Rmu_sc0003347.1_g000013

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003347.1
OG0000042
Physical Location & Seq
Forward (+)
81225 .. 91830
10606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003347.1_g000013.1.cds

Sequence Viewer

Length: 4035 bp
ctgcggactaaattgaaggaattaagtgctgccagaggtgacgttcaacttgaggaggatcaagttacgagagaaggtaaaaaaatcgggactattgttctgaactggaagacagatgtggatgcaatcatcacagaggcagaggaattcctggaagacggccgccatgagcagaccgagtgtcttcatggtttttgtcctcatttggtgctccgttatcaactaagcaagaaatcaacaaaattggtggaggagattgatgaactttatggaaaaaaggagttctctcactttggatatgatgttcctctacaagatccatatctcttatctaccgggcattaccatgcatttgattcaagaaattcaactgtgatgaaagtcatggatgaacttagaaatcctaatacagaaatgattctggtgtggggaatcggtggagtagggaagaccacacttgtggaagaagttcgtaggaaagctaaggacgacaacttatttgatgatgtggtgatggtgagagatgttaaagagaacccagaccttgaaaaaatccaaaaagaaattgccacaaagttaggtatgagcatcaacgaaaatcagactctagctgaaagagccccctttctatgtactaggataaaagaaaaaaggactcttgtagttttggatgatgtttgggaaaaaattgatctggtggctgtcggacttccccgcttggttaattgtaaagtagtgttgacaagtagaagccgaaaggaattgtcgttggatatgcgtacacagattgatatttcccttgatgttttaaatgaagaggaagcatggagtttatttgagaagatggctggtgatgttgtcaaagatagccgcatacgaagcgtagcaattgaagtagccaaaaaatgtggacgtttgccggtcttgattgttacggttgcaagagctcgaaaagacacaaacaatattcgtacatggagagacaccttgagacgccttggagactttgacaacaaagaacttacagaaaaagcatacttggctctggagtggagttacgaccaattggaagataaagagcttaaaccgttgttcttgctttgtgggattattgcagttaagaaccatatttatttggcagacttgttgaaatatggttttgttttgggtttgataaaaaatgtctatacaatagaagaagcacgagatgcattggatccactggttgaaaagcttaaagattcttgcttgttgctggacagtgatatcaatatgcatgttagaatgcatgatctcgtatgcgaggttgctgcgtggattgcatccagaaaacaccacgtcttatcagttgggtatggtggtgaattgaaagaatggcctgagaaagatttctttaaaaggtgcagtacgatgtccttaaaatccagcaatattcccatgctttctcaactatctggggaatgccagaaactagaaatgttttatttgtacaataaaggtgttgcatcggtggaaatcccagccaacttttttagtgaaatggagaaactgaaggtattgggtttaactgaagtggatatggtgtcactacccccatctcttcgactcttgaagaatcttcagacattgtgtttagaagaatgtctgttggaagaggtagctctggttggacatctatgtaacttagagattcttagcttttcgaggtccaacattaaagtgctacccgaagaaatggggcaattgactcgactgagatggttggatttgagtgattgtgatgagcttgaagtgatttcacctaatgttatttcaaggttaaaaagactagaagacttgacgttgagaaacgtctttctcaaatgggaggctgaaaaaggaggaagtaatgctagtcttttagagctgaaagacttgtctcaactaactgcattggagatatatattgaagatgcaaatattcttccatcatacttgttctccagtaggttggtaagataccaaatatatattggcaatgtttggaagcaccgatatgaaagaaagaagactatggctgaaacgaccctcaacacgctaaaactgaagctcgctcccagcgatgaattggaccacggtataaaaacattgttgaagatatctgaagatttgtctttggatggaacagagagtgttaatagtattgtccgtcaattagatgttgaagattttcagcaactgatacacctccgtctccaaaacaatgttgatttcacctatatcattaataggaaggttgtgttccccaacttaacaaccttgagcatatgtagctgtgaccatctaagtttcttgttctcattttctatggctaaaagtttggtggagctcaaacatcttgaagtatccagttgtgaaataatggaagagatagtatcagcaagggatcaatccaacggagaaaatatcgatatcatgttttgtaagttggaaagtctaatactgaatgaactcccaaacatcactagattctgtactgaaagttgtactgaattttctcctgtgacgaaatttgatacggaattggggccatccatctttgatcctacgagtagtaaaaaacttgatgtcgagaatgggactgttgtacgagcatgtctttttgacgcacaggtaaaatttctgagcttggagagactgaaaatcgatgggctagggaagttgcacacgctatggaacaataaatttgctgatcaagactctttttgccaactcaaagtagttagagtttcaaattgcaacagtctgaaaaagatctttccagtttcagtagccagacgtctccaaaagctacattcgctggatgtgacagggtgtgatgaagtggaggaaatcattattggtgaacaaggactagaaacagagtctcctcatttagtgttcccaaaagtaacacgtgtgacattttatggtctgcccaaactaggtagattctatcttgggattattgcttccaagtggccgttactcaaacaactaaacattaatggatgtgggaaagtgaagatgtttgccgcagaacttccaatttcttcagaaagacatgagccgaaccctctaattgaacaatctctctttctaattgacaaggattcattccccaatttagaagacttggatctacaagttgcgggtgagatttggtacggtccatcatcatccccagcacagttctttcccaaattaaaaactattcgctttttcgagtgggcagcgttgtccaagcaagccgcaatacatttccttgagaaattacccaatcttgaggggatacaagtgtgttgggatgatgtttccacggaaatatttgtgaatgaagaaattaatggcggtgaggagatacatgcagtaaaaaagttgagggtctataggatgcccaagctcttgcaattagggaatgggaactctcaaacagcgggcccacttttcccaaacttggccactcttcaggtgcttgattgtgagatgttaaagagtgtagagtcatccgcaatatccttccgcaatctaacaactctgattgtatttggttgtggtggattggaatacttgacaagttattccgtagctaagagcttaatgcaactgacaacactggatgtgagctgttgtctaaacatgagagcaattataggggcaagcaacgaagatgatcatgatacaggagcaacttgtgagattgctttcacccggttgcaacatttgacacttgcgtggctttatagtttgcaaggcttttgctcgggaaattgcattgtcaaactcccatcctcaacaaagttaacagtcattggctgcgggattgagttgaatatttcttctgaaggggtcctgctcagtaatccaaaaccagaaagagtagaaatagcaaaaccagaaatagcggaggaggtagatgataatggtgacggagaaaaagaaaaagatgaggatgttggcacgaggtggcagtgccaagaagagaaatgtgttgctggttgtttcctacccagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1344

Amino Acids

152.2

Weight (kDa)

5.3

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2821
AclWI GGATC 7 cut(s) 66, 311, 1211, 1224, 2433, 2576, 3165
AcoI YGGCCR 3 cut(s) 160, 2999, 3477
AcsI RAATTY 6 cut(s) 146, 364, 2531, 2549, 2657, 2723
AcuI CTGAAG 8 cut(s) 1571, 1590, 1604, 2105, 2163, 3057, 3470, 3882
AcvI CACGTG 1 cut(s) 2936
AcyI GRCGYC 2 cut(s) 994, 2818
AdeI CACNNNGTG 1 cut(s) 3984
AfaI GTAC 9 cut(s) 634, 781, 973, 1408, 1490, 2515, 2527, 2628, 3185
AfiI CCNNNNNNNGG 2 cut(s) 2963, 3475
AflIII ACRYGT 2 cut(s) 2933, 2935
AhdI GACNNNNNGTC 1 cut(s) 180
AjiI CACGTC 1 cut(s) 1339
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 2862, 2894
AleI CACNNNNGTG 2 cut(s) 458, 3751
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
Alw21I GWGCWC 3 cut(s) 213, 949, 2370
Alw26I GTCTC 8 cut(s) 975, 985, 996, 1923, 2237, 2668, 2825, 2910
AlwI GGATC 7 cut(s) 66, 311, 1211, 1224, 2433, 2576, 3165
AlwNI CAGNNNCTG 1 cut(s) 2218
Ama87I CYCGRG 1 cut(s) 3781
AoxI GGCC 6 cut(s) 160, 1376, 2567, 2999, 3457, 3477
ApaI GGGCCC 1 cut(s) 3461
ApeKI GCWGC 4 cut(s) 29, 1310, 3251, 3834
ApoI RAATTY 6 cut(s) 146, 364, 2531, 2549, 2657, 2723
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AseI ATTAAT 3 cut(s) 2265, 3024, 3363
Asp700I GAANNNNTTC 4 cut(s) 417, 468, 1388, 2208
AspS9I GGNCC 7 cut(s) 1707, 2110, 2567, 3188, 3457, 3458, 3868
AsuC2I CCSGG 2 cut(s) 337, 3730
AvaI CYCGRG 1 cut(s) 3781
AvaII GGWCC 4 cut(s) 1707, 2110, 3188, 3868
BaeGI GKGCMC 1 cut(s) 3461
BaeI ACNNNNGTAYC 2 cut(s) 3302, 3335
BalI TGGCCA 1 cut(s) 3479
BamHI GGATCC 1 cut(s) 1216
BanII GRGCYC 4 cut(s) 622, 949, 2370, 3461
BauI CACGAG 2 cut(s) 1203, 3979
BbrPI CACGTG 1 cut(s) 2936
BbsI GAAGAC 7 cut(s) 116, 162, 176, 455, 1839, 2054, 3156
Bbv12I GWGCWC 3 cut(s) 213, 949, 2370
BbvI GCAGC 4 cut(s) 16, 1297, 3263, 3821
BceAI ACGGC 2 cut(s) 175, 2986
BcgI CGANNNNNNTGC 4 cut(s) 1292, 1326, 1730, 1764
BciT130I CCWGG 1 cut(s) 152
BciVI GTATCC 2 cut(s) 2395, 3303
BclI TGATCA 2 cut(s) 2731, 3691
BcnI CCSGG 2 cut(s) 337, 3730
BcoDI GTCTC 8 cut(s) 975, 985, 996, 1923, 2237, 2668, 2825, 2910
BfaI CTAG 9 cut(s) 608, 636, 1472, 1829, 1893, 2505, 2693, 2894, 2963
BfmI CTRYAG 1 cut(s) 3406
BfuI GTATCC 2 cut(s) 2395, 3303
BglII AGATCT 1 cut(s) 2793
BisI GCNGC 8 cut(s) 30, 163, 871, 1311, 3054, 3252, 3270, 3835
BlsI GCNGC 8 cut(s) 31, 164, 872, 1312, 3055, 3253, 3271, 3836
Bme1390I CCNGG 3 cut(s) 152, 337, 3730
Bme18I GGWCC 4 cut(s) 1707, 2110, 3188, 3868
BmeRI GACNNNNNGTC 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 3781
BmgBI CACGTC 1 cut(s) 1339
BmgT120I GGNCC 7 cut(s) 1707, 2110, 2567, 3188, 3457, 3458, 3868
BmiI GGNNCC 4 cut(s) 1218, 2568, 3459, 3869
BmrFI CCNGG 3 cut(s) 152, 337, 3730
BmsI GCATC 7 cut(s) 112, 597, 1198, 1331, 1514, 1942, 3402
BpiI GAAGAC 7 cut(s) 116, 162, 176, 455, 1839, 2054, 3156
BpmI CTGGAG 2 cut(s) 1067, 1966
Bpu10I CCTNAGC 1 cut(s) 483
BpuEI CTTGAG 5 cut(s) 71, 1009, 2320, 3305, 3323
BpuMI CCSGG 2 cut(s) 337, 3730
Bsa29I ATCGAT 2 cut(s) 2448, 2685
BsaAI YACGTR 1 cut(s) 2936
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 2 cut(s) 994, 2818
BsaJI CCNNGG 3 cut(s) 997, 2113, 3336
BsaXI ACNNNNNCTCC 4 cut(s) 1964, 1994, 2890, 2920
Bsc4I CCNNNNNNNGG 2 cut(s) 2963, 3475
Bse118I RCCGGY 1 cut(s) 919
Bse1I ACTGG 6 cut(s) 110, 1227, 1983, 2388, 2801, 3639
Bse3DI GCAATG 1 cut(s) 2023
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 2 cut(s) 2448, 2685
BseDI CCNNGG 3 cut(s) 997, 2113, 3336
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 2963, 3475
BseMI GCAATG 1 cut(s) 2023
BseMII CTCAG 4 cut(s) 1371, 1745, 2654, 3889
BseNI ACTGG 6 cut(s) 110, 1227, 1983, 2388, 2801, 3639
BseRI GAGGAG 5 cut(s) 68, 266, 2898, 3389, 3941
BseSI GKGCMC 1 cut(s) 3461
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 4 cut(s) 16, 1297, 3263, 3821
BseYI CCCAGC 3 cut(s) 1519, 2096, 3202
BsgI GTGCAG 1 cut(s) 1423
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 6 cut(s) 162, 1378, 2569, 3001, 3459, 3479
BshVI ATCGAT 2 cut(s) 2448, 2685
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 3 cut(s) 213, 949, 2370
BsiHKCI CYCGRG 1 cut(s) 3781
BsiSI CCGG 3 cut(s) 336, 920, 3730
BslFI GGGAC 2 cut(s) 103, 2632
BslI CCNNNNNNNGG 2 cut(s) 2963, 3475
BsmAI GTCTC 8 cut(s) 975, 985, 996, 1923, 2237, 2668, 2825, 2910
BsmBI CGTCTC 3 cut(s) 985, 2237, 2825
BsmFI GGGAC 2 cut(s) 103, 2632
BsmI GAATGC 2 cut(s) 1290, 1466
BsnI GGCC 6 cut(s) 162, 1378, 2569, 3001, 3459, 3479
BsoBI CYCGRG 1 cut(s) 3781
Bsp120I GGGCCC 1 cut(s) 3457
Bsp1286I GDGCHC 5 cut(s) 213, 622, 949, 2370, 3461
Bsp1407I TGTACA 1 cut(s) 1488
BspANI GGCC 6 cut(s) 162, 1378, 2569, 3001, 3459, 3479
BspCNI CTCAG 4 cut(s) 1372, 1746, 2655, 3888
BspDI ATCGAT 2 cut(s) 2448, 2685
BspHI TCATGA 1 cut(s) 3694
BspLI GGNNCC 4 cut(s) 1218, 2568, 3459, 3869
BspPI GGATC 7 cut(s) 66, 311, 1211, 1224, 2433, 2576, 3165
BsrDI GCAATG 1 cut(s) 2023
BsrFI RCCGGY 1 cut(s) 919
BsrGI TGTACA 1 cut(s) 1488
BsrI ACTGG 6 cut(s) 110, 1227, 1983, 2388, 2801, 3639
BssAI RCCGGY 1 cut(s) 919
BssECI CCNNGG 3 cut(s) 997, 2113, 3336
BssNI GRCGYC 2 cut(s) 994, 2818
BssSI CACGAG 2 cut(s) 1203, 3979
BssT1I CCWWGG 1 cut(s) 997
Bst2BI CACGAG 2 cut(s) 1203, 3979
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 6 cut(s) 810, 1605, 1647, 2400, 3489, 3993
BstACI GRCGYC 2 cut(s) 994, 2818
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstAUI TGTACA 1 cut(s) 1488
BstBAI YACGTR 1 cut(s) 2936
BstC8I GCNNGC 4 cut(s) 2091, 3267, 3457, 3679
BstDSI CCRYGG 2 cut(s) 2113, 3336
BstMAI GTCTC 8 cut(s) 975, 985, 996, 1923, 2237, 2668, 2825, 2910
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 7 cut(s) 617, 879, 1040, 1208, 1319, 2310, 2836
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 3 cut(s) 1280, 2637, 3386
BstSCI CCNGG 3 cut(s) 150, 335, 3728
BstSFI CTRYAG 1 cut(s) 3406
BstSLI GKGCMC 1 cut(s) 3461
BstV1I GCAGC 4 cut(s) 16, 1297, 3263, 3821
BstV2I GAAGAC 7 cut(s) 116, 162, 176, 455, 1839, 2054, 3156
BstX2I RGATCY 4 cut(s) 316, 1216, 2793, 3157
BstXI CCANNNNNNTGG 2 cut(s) 460, 1990
BstYI RGATCY 4 cut(s) 316, 1216, 2793, 3157
BstZI CGGCCG 1 cut(s) 160
Bsu15I ATCGAT 2 cut(s) 2448, 2685
BsuI GTATCC 2 cut(s) 2395, 3303
BsuRI GGCC 6 cut(s) 162, 1378, 2569, 3001, 3459, 3479
BsuTUI ATCGAT 2 cut(s) 2448, 2685
BtgI CCRYGG 2 cut(s) 2113, 3336
BtgZI GCGATG 1 cut(s) 2115
BtrI CACGTC 1 cut(s) 1339
BtsI GCAGTG 1 cut(s) 3995
BtsIMutI CAGTG 4 cut(s) 1220, 1267, 3632, 3995
Cac8I GCNNGC 4 cut(s) 2091, 3267, 3457, 3679
CaiI CAGNNNCTG 1 cut(s) 2218
CciI TCATGA 1 cut(s) 3694
Cfr10I RCCGGY 1 cut(s) 919
Cfr13I GGNCC 7 cut(s) 1707, 2110, 2567, 3188, 3457, 3458, 3868
ClaI ATCGAT 2 cut(s) 2448, 2685
CseI GACGC 2 cut(s) 1002, 2654
Csp6I GTAC 9 cut(s) 633, 780, 972, 1407, 1489, 2514, 2526, 2627, 3184
CspCI CAANNNNNGTGG 4 cut(s) 228, 263, 889, 924
CviQI GTAC 9 cut(s) 633, 780, 972, 1407, 1489, 2514, 2526, 2627, 3184
DraI TTTAAA 2 cut(s) 810, 1396
DraIII CACNNNGTG 1 cut(s) 3984
DriI GACNNNNNGTC 1 cut(s) 180
EaeI YGGCCR 3 cut(s) 160, 2999, 3477
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 6 cut(s) 810, 1605, 1647, 2400, 3489, 3993
Eam1105I GACNNNNNGTC 1 cut(s) 180
EarI CTCTTC 6 cut(s) 810, 1605, 1647, 2400, 3489, 3993
Ecl136II GAGCTC 2 cut(s) 947, 2368
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 997
Eco24I GRGCYC 4 cut(s) 622, 949, 2370, 3461
Eco32I GATATC 3 cut(s) 1267, 2139, 2452
Eco47I GGWCC 4 cut(s) 1707, 2110, 3188, 3868
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 2 cut(s) 947, 2368
Eco57I CTGAAG 8 cut(s) 1571, 1590, 1604, 2105, 2163, 3057, 3470, 3882
Eco72I CACGTG 1 cut(s) 2936
Eco88I CYCGRG 1 cut(s) 3781
EcoICRI GAGCTC 2 cut(s) 947, 2368
EcoO109I RGGNCCY 1 cut(s) 3868
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 150
EcoRV GATATC 3 cut(s) 1267, 2139, 2452
EcoT14I CCWWGG 1 cut(s) 997
EcoT22I ATGCAT 4 cut(s) 352, 1213, 1278, 1290
EcoT38I GRGCYC 4 cut(s) 622, 949, 2370, 3461
ErhI CCWWGG 1 cut(s) 997
Esp3I CGTCTC 3 cut(s) 985, 2237, 2825
FaqI GGGAC 2 cut(s) 103, 2632
FauI CCCGC 4 cut(s) 722, 3163, 3448, 3830
FauNDI CATATG 1 cut(s) 2306
FbaI TGATCA 2 cut(s) 2731, 3691
Fnu4HI GCNGC 8 cut(s) 30, 163, 871, 1311, 3054, 3252, 3270, 3835
FriOI GRGCYC 4 cut(s) 622, 949, 2370, 3461
Fsp4HI GCNGC 8 cut(s) 30, 163, 871, 1311, 3054, 3252, 3270, 3835
FspBI CTAG 9 cut(s) 608, 636, 1472, 1829, 1893, 2505, 2693, 2894, 2963
GluI GCNGC 8 cut(s) 30, 163, 871, 1311, 3054, 3252, 3270, 3835
GsaI CCCAGC 3 cut(s) 1523, 2100, 3206
GsuI CTGGAG 2 cut(s) 1067, 1966
HaeIII GGCC 6 cut(s) 162, 1378, 2569, 3001, 3459, 3479
HapII CCGG 3 cut(s) 336, 920, 3730
HgaI GACGC 2 cut(s) 1002, 2654
Hin1I GRCGYC 2 cut(s) 994, 2818
HincII GTYRAC 2 cut(s) 741, 3822
HindII GTYRAC 2 cut(s) 741, 3822
HindIII AAGCTT 1 cut(s) 1232
HpaI GTTAAC 1 cut(s) 3822
HpaII CCGG 3 cut(s) 336, 920, 3730
Hpy166II GTNNAC 5 cut(s) 741, 782, 911, 2885, 3822
Hpy8I GTNNAC 5 cut(s) 741, 782, 911, 2885, 3822
HpyAV CCTTC 6 cut(s) 10, 68, 1546, 2266, 3547, 3857
HpyCH4IV ACGT 7 cut(s) 42, 913, 1338, 1841, 1851, 2818, 2935
HpyF10VI GCNNNNNNNGC 7 cut(s) 617, 879, 1040, 1208, 1319, 2310, 2836
HpySE526I ACGT 7 cut(s) 42, 913, 1338, 1841, 1851, 2818, 2935
Hsp92I GRCGYC 2 cut(s) 994, 2818
Ksp22I TGATCA 2 cut(s) 2731, 3691
KspAI GTTAAC 1 cut(s) 3822
LmnI GCTCC 4 cut(s) 216, 2098, 2365, 3704
Lsp1109I GCAGC 4 cut(s) 16, 1297, 3263, 3821
LweI GCATC 7 cut(s) 112, 597, 1198, 1331, 1514, 1942, 3402
MaeI CTAG 9 cut(s) 608, 636, 1472, 1829, 1893, 2505, 2693, 2894, 2963
MaeII ACGT 7 cut(s) 42, 913, 1338, 1841, 1851, 2818, 2935
MfeI CAATTG 3 cut(s) 888, 1064, 1742
MflI RGATCY 4 cut(s) 316, 1216, 2793, 3157
MhlI GDGCHC 5 cut(s) 213, 622, 949, 2370, 3461
MlsI TGGCCA 1 cut(s) 3479
MluNI TGGCCA 1 cut(s) 3479
MlyI GAGTC 7 cut(s) 598, 649, 1599, 1741, 2732, 2912, 3530
MmeI TCCRAC 8 cut(s) 685, 750, 1629, 1648, 1734, 1743, 2448, 2457
Mox20I TGGCCA 1 cut(s) 3479
Mph1103I ATGCAT 4 cut(s) 352, 1213, 1278, 1290
MroXI GAANNNNTTC 4 cut(s) 417, 468, 1388, 2208
MscI TGGCCA 1 cut(s) 3479
MslI CAYNNNNRTG 5 cut(s) 345, 458, 1718, 2034, 3751
Msp20I TGGCCA 1 cut(s) 3479
MspA1I CMGCKG 1 cut(s) 3455
MspI CCGG 3 cut(s) 336, 920, 3730
MspR9I CCNGG 3 cut(s) 152, 337, 3730
MunI CAATTG 3 cut(s) 888, 1064, 1742
Mva1269I GAATGC 2 cut(s) 1290, 1466
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 7 cut(s) 617, 879, 1040, 1208, 1319, 2310, 2836
NciI CCSGG 2 cut(s) 337, 3730
NdeI CATATG 1 cut(s) 2306
NlaIV GGNNCC 4 cut(s) 1218, 2568, 3459, 3869
NmuCI GTSAC 7 cut(s) 38, 1584, 2315, 2542, 2845, 2938, 3944
NsiI ATGCAT 4 cut(s) 352, 1213, 1278, 1290
NspI RCATGY 3 cut(s) 1280, 2637, 3386
OliI CACNNNNGTG 2 cut(s) 458, 3751
PagI TCATGA 1 cut(s) 3694
PcsI WCGNNNNNNNCGW 1 cut(s) 2097
PctI GAATGC 2 cut(s) 1290, 1466
PdmI GAANNNNTTC 4 cut(s) 417, 468, 1388, 2208
PfeI GAWTC 9 cut(s) 356, 418, 432, 1241, 1615, 1690, 2508, 2970, 3131
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 8 cut(s) 31, 164, 872, 1312, 3055, 3253, 3271, 3836
PleI GAGTC 7 cut(s) 598, 649, 1599, 1741, 2732, 2911, 3529
PmaCI CACGTG 1 cut(s) 2936
PmlI CACGTG 1 cut(s) 2936
PpsI GAGTC 7 cut(s) 598, 649, 1599, 1741, 2732, 2911, 3529
Ppu21I YACGTR 1 cut(s) 2936
PpuMI RGGWCCY 1 cut(s) 3868
PshBI ATTAAT 3 cut(s) 2265, 3024, 3363
Psp124BI GAGCTC 2 cut(s) 949, 2370
Psp5II RGGWCCY 1 cut(s) 3868
Psp6I CCWGG 1 cut(s) 150
PspCI CACGTG 1 cut(s) 2936
PspFI CCCAGC 3 cut(s) 1519, 2096, 3202
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 4 cut(s) 1218, 2568, 3459, 3869
PspOMI GGGCCC 1 cut(s) 3457
PspPI GGNCC 7 cut(s) 1707, 2110, 2567, 3188, 3457, 3458, 3868
PspPPI RGGWCCY 1 cut(s) 3868
PstNI CAGNNNCTG 1 cut(s) 2218
PsuI RGATCY 4 cut(s) 316, 1216, 2793, 3157
RsaI GTAC 9 cut(s) 634, 781, 973, 1408, 1490, 2515, 2527, 2628, 3185
RsaNI GTAC 9 cut(s) 633, 780, 972, 1407, 1489, 2514, 2526, 2627, 3184
RseI CAYNNNNRTG 5 cut(s) 345, 458, 1718, 2034, 3751
SacI GAGCTC 2 cut(s) 949, 2370
SatI GCNGC 8 cut(s) 30, 163, 871, 1311, 3054, 3252, 3270, 3835
Sau96I GGNCC 7 cut(s) 1707, 2110, 2567, 3188, 3457, 3458, 3868
SchI GAGTC 7 cut(s) 598, 649, 1599, 1741, 2732, 2912, 3530
ScrFI CCNGG 3 cut(s) 152, 337, 3730
SduI GDGCHC 5 cut(s) 213, 622, 949, 2370, 3461
SfaNI GCATC 7 cut(s) 112, 597, 1198, 1331, 1514, 1942, 3402
SfcI CTRYAG 1 cut(s) 3406
SinI GGWCC 4 cut(s) 1707, 2110, 3188, 3868
SmiMI CAYNNNNRTG 5 cut(s) 345, 458, 1718, 2034, 3751
SmlI CTYRAG 5 cut(s) 50, 988, 2299, 3284, 3302
SmoI CTYRAG 5 cut(s) 50, 988, 2299, 3284, 3302
SspI AATATT 5 cut(s) 967, 1432, 1960, 3345, 3853
SspMI CTAG 9 cut(s) 608, 636, 1472, 1829, 1893, 2505, 2693, 2894, 2963
SstI GAGCTC 2 cut(s) 949, 2370
StyD4I CCNGG 3 cut(s) 150, 335, 3728
StyI CCWWGG 1 cut(s) 997
TaiI ACGT 7 cut(s) 45, 916, 1341, 1844, 1854, 2821, 2938
TaqI TCGA 8 cut(s) 949, 1603, 1703, 1750, 2448, 2610, 2685, 3243
TaqII GACCGA 1 cut(s) 191
TatI WGTACW 4 cut(s) 632, 1488, 2513, 2525
TauI GCSGC 4 cut(s) 165, 873, 3056, 3272
TfiI GAWTC 9 cut(s) 356, 418, 432, 1241, 1615, 1690, 2508, 2970, 3131
TscAI CASTG 4 cut(s) 1227, 1267, 3639, 3995
TseFI GTSAC 7 cut(s) 38, 1584, 2315, 2542, 2845, 2938, 3944
TseI GCWGC 4 cut(s) 29, 1310, 3251, 3834
Tsp45I GTSAC 7 cut(s) 38, 1584, 2315, 2542, 2845, 2938, 3944
TspGWI ACGGA 8 cut(s) 203, 2177, 2219, 2451, 2573, 3353, 3592, 3963
TspRI CASTG 4 cut(s) 1227, 1267, 3639, 3995
VpaK11BI GGWCC 4 cut(s) 1707, 2110, 3188, 3868
VspI ATTAAT 3 cut(s) 2265, 3024, 3363
XapI RAATTY 6 cut(s) 146, 364, 2531, 2549, 2657, 2723
XceI RCATGY 3 cut(s) 1280, 2637, 3386
XcmI CCANNNNNNNNNTGG 2 cut(s) 2009, 2104
XmnI GAANNNNTTC 4 cut(s) 417, 468, 1388, 2208
XspI CTAG 9 cut(s) 608, 636, 1472, 1829, 1893, 2505, 2693, 2894, 2963
ZraI GACGTC 1 cut(s) 2819
Zsp2I ATGCAT 4 cut(s) 352, 1213, 1278, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.