RchiOBHm_Chr4g0397921

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000042
Physical Location & Seq
Reverse (-)
14344631 .. 14349369
4739 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37014

Sequence Viewer

Length: 4032 bp
ATGGCATTTCTTATTGAAATTGGTACTACAATTGTCGCAAAGCTAGCTGAGTACATGGTTGAACCAGTTATACGCCAAGCAGGTTATATAATCTGCTACAACAAGAACCTCAAAAAACTACAAAATCAAGTCAGTGACTTAGTTGGAGCCAGAATAAGCATGCAGCATGCTGTTGAAACAGAAGAAAGAAAAGGTAAAAAAATTGAAAAAGGGGTCCAGAACTGGCTGACTGAAGTGGATCAGCTGACTAAAGAAGCAGATGACTTCTTGAAAGATGAACACCATGCAGAGACCAAGTGTCTACAGGGCTTTTGTCCTAATCTGAAGCTTCGTCATCATCTAAGCAGGAAATCAACAAAAATGGCTCAAGAGGTGGCTGAGCTTTATGAGAAAAAGAAGAACTTTGACAATATTGCATATGCTGCTTCCCAAGAAGAGGTGTGTGTAGCAGCTCTCCAAGATTATGAGGCCTTTGATTCAAGGACTTCAGCTGCGAAGGATGTAATCAACGAATTGAGAAATTCTAATACCTACATGATTGGGGTGTACGGTATTGGGGGTGTGGGAAAAACAACACTTGTCAAAGAAGTTTATAAGCAATTAGCTACAGGAGGTGAGAAGCTGTTTGATGAGGTAGTTATGGTACTCGATCTGAAAAAGAATCCCAGCATCAATAGAATTCAAAAAGAAATTGCTGAGAAGTTAGGTCTCGAGATTCTCGAAACTGAGACCTTAGCTGGAAGAGCACGTCGAATAAATAACAGGATCAAAGACAAGAAGTCTCTTGTGATCCTAGATGATGTTTGGGAAAACATCGATTTGGGGGATGTGGGTCTTCCTCGAATGGAAACTCTTAAAATATTATTGACTTCTCGAAGCAAACTAGTATTATCTTCCGATATGGGTACACAAAAGGAGTTTCCTCTTGAAGTTTTAGATAAAGATGAAGCTTGGAGTTTATTTCAGAAGACGGCAGGTGATATTGTTAAGAATCCCAATATTGGAACTATAGCTACCCATGTAGCTGAAAAGTGTGGAGGTTTGCCACTTTTGATTGTCACTGTTGCAAGATCCCTGAGAAATAGTTCATTACAAGCATGGAAAGATACTTTCAGACGCCTAAAAAGGTTGGATGGAAAAGGATTGACAGAGAAAACATACTCTGCTATTGAGTGGAGTTACAATCAATTGGGTGATGAGGAGCTTAAATCATTGTTCTTACTGTGTGGACATATTATGTCGGGGTATTCGAACACTATTTATATCCTTGATCTGTTTAAATATAGCATGGGTCTGAGCTTGTTAAAGAACGTGAATACATTAGCAGAAGCACTGATTGCATTGTATTCTCTACTTGAAAAACTCAAAGATTCTTGTCTATTGCTAGATGGCTATGCTAATTCAAATTGCAGAATGCATGATCTTGTAGGCGATGTTGCTAATCGGATTATGGTCAGGGATAATCACATCATATCATCCACACTTGAAGATGAGTTGAAAGATTGGCCAGATAAGGACTCGCTTAAAAAATGCACGGCAATATCTTTTCCTTACACGGTTATCCCCCGTCTTCCTGAAGTTTTGGAATGTCCAGAACTGAAAATGTTTATTTTGTGGAGTAGGGATGTTACATTGGAAATTCCATGCAACATTTTTGAAAAGATGGAAAAACTCAAGGTACTTGATTTAACCAAATTGAGTTTTTTGCCTTCACTACCACCATCTCTAGAGTTCCTGAAGAGTCTTAAAACATTGTGTTTAGATCATTGCAAGTTAGGAGATCTATCTCTAGTCGGGCAACTTGGAAGCTTAGAATTTCTCAGTTTTAAAGGATCCAATTTTAAGCAGTTGCCCAAAGAAATAGGGCAATTAACTTGTCTACGATTGTTGGATTTGAGTGGCTGCTCTCAACTCGAACTTATTCCACCTAATGTTCTATCAAGCTTGACAAGATTAGAAGACTTGAGAATGGGAAATAGTTTTAATCAATGGGAGGCTGAAGGAGTCATCAGTACTGAAAGAAGTAATGCAAGCCTTGAAGAGCTAAAGCACTTGCATCAGCTAATTGCATTACAACTACATATCCCAGATGATGTTATTCTTCCAGTAGATTTGTTCACCACTAAGTTGGAGACATTCCAAATATGTATTGGTTCTGCGTGGAAATGGGCTGATGTCGATGAAACCCTCAATGCATTGAAACTCAAATTCACCACTAGCAATGAATTGGACCAAGGTTTAAAAATGCTACTTAAGAGAACTGAAGACTTGTATTTGGAGGACATGGAGGGTGTAAATCATAGTATTTTATATGAATTAGTTACTGAAGGTTTTCAGCAACTGAAACATCTTCATGTCCAAAACAATACTGATTTTGCATACATCATCAATGGCAAGGTTGGTTTTCCGAACTTAACATGGTTGGAGGTGACTGGACTCAATGATTTAAGATTCTTGTTCTCATCTTCAACTGCTAGAAGTCTTCTACAACTCAAACGTCTTCAGATATCGGGATGTCAAATCATGGAAGCAATAGTATCAATAGAAGAATTTAATGAGATTGCAGAGAAACTGTTTTGCCAACTACAAGATTTGGAGCTAAAAGACCTTCCAAAGCTCACTAAATTCTGCTCAAGAAAGTATACTGAATTTTCAAATCCATCCTCTGGTAGACTGCAATTGGAGGACTGTATTAAAAGAAATACAATTGGTGATGAAATTGAAGAGATAAACTCAACTGGAAACCTTGACGTTGTAATCCAACACTTTCTGTTTGATAACAAGATAGAGTTTCCAAACTTGAAGAAGTTATCCATTGATGGCCTAGCAAAGTTGACAACAGTATGGAACAATCAACTTTCTCTAGAGAGTTCAAAAAATCTAGAGGGAATAAAAATTGTTTCATGTGACAGTTTGAAAAGTATATTTCCAGCCTCAGTGGCTAGAAGTCTTCTACAGTTGAGGAGTGTGGAAGTTCAGAATTGTGGGGTAGAGCAAATCGTCTCGAAAGAAGATGATGTACAGACAACACCTATGTTTGTTTTTTCAAAACTAACATATGTTCAATTTCAAGATTTACCCCGACTTAGGAGTTTCTATCCAGGATTGCATTCTTCGAAGTGGCCGTCACTCGTAACTTTGTTGGTGTACGATTGTACTAAAGTGCAAATATTTGCAGACGTCAGGCGTGAGTTGAACAATCTTTGCACTCCAAATAAACAATCTTTGTTTTTACTTGAGAAGGATTCATTTCCCAATTTGGAAACGTTAGGCTTGGACGTAATGGAGAATTGGGATAGTCTGCCACTCTACCTGTTCAGGAAGCTCAAATATCTTTGTAGTTATGCATACACCAACTCATCTTTGAATTCTCTTGAGAAATTACTTGGTCTTGAAAAAGTCAATGTGAGTAGTAATGGAGAAATACATGCAGTTGGGGATGGGACCCTCCCACATTTAAGACAGTTGTACCTTTGCGGAATGCGGAAGCTGATGAATCTTGGGGAGGATAACTTCGGACCAGCATGCTCTTATTTTCCAAATCTGGAAACTCTGACGCTGGAAGACTGCGACAGCTTAAAGAATTTAAGATCATCCGCAATATCCTTCAAGAATATAACAACTTTGCAAGTAAGTCGTTGTAAGGGATTGAAATACTTGATATCTTTCTCCATGGCCAAAAGTTTGATGCAACTCACAAAACTGGAAGTCCAAGATTGTGAGGAAATGATAGAAATATTGGGGAGCAATGAAAATGATGATTCAGAAAATGAAGTTGAATTCAGGATGTTGAAACATTTGGACCTTTCTGCTCTACCAAGTCTGAGAGGCTTTTGCTCGACGACTCGCATTGTCAAATTCCCAGCCATGGAAAATTTATCGATGAGTAGTTGTACTCAACTGGAGACGTTCATCTTTGATTCTGTGGGTAAAAGTAATACAATTGGCAATGACATCAAAGACACCGACTCAAGCGAAAACTATGAGACTGAAGTAGTGCAACCTTTTCTTTTTGACAACAAGGTGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1343

Amino Acids

152.03

Weight (kDa)

5.47

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 165 - 326 5.8e-31 NB-ARC domain
AAA_22 PF13401 176 - 288 8.3e-06 AAA domain
LRR_14 PF23598 533 - 817 2.2e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 782 - 883 2.6e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 928 - 996 6e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1199 - 1309 9.5e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
AarI CACCTGC 1 cut(s) 965
AatII GACGTC 1 cut(s) 3183
Acc36I ACCTGC 2 cut(s) 71, 965
AccB7I CCANNNNNTGG 1 cut(s) 2666
AccI GTMKAC 4 cut(s) 301, 1879, 2642, 2671
AciI CCGC 3 cut(s) 3477, 3484, 3597
AclI AACGTT 1 cut(s) 3266
AclWI GGATC 6 cut(s) 246, 773, 784, 1065, 1827, 1840
AcoI YGGCCR 3 cut(s) 1505, 3122, 3675
AcyI GRCGYC 2 cut(s) 1117, 3180
AfiI CCNNNNNNNGG 5 cut(s) 436, 1001, 2666, 3087, 3868
AflII CTTAAG 1 cut(s) 2252
AhdI GACNNNNNGTC 2 cut(s) 297, 778
AhlI ACTAGT 1 cut(s) 883
AjiI CACGTC 1 cut(s) 749
AjnI CCWGG 1 cut(s) 3100
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 8 cut(s) 284, 713, 722, 786, 2126, 3007, 3899, 3980
AlwI GGATC 6 cut(s) 246, 773, 784, 1065, 1827, 1840
AlwNI CAGNNNCTG 1 cut(s) 2341
Ama87I CYCGRG 1 cut(s) 710
AoxI GGCC 5 cut(s) 468, 1505, 2821, 3122, 3675
ApeKI GCWGC 5 cut(s) 163, 422, 449, 491, 1902
ArsI GACNNNNNNTTYG 2 cut(s) 3110, 3142
Asp700I GAANNNNTTC 3 cut(s) 1084, 1920, 2331
AspS9I GGNCC 5 cut(s) 214, 2230, 3444, 3518, 3802
AsuHPI GGTGA 7 cut(s) 626, 989, 1205, 2110, 2203, 2440, 2723
AsuII TTCGAA 2 cut(s) 1250, 3116
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 5 cut(s) 214, 2230, 3444, 3518, 3802
BaeI ACNNNNGTAYC 2 cut(s) 3452, 3485
BalI TGGCCA 2 cut(s) 1507, 3677
BamHI GGATCC 1 cut(s) 1832
BarI GAAGNNNNNNTAC 2 cut(s) 3003, 3035
BbsI GAAGAC 9 cut(s) 827, 974, 1562, 1965, 2271, 2474, 2492, 2942, 3570
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 5 cut(s) 175, 409, 461, 478, 1889
BccI CCATC 7 cut(s) 1127, 1382, 1657, 1729, 2668, 2813, 3434
BceAI ACGGC 3 cut(s) 987, 1551, 3109
BcgI CGANNNNNNTGC 2 cut(s) 3617, 3651
BciT130I CCWGG 1 cut(s) 3102
BcoDI GTCTC 8 cut(s) 284, 713, 722, 786, 2126, 3007, 3899, 3980
BcuI ACTAGT 1 cut(s) 883
BfmI CTRYAG 4 cut(s) 302, 606, 1008, 2954
BfrI CTTAAG 1 cut(s) 2252
BfuAI ACCTGC 2 cut(s) 71, 965
BglI GCCNNNNNGGC 1 cut(s) 2939
BglII AGATCT 1 cut(s) 1780
BisI GCNGC 5 cut(s) 164, 423, 450, 492, 1903
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 5 cut(s) 165, 424, 451, 493, 1904
BmcAI AGTACT 1 cut(s) 2014
Bme1390I CCNGG 1 cut(s) 3102
Bme18I GGWCC 5 cut(s) 214, 2230, 3444, 3518, 3802
BmeRI GACNNNNNGTC 2 cut(s) 297, 778
BmeT110I CYCGRG 1 cut(s) 710
BmgBI CACGTC 1 cut(s) 749
BmgT120I GGNCC 5 cut(s) 214, 2230, 3444, 3518, 3802
BmiI GGNNCC 5 cut(s) 148, 215, 1834, 3445, 3446
BmrFI CCNGG 1 cut(s) 3102
BmsI GCATC 3 cut(s) 678, 2065, 3678
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 9 cut(s) 827, 974, 1562, 1965, 2271, 2474, 2492, 2942, 3570
BplI GAGNNNNNCTC 2 cut(s) 2717, 2749
BpmI CTGGAG 1 cut(s) 3923
Bpu10I CCTNAGC 1 cut(s) 733
Bpu1102I GCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 2 cut(s) 1250, 3116
BpuEI CTTGAG 7 cut(s) 351, 1658, 1984, 2617, 3257, 3395, 3955
Bsa29I ATCGAT 2 cut(s) 816, 3881
BsaHI GRCGYC 2 cut(s) 1117, 3180
BsaI GGTCTC 3 cut(s) 284, 713, 722
BsaJI CCNNGG 3 cut(s) 2233, 3672, 3867
Bsc4I CCNNNNNNNGG 5 cut(s) 436, 1001, 2666, 3087, 3868
Bse1I ACTGG 7 cut(s) 65, 227, 2105, 2437, 2743, 3708, 3906
Bse3DI GCAATG 4 cut(s) 1765, 2227, 3754, 3955
BseBI CCWGG 1 cut(s) 3102
BseCI ATCGAT 2 cut(s) 816, 3881
BseDI CCNNGG 3 cut(s) 2233, 3672, 3867
BseLI CCNNNNNNNGG 5 cut(s) 436, 1001, 2666, 3087, 3868
BseMI GCAATG 4 cut(s) 1765, 2227, 3754, 3955
BseMII CTCAG 9 cut(s) 39, 369, 687, 717, 1067, 1286, 1834, 2949, 3815
BseNI ACTGG 7 cut(s) 65, 227, 2105, 2437, 2743, 3708, 3906
BseRI GAGGAG 2 cut(s) 1214, 2977
BseXI GCAGC 5 cut(s) 175, 409, 461, 478, 1889
BseYI CCCAGC 2 cut(s) 665, 3862
BshFI GGCC 5 cut(s) 470, 1507, 2823, 3124, 3677
BshVI ATCGAT 2 cut(s) 816, 3881
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 1 cut(s) 710
BslFI GGGAC 1 cut(s) 3457
BslI CCNNNNNNNGG 5 cut(s) 436, 1001, 2666, 3087, 3868
BsmAI GTCTC 8 cut(s) 284, 713, 722, 786, 2126, 3007, 3899, 3980
BsmBI CGTCTC 2 cut(s) 3007, 3899
BsmFI GGGAC 1 cut(s) 3457
BsmI GAATGC 3 cut(s) 1419, 3109, 3486
BsnI GGCC 5 cut(s) 470, 1507, 2823, 3124, 3677
Bso31I GGTCTC 3 cut(s) 284, 713, 722
BsoBI CYCGRG 1 cut(s) 710
Bsp119I TTCGAA 2 cut(s) 1250, 3116
Bsp1286I GDGCHC 1 cut(s) 748
Bsp1407I TGTACA 1 cut(s) 3019
Bsp1720I GCTNAGC 1 cut(s) 378
Bsp19I CCATGG 2 cut(s) 3672, 3867
BspACI CCGC 3 cut(s) 3477, 3484, 3597
BspANI GGCC 5 cut(s) 470, 1507, 2823, 3124, 3677
BspCNI CTCAG 9 cut(s) 40, 370, 688, 718, 1068, 1287, 1833, 2948, 3816
BspDI ATCGAT 2 cut(s) 816, 3881
BspLI GGNNCC 5 cut(s) 148, 215, 1834, 3445, 3446
BspMI ACCTGC 2 cut(s) 71, 965
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 6 cut(s) 246, 773, 784, 1065, 1827, 1840
BspQI GCTCTTC 2 cut(s) 736, 2034
BspT104I TTCGAA 2 cut(s) 1250, 3116
BspTI CTTAAG 1 cut(s) 2252
BspTNI GGTCTC 3 cut(s) 284, 713, 722
BsrDI GCAATG 4 cut(s) 1765, 2227, 3754, 3955
BsrGI TGTACA 1 cut(s) 3019
BsrI ACTGG 7 cut(s) 65, 227, 2105, 2437, 2743, 3708, 3906
BssECI CCNNGG 3 cut(s) 2233, 3672, 3867
BssNAI GTATAC 1 cut(s) 2643
BssNI GRCGYC 2 cut(s) 1117, 3180
BssT1I CCWWGG 3 cut(s) 2233, 3672, 3867
Bst1107I GTATAC 1 cut(s) 2643
Bst2UI CCWGG 1 cut(s) 3102
Bst6I CTCTTC 5 cut(s) 429, 736, 1733, 2034, 2718
BstACI GRCGYC 2 cut(s) 1117, 3180
BstAFI CTTAAG 1 cut(s) 2252
BstAPI GCANNNNNTGC 2 cut(s) 422, 1337
BstAUI TGTACA 1 cut(s) 3019
BstBI TTCGAA 2 cut(s) 1250, 3116
BstC8I GCNNGC 5 cut(s) 45, 161, 168, 2032, 3526
BstDSI CCRYGG 2 cut(s) 3672, 3867
BstMAI GTCTC 8 cut(s) 284, 713, 722, 786, 2126, 3007, 3899, 3980
BstMWI GCNNNNNNNGC 5 cut(s) 44, 422, 743, 1337, 2939
BstNI CCWGG 1 cut(s) 3102
BstNSI RCATGY 4 cut(s) 163, 170, 3431, 3528
BstSCI CCNGG 1 cut(s) 3100
BstSFI CTRYAG 4 cut(s) 302, 606, 1008, 2954
BstV1I GCAGC 5 cut(s) 175, 409, 461, 478, 1889
BstV2I GAAGAC 9 cut(s) 827, 974, 1562, 1965, 2271, 2474, 2492, 2942, 3570
BstX2I RGATCY 3 cut(s) 1070, 1780, 1832
BstXI CCANNNNNNTGG 1 cut(s) 2128
BstYI RGATCY 3 cut(s) 1070, 1780, 1832
BstZ17I GTATAC 1 cut(s) 2643
Bsu15I ATCGAT 2 cut(s) 816, 3881
BsuRI GGCC 5 cut(s) 470, 1507, 2823, 3124, 3677
BsuTUI ATCGAT 2 cut(s) 816, 3881
BtgI CCRYGG 2 cut(s) 3672, 3867
BtgZI GCGATG 1 cut(s) 1446
BtrI CACGTC 1 cut(s) 749
BtsIMutI CAGTG 4 cut(s) 139, 1059, 1331, 2943
BveI ACCTGC 2 cut(s) 71, 965
Cac8I GCNNGC 5 cut(s) 45, 161, 168, 2032, 3526
CaiI CAGNNNCTG 1 cut(s) 2341
Cfr13I GGNCC 5 cut(s) 214, 2230, 3444, 3518, 3802
ClaI ATCGAT 2 cut(s) 816, 3881
CseI GACGC 2 cut(s) 1125, 3565
DraI TTTAAA 3 cut(s) 1279, 1828, 2241
DriI GACNNNNNGTC 2 cut(s) 297, 778
EaeI YGGCCR 3 cut(s) 1505, 3122, 3675
Eam1104I CTCTTC 5 cut(s) 429, 736, 1733, 2034, 2718
Eam1105I GACNNNNNGTC 2 cut(s) 297, 778
EarI CTCTTC 5 cut(s) 429, 736, 1733, 2034, 2718
Eco130I CCWWGG 3 cut(s) 2233, 3672, 3867
Eco147I AGGCCT 1 cut(s) 470
Eco31I GGTCTC 3 cut(s) 284, 713, 722
Eco32I GATATC 2 cut(s) 2508, 3663
Eco47I GGWCC 5 cut(s) 214, 2230, 3444, 3518, 3802
Eco88I CYCGRG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 3444
EcoRI GAATTC 3 cut(s) 678, 3367, 3779
EcoRII CCWGG 1 cut(s) 3100
EcoRV GATATC 2 cut(s) 2508, 3663
EcoT14I CCWWGG 3 cut(s) 2233, 3672, 3867
EcoT22I ATGCAT 3 cut(s) 1419, 2197, 3349
ErhI CCWWGG 3 cut(s) 2233, 3672, 3867
Esp3I CGTCTC 2 cut(s) 3007, 3899
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 3457
FauNDI CATATG 2 cut(s) 418, 3058
FblI GTMKAC 4 cut(s) 301, 1879, 2642, 2671
Fnu4HI GCNGC 5 cut(s) 164, 423, 450, 492, 1903
Fsp4HI GCNGC 5 cut(s) 164, 423, 450, 492, 1903
GluI GCNGC 5 cut(s) 164, 423, 450, 492, 1903
GsaI CCCAGC 2 cut(s) 669, 3866
GsuI CTGGAG 1 cut(s) 3923
HaeIII GGCC 5 cut(s) 470, 1507, 2823, 3124, 3677
HgaI GACGC 2 cut(s) 1125, 3565
Hin1I GRCGYC 2 cut(s) 1117, 3180
HincII GTYRAC 1 cut(s) 2835
HindII GTYRAC 1 cut(s) 2835
HindIII AAGCTT 4 cut(s) 326, 948, 1807, 1942
HphI GGTGA 7 cut(s) 626, 989, 1205, 2110, 2203, 2440, 2723
Hpy99I CGWCG 2 cut(s) 753, 3844
HpyAV CCTTC 7 cut(s) 490, 1719, 1994, 2321, 2618, 3235, 3616
HpyCH4IV ACGT 8 cut(s) 748, 1311, 2497, 2751, 3180, 3266, 3279, 3908
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 422, 743, 1337, 2939
HpySE526I ACGT 8 cut(s) 748, 1311, 2497, 2751, 3180, 3266, 3279, 3908
Hsp92I GRCGYC 2 cut(s) 1117, 3180
KflI GGGWCCC 1 cut(s) 3444
LguI GCTCTTC 2 cut(s) 736, 2034
LmnI GCTCC 4 cut(s) 146, 1201, 2596, 3744
Lsp1109I GCAGC 5 cut(s) 175, 409, 461, 478, 1889
LweI GCATC 3 cut(s) 678, 2065, 3678
MaeII ACGT 8 cut(s) 748, 1311, 2497, 2751, 3180, 3266, 3279, 3908
MaeIII GTNAC 9 cut(s) 134, 1057, 1178, 1627, 2320, 2428, 2906, 3126, 3133
MfeI CAATTG 5 cut(s) 30, 1187, 2678, 2706, 3942
MflI RGATCY 3 cut(s) 1070, 1780, 1832
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 2 cut(s) 1507, 3677
MluNI TGGCCA 2 cut(s) 1507, 3677
MlyI GAGTC 6 cut(s) 1511, 1750, 2013, 2430, 3838, 3962
MmeI TCCRAC 6 cut(s) 124, 1110, 1869, 2109, 2403, 2785
Mox20I TGGCCA 2 cut(s) 1507, 3677
Mph1103I ATGCAT 3 cut(s) 1419, 2197, 3349
MroXI GAANNNNTTC 3 cut(s) 1084, 1920, 2331
MscI TGGCCA 2 cut(s) 1507, 3677
MslI CAYNNNNRTG 1 cut(s) 2352
Msp20I TGGCCA 2 cut(s) 1507, 3677
MspA1I CMGCKG 2 cut(s) 244, 491
MspCI CTTAAG 1 cut(s) 2252
MspR9I CCNGG 1 cut(s) 3102
MunI CAATTG 5 cut(s) 30, 1187, 2678, 2706, 3942
Mva1269I GAATGC 3 cut(s) 1419, 3109, 3486
MvaI CCWGG 1 cut(s) 3102
MwoI GCNNNNNNNGC 5 cut(s) 44, 422, 743, 1337, 2939
NcoI CCATGG 2 cut(s) 3672, 3867
NdeI CATATG 2 cut(s) 418, 3058
NheI GCTAGC 1 cut(s) 43
NlaIV GGNNCC 5 cut(s) 148, 215, 1834, 3445, 3446
NmuCI GTSAC 5 cut(s) 134, 1057, 2428, 2906, 3126
NsiI ATGCAT 3 cut(s) 1419, 2197, 3349
NspI RCATGY 4 cut(s) 163, 170, 3431, 3528
NspV TTCGAA 2 cut(s) 1250, 3116
PaeI GCATGC 3 cut(s) 163, 170, 3528
PaeR7I CTCGAG 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 965
PceI AGGCCT 1 cut(s) 470
PciSI GCTCTTC 2 cut(s) 736, 2034
PcsI WCGNNNNNNNCGW 3 cut(s) 717, 1247, 3122
PctI GAATGC 3 cut(s) 1419, 3109, 3486
PdmI GAANNNNTTC 3 cut(s) 1084, 1920, 2331
PflMI CCANNNNNTGG 1 cut(s) 2666
PfoI TCCNGGA 1 cut(s) 3100
PkrI GCNGC 5 cut(s) 165, 424, 451, 493, 1904
PleI GAGTC 6 cut(s) 1511, 1749, 2012, 2430, 3838, 3962
PpsI GAGTC 6 cut(s) 1511, 1749, 2012, 2430, 3838, 3962
PpuMI RGGWCCY 1 cut(s) 3444
PsiI TTATAA 1 cut(s) 594
Psp1406I AACGTT 1 cut(s) 3266
Psp5II RGGWCCY 1 cut(s) 3444
Psp6I CCWGG 1 cut(s) 3100
PspFI CCCAGC 2 cut(s) 665, 3862
PspGI CCWGG 1 cut(s) 3100
PspN4I GGNNCC 5 cut(s) 148, 215, 1834, 3445, 3446
PspPI GGNCC 5 cut(s) 214, 2230, 3444, 3518, 3802
PspPPI RGGWCCY 1 cut(s) 3444
PsrI GAACNNNNNNTAC 4 cut(s) 54, 86, 997, 1029
PstNI CAGNNNCTG 1 cut(s) 2341
PsuI RGATCY 3 cut(s) 1070, 1780, 1832
PvuII CAGCTG 2 cut(s) 244, 491
RseI CAYNNNNRTG 1 cut(s) 2352
SapI GCTCTTC 2 cut(s) 736, 2034
SatI GCNGC 5 cut(s) 164, 423, 450, 492, 1903
Sau96I GGNCC 5 cut(s) 214, 2230, 3444, 3518, 3802
ScaI AGTACT 1 cut(s) 2014
SchI GAGTC 6 cut(s) 1511, 1750, 2013, 2430, 3838, 3962
ScrFI CCNGG 1 cut(s) 3102
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 3 cut(s) 678, 2065, 3678
SfcI CTRYAG 4 cut(s) 302, 606, 1008, 2954
Sfr274I CTCGAG 1 cut(s) 710
SfuI TTCGAA 2 cut(s) 1250, 3116
SinI GGWCC 5 cut(s) 214, 2230, 3444, 3518, 3802
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 1 cut(s) 2352
SmlI CTYRAG 9 cut(s) 366, 710, 1673, 1963, 2252, 2632, 3236, 3374, 3970
SmoI CTYRAG 9 cut(s) 366, 710, 1673, 1963, 2252, 2632, 3236, 3374, 3970
SpeI ACTAGT 1 cut(s) 883
SphI GCATGC 3 cut(s) 163, 170, 3528
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 3 cut(s) 3477, 3484, 3597
SspI AATATT 5 cut(s) 412, 861, 1000, 3171, 3738
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 3100
StyI CCWWGG 3 cut(s) 2233, 3672, 3867
TaiI ACGT 8 cut(s) 751, 1314, 2500, 2754, 3183, 3269, 3282, 3911
TatI WGTACW 5 cut(s) 51, 2012, 3019, 3155, 3893
TscAI CASTG 4 cut(s) 139, 1066, 1338, 2943
TseFI GTSAC 5 cut(s) 134, 1057, 2428, 2906, 3126
TseI GCWGC 5 cut(s) 163, 422, 449, 491, 1902
Tsp45I GTSAC 5 cut(s) 134, 1057, 2428, 2906, 3126
TspRI CASTG 4 cut(s) 139, 1066, 1338, 2943
Van91I CCANNNNNTGG 1 cut(s) 2666
Vha464I CTTAAG 1 cut(s) 2252
VpaK11BI GGWCC 5 cut(s) 214, 2230, 3444, 3518, 3802
XbaI TCTAGA 3 cut(s) 1726, 2863, 2881
XceI RCATGY 4 cut(s) 163, 170, 3431, 3528
XcmI CCANNNNNNNNNTGG 1 cut(s) 2147
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 4 cut(s) 301, 1879, 2642, 2671
XmnI GAANNNNTTC 3 cut(s) 1084, 1920, 2331
ZraI GACGTC 1 cut(s) 3181
ZrmI AGTACT 1 cut(s) 2014
Zsp2I ATGCAT 3 cut(s) 1419, 2197, 3349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.