCCAGC 2 cut(s) 3334, 3453
PspGI CCWGG 6 cut(s) 843, 1629, 1782, 1936, 3112, 3980
PspN4I GGNNCC 4 cut(s) 3383, 3384, 3591, 3880
PspOMI GGGCCC 2 cut(s) 3381, 3589
PspPI GGNCC 8 cut(s) 1842, 2245, 3323, 3381, 3382, 3589, 3590, 3879
PspPPI RGGWCCY 1 cut(s) 3879
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 3 cut(s) 2273, 2928, 3975
RsaI GTAC 6 cut(s) 475, 907, 1578, 1683, 2662, 3320
RsaNI GTAC 6 cut(s) 474, 906, 1577, 1682, 2661, 3319
RseI CAYNNNNRTG 2 cut(s) 1104, 1585
SacI GAGCTC 2 cut(s) 1075, 2505
SapI GCTCTTC 1 cut(s) 2156
SatI GCNGC 6 cut(s) 15, 107, 997, 2975, 3189, 3402
Sau96I GGNCC 8 cut(s) 1842, 2245, 3323, 3381, 3382, 3589, 3590, 3879
SchI GAGTC 6 cut(s) 516, 2867, 3047, 3662, 3679, 4190
ScrFI CCNGG 7 cut(s) 463, 845, 1631, 1784, 1938, 3114, 3982
SduI GDGCHC 4 cut(s) 1075, 2505, 3385, 3593
SexAI ACCWGGT 1 cut(s) 1936
SfaNI GCATC 8 cut(s) 217, 1105, 1315, 1649, 2077, 2680, 2714, 3501
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 4 cut(s) 1842, 2245, 3323, 3879
SmiMI CAYNNNNRTG 2 cut(s) 1104, 1585
SmlI CTYRAG 6 cut(s) 1114, 1208, 2219, 3374, 3416, 3434
SmoI CTYRAG 6 cut(s) 1114, 1208, 2219, 3374, 3416, 3434
SphI GCATGC 1 cut(s) 3518
SseBI AGGCCT 1 cut(s) 1629
SspI AATATT 3 cut(s) 1558, 2095, 3477
SstI GAGCTC 2 cut(s) 1075, 2505
StuI AGGCCT 1 cut(s) 1629
StyD4I CCNGG 7 cut(s) 461, 843, 1629, 1782, 1936, 3112, 3980
StyI CCWWGG 3 cut(s) 1580, 4075, 4095
TaiI ACGT 7 cut(s) 1123, 1467, 1763, 1989, 2956, 3073, 3624
TaqII GACCGA 1 cut(s) 296
TatI WGTACW 2 cut(s) 473, 2660
TauI GCSGC 3 cut(s) 999, 3191, 3404
TscAI CASTG 5 cut(s) 1393, 1728, 1983, 3771, 4138
TseFI GTSAC 4 cut(s) 758, 1719, 3610, 3926
TseI GCWGC 3 cut(s) 14, 106, 2974
Tsp45I GTSAC 4 cut(s) 758, 1719, 3610, 3926
TspGWI ACGGA 8 cut(s) 1166, 2310, 2354, 2585, 2665, 3485, 3724, 3945
TspRI CASTG 5 cut(s) 1393, 1728, 1983, 3771, 4138
Vha464I CTTAAG 2 cut(s) 1208, 2219
VpaK11BI GGWCC 4 cut(s) 1842, 2245, 3323, 3879
VspI ATTAAT 2 cut(s) 2400, 3495
XagI CCTNNNNNAGG 1 cut(s) 1787
XapI RAATTY 8 cut(s) 251, 490, 1649, 2666, 2684, 2792, 2858, 4068
XceI RCATGY 6 cut(s) 873, 1406, 2336, 2772, 2981, 3518
XcmI CCANNNNNNNNNTGG 2 cut(s) 2144, 2239
XmiI GTMKAC 1 cut(s) 1343
XmnI GAANNNNTTC 4 cut(s) 543, 594, 1514, 2343
ZraI GACGTC 2 cut(s) 1121, 2954
Zsp2I ATGCAT 3 cut(s) 1404, 1416, 3516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.