Rh5BG377500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
59820980 .. 59835137
14158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG377500.1

Sequence Viewer

Length: 2619 bp
ATGATGGACTTTATTACTTCTATTGTCTCTGGAGTTGTCGTAAAGATTGCTGAGACTATAGTCGTACCACTTTATCGCCAAGTGGGTTATGTTATTCACTACAAAAGCAACCTTCAAAATCTGAGGGATCAAGTGGAGAAGCTAGGTTGTGCTAAAGACAGGATGCAACACACTCTTGATGATGAGGTCAAAAGAAAAGGTAAAAGAGTTGAACGTGATGTTGAGAACTGGCTCATAAAAGTGGATGAGATCACTCAAGAGGCTGACGTTTTCTTGGAAGATGAACGCCATGCAAAGACCAAGTGTTTCCATGGATTTTGTCCTAATCCAATTCTTCGATATCGGCTCAGCAGGAAATCAACAAAATTGGTGCAGAAGATTCATCAATTCCATGAAAAAAGAGAATTTCCCACTGTTGCCTATCATGTCCCCCGACAAGATGTATGCAGCATTCAATCCCGAGATTACCTAGCTTTTGAATCAAGGCTTTCAATTGTGAAAGACATCATGGAGAAACTGAGAAATCCGGATACCAACATGATTGGGGTGTATGGAATTGGTGGTGTGGGTAAGACCACGCTCGCCAAAGAAGTCTATAGACAAGCTACAGAAGAGAAGTTATTTGATGATGTTATTATAGTACTAGATGTCAAACTCATTCCAGACTTGGAAAGACTTCAAAGGCAAATTCTTGAAAAGTTAGGTATAGAGGTTGTTGATGGTCAAAGTATAGCTATAAGAGCGTCTCTTCTATGGGATAGCATAAAAGACAAGAGGGTTCTTATCATTTTAGACGATGTTCCAGAAAGAATTGATTTGGAGACTATGGGTATTCTGAGTGTGCCAACTTGTAAGCTAATGGTCACAGCTAGAAATCGAAGAGTTTTATGCTCTGAGATGCGTACACAAGAGGATTTTCGGCTTGATGTTTTGGGAGAAACAGAAACTTGGAGTTTGTTTGAGAAGGTGGCCGGTGATATTGTTAAAGAAAACCCTATAAGAACAGTAGCCATAGAAGTTGCCAAGAAGTGTGGAGGTCTGCCAATTTTAGTGGTCGCTGTTGCAAGTGCCTTGAGAATTAGTACTTTACATGAGTGGAAGGATGCCTTGAGACGGTTAAAAAAGTTTGACATGAAAGAATTGGCAGAAAAAGCACTGTTAACTCTAGAGTGGAGTTACAATCAATTAGATGATGAAGAGCTTAAGCAACTATTCCTCCTTTGTGGAACTATTGCTTCGAGGGATCATGGGATATATCTCGATGACTGTTTCAAATATAGTATGGGATTGGGTTTGTTGAAAAAAGTGGATACAACGGAAGAAGCACAAGCTGCATTTCATTCATTAATTAAAAAGCTTCAAAATTATTGTTTGTTGCTAGAACAGCAAGACGGTATTAACTATACAACTGTCAGTATGCATGAGCTTGTCCGCAATGTTGCCAACATGATTGCACGCAGAGATCAGCACATCCTCTTAAGAGCATGTGAAGAGCAGCTTGAAGAATGGCCAAATAAGGCTTTCTTTGAAAAGTGCACTATGATCCATCTCTGTAGAGCCAATATTCCCACACTTCCTCAAGACCCTTGGCAATGTCAAGAACTAAAAATGTTTCACTTGTGTAGCTATATGTCGCTACAAATAGGGTCCAACTTTTTCGAAGAGATGAAAGAACTCAAAGTGGTAGATGTTAGGGGGCTTCGGATTCTATCACTTCCTTCATCTCTTCAGTTGCTAACAAATCTTCAAACTTTGTGTTTAGATGACTGCGTATTGAGAGACATAGCTCTAGTTGGACAACTAAGAAGTTTGAAAATTCTTAGTTTGTCGCGATCCAAACTTACACAGTTGCCTGAAGAAATGGGGCAACTTACCAATCTACAATTGTTGGATTTGACCGGTTGCTCAGAACTTGTACTGATTCCACCTAATGTTATAGCGAGCTTGAAAAGTCTTGAAGATTTGAGAATGGGAAGAAACAGCTTTAAGCAATGGGAGGCTGAAGGAATCGTGGGTGGCAAAAGAAGAACAAATTCTAGCCTTTCAGAGCTGAAGCAGTTGTCTAAGCTAACCGCATTAGACATCCATATTCCAGATGCTAGCGCTGTTCCATCAGGCTTGTTCTTGCACTTGGAAAGATATCATGTATTCATCGGTGAAGATTGGAAATGGCTTTCTTTTGATGATAGTTTCAACACGCTAAAGCTCAAGCTAGCAACGAGCAATCAATTGGACAGAGGTCTAGAGATGTTGGTGAAGAAATCTGAGCATTTCTACTTGGATGTAATGGAAGGTGTCAATGATATACTTCATTTATTAAATAGTGATGGTCATCAGCAACTGAAACATCTCCAAGTCCAAAACGATGCCGAGATTACATACGTCATCAATCACAACGTCTTCCAGAAATTACAATCTCTGAGATTGATGAATCTACCAAAGCTTGTTAGTTTCTCCTCCAACAGCAGAACAGCTGTTGTAACTACAACGACGGATGAGCAATTGAAGACTGATGAAGAGTGTAAAGAAATAATTTTGGAGAATGAGATCGAGAGTCCTGTGCAAACTTTCAAGAATGGAGAGGAAGGGTCGGGTACGACTAGAACTGAAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

872

Amino Acids

99.84

Weight (kDa)

6.01

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 166 - 325 4.1e-26 NB-ARC domain
AAA_22 PF13401 179 - 267 2.8e-06 AAA domain
LRR_14 PF23598 598 - 697 6.4e-09 Leucine-rich repeat region
LRR_8 PF13855 602 - 661 8.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1831
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 2 cut(s) 1432, 2073
AclWI GGATC 4 cut(s) 135, 1251, 1537, 1827
AcoI YGGCCR 2 cut(s) 969, 1508
AcsI RAATTY 4 cut(s) 404, 687, 1815, 2032
AcuI CTGAAG 4 cut(s) 1712, 1875, 2022, 2072
AfaI GTAC 6 cut(s) 66, 642, 904, 1084, 1917, 2596
AfeI AGCGCT 1 cut(s) 2104
AfiI CCNNNNNNNGG 1 cut(s) 1113
AflII CTTAAG 2 cut(s) 1202, 1477
AgeI ACCGGT 1 cut(s) 1898
Alw21I GWGCWC 1 cut(s) 1538
Alw26I GTCTC 6 cut(s) 31, 47, 750, 815, 1105, 1773
Alw44I GTGCAC 1 cut(s) 1534
AlwI GGATC 4 cut(s) 135, 1251, 1537, 1827
AlwNI CAGNNNCTG 1 cut(s) 2341
Ama87I CYCGRG 1 cut(s) 459
Aor13HI TCCGGA 1 cut(s) 526
Aor51HI AGCGCT 1 cut(s) 2104
AoxI GGCC 2 cut(s) 969, 1508
ApaLI GTGCAC 1 cut(s) 1534
ApeKI GCWGC 3 cut(s) 447, 1331, 1495
ApoI RAATTY 4 cut(s) 404, 687, 1815, 2032
AseI ATTAAT 1 cut(s) 1346
AsiGI ACCGGT 1 cut(s) 1898
Asp700I GAANNNNTTC 2 cut(s) 675, 2032
AspLEI GCGC 1 cut(s) 2105
AspS9I GGNCC 1 cut(s) 1647
AsuHPI GGTGA 3 cut(s) 986, 2168, 2266
AsuII TTCGAA 1 cut(s) 1659
AsuNHI GCTAGC 2 cut(s) 2099, 2212
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 1 cut(s) 1647
BaeGI GKGCMC 1 cut(s) 1538
BalI TGGCCA 1 cut(s) 1510
BbsI GAAGAC 2 cut(s) 2392, 2513
Bbv12I GWGCWC 1 cut(s) 1538
BbvI GCAGC 3 cut(s) 459, 1318, 1507
BccI CCATC 4 cut(s) 713, 1554, 2119, 2321
BciVI GTATCC 2 cut(s) 523, 1303
BcoDI GTCTC 6 cut(s) 31, 47, 750, 815, 1105, 1773
BfmI CTRYAG 4 cut(s) 57, 595, 606, 1552
BfoI RGCGCY 1 cut(s) 2106
BfrI CTTAAG 2 cut(s) 1202, 1477
BfuI GTATCC 2 cut(s) 523, 1303
BisI GCNGC 3 cut(s) 448, 1332, 1496
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 3 cut(s) 449, 1333, 1497
BmcAI AGTACT 2 cut(s) 642, 1084
Bme18I GGWCC 1 cut(s) 1647
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 1 cut(s) 1647
BmiI GGNNCC 1 cut(s) 1648
BmsI GCATC 5 cut(s) 153, 888, 1093, 2086, 2356
BmtI GCTAGC 2 cut(s) 2103, 2216
BoxI GACNNNNGTC 2 cut(s) 59, 2238
BpiI GAAGAC 2 cut(s) 2392, 2513
BpmI CTGGAG 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 1659
BpuEI CTTGAG 5 cut(s) 240, 1093, 1129, 1563, 2192
BsaBI GATNNNNATC 1 cut(s) 2331
BsaJI CCNNGG 2 cut(s) 310, 1586
BsaWI WCCGGW 2 cut(s) 526, 1898
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 1200, 1230
Bsc4I CCNNNNNNNGG 1 cut(s) 1113
Bse118I RCCGGY 2 cut(s) 971, 1898
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 3 cut(s) 1441, 1598, 1997
Bse8I GATNNNNATC 1 cut(s) 2331
BseAI TCCGGA 1 cut(s) 526
BseDI CCNNGG 2 cut(s) 310, 1586
BseGI GGATG 7 cut(s) 168, 250, 1108, 1470, 2082, 2287, 2500
BseJI GATNNNNATC 1 cut(s) 2331
BseLI CCNNNNNNNGG 1 cut(s) 1113
BseMI GCAATG 3 cut(s) 1441, 1598, 1997
BseMII CTCAG 9 cut(s) 42, 113, 361, 509, 827, 885, 1920, 2256, 2411
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 2446
BseSI GKGCMC 1 cut(s) 1538
BseXI GCAGC 3 cut(s) 459, 1318, 1507
BsgI GTGCAG 1 cut(s) 392
Bsh1236I CGCG 1 cut(s) 1831
BshFI GGCC 2 cut(s) 971, 1510
BshTI ACCGGT 1 cut(s) 1898
BsiHKAI GWGCWC 1 cut(s) 1538
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 527, 972, 1899
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 1113
BsmAI GTCTC 6 cut(s) 31, 47, 750, 815, 1105, 1773
BsmBI CGTCTC 2 cut(s) 750, 1105
BsmFI GGGAC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 2 cut(s) 971, 1510
BsoBI CYCGRG 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 1659
Bsp1286I GDGCHC 1 cut(s) 1538
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 310
Bsp68I TCGCGA 1 cut(s) 1831
BspACI CCGC 2 cut(s) 1432, 2073
BspANI GGCC 2 cut(s) 971, 1510
BspCNI CTCAG 9 cut(s) 43, 114, 360, 510, 828, 886, 1919, 2257, 2412
BspEI TCCGGA 1 cut(s) 526
BspFNI CGCG 1 cut(s) 1831
BspLI GGNNCC 1 cut(s) 1648
BspOI GCTAGC 2 cut(s) 2103, 2216
BspPI GGATC 4 cut(s) 135, 1251, 1537, 1827
BspQI GCTCTTC 2 cut(s) 1191, 1485
BspT104I TTCGAA 1 cut(s) 1659
BspTI CTTAAG 2 cut(s) 1202, 1477
BsrDI GCAATG 3 cut(s) 1441, 1598, 1997
BsrFI RCCGGY 2 cut(s) 971, 1898
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 2 cut(s) 971, 1898
BssECI CCNNGG 2 cut(s) 310, 1586
BssMI GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
BssT1I CCWWGG 2 cut(s) 310, 1586
Bst4CI ACNGT 8 cut(s) 415, 1006, 1116, 1158, 1268, 1394, 1411, 1848
Bst6I CTCTTC 8 cut(s) 606, 753, 874, 1191, 1485, 1656, 1731, 2511
BstAFI CTTAAG 2 cut(s) 1202, 1477
BstAPI GCANNNNNTGC 1 cut(s) 1331
BstBI TTCGAA 1 cut(s) 1659
BstC8I GCNNGC 5 cut(s) 582, 1456, 1942, 2101, 2214
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 7 cut(s) 168, 250, 1108, 1470, 2082, 2287, 2500
BstFNI CGCG 1 cut(s) 1831
BstH2I RGCGCY 1 cut(s) 2106
BstHHI GCGC 1 cut(s) 2105
BstKTI GATC 7 cut(s) 130, 252, 1246, 1465, 1545, 1835, 2550
BstMAI GTCTC 6 cut(s) 31, 47, 750, 815, 1105, 1773
BstMBI GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
BstMWI GCNNNNNNNGC 4 cut(s) 740, 1151, 1331, 1384
BstNSI RCATGY 1 cut(s) 1488
BstPAI GACNNNNGTC 2 cut(s) 59, 2238
BstSFI CTRYAG 4 cut(s) 57, 595, 606, 1552
BstSLI GKGCMC 1 cut(s) 1538
BstUI CGCG 1 cut(s) 1831
BstV1I GCAGC 3 cut(s) 459, 1318, 1507
BstV2I GAAGAC 2 cut(s) 2392, 2513
BsuI GTATCC 2 cut(s) 523, 1303
BsuRI GGCC 2 cut(s) 971, 1510
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 7 cut(s) 168, 250, 1108, 1470, 2082, 2287, 2500
BtsIMutI CAGTG 2 cut(s) 411, 1154
BtuMI TCGCGA 1 cut(s) 1831
Cac8I GCNNGC 5 cut(s) 582, 1456, 1942, 2101, 2214
CaiI CAGNNNCTG 1 cut(s) 2341
CfoI GCGC 1 cut(s) 2105
Cfr10I RCCGGY 2 cut(s) 971, 1898
Cfr13I GGNCC 1 cut(s) 1647
CseI GACGC 1 cut(s) 732
Csp6I GTAC 6 cut(s) 65, 641, 903, 1083, 1916, 2595
CspAI ACCGGT 1 cut(s) 1898
CspCI CAANNNNNGTGG 4 cut(s) 1012, 1032, 1047, 1067
CviQI GTAC 6 cut(s) 65, 641, 903, 1083, 1916, 2595
DpnI GATC 7 cut(s) 129, 251, 1245, 1464, 1544, 1834, 2549
DpnII GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
EaeI YGGCCR 2 cut(s) 969, 1508
Eam1104I CTCTTC 8 cut(s) 606, 753, 874, 1191, 1485, 1656, 1731, 2511
EarI CTCTTC 8 cut(s) 606, 753, 874, 1191, 1485, 1656, 1731, 2511
Eco130I CCWWGG 2 cut(s) 310, 1586
Eco32I GATATC 2 cut(s) 341, 2141
Eco47I GGWCC 1 cut(s) 1647
Eco47III AGCGCT 1 cut(s) 2104
Eco57I CTGAAG 4 cut(s) 1712, 1875, 2022, 2072
Eco88I CYCGRG 1 cut(s) 459
EcoRV GATATC 2 cut(s) 341, 2141
EcoT14I CCWWGG 2 cut(s) 310, 1586
EcoT22I ATGCAT 1 cut(s) 1422
ErhI CCWWGG 2 cut(s) 310, 1586
Esp3I CGTCTC 2 cut(s) 750, 1105
FalI AAGNNNNNCTT 6 cut(s) 1091, 1123, 1482, 1514, 1508, 1540
FaqI GGGAC 1 cut(s) 413
Fnu4HI GCNGC 3 cut(s) 448, 1332, 1496
FokI GGATG 7 cut(s) 175, 257, 1115, 1457, 2069, 2294, 2507
Fsp4HI GCNGC 3 cut(s) 448, 1332, 1496
GlaI GCGC 1 cut(s) 2104
GluI GCNGC 3 cut(s) 448, 1332, 1496
GsuI CTGGAG 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 2106
HaeIII GGCC 2 cut(s) 971, 1510
HapII CCGG 3 cut(s) 527, 972, 1899
HgaI GACGC 1 cut(s) 732
HhaI GCGC 1 cut(s) 2105
Hin6I GCGC 1 cut(s) 2103
HinP1I GCGC 1 cut(s) 2103
HincII GTYRAC 1 cut(s) 1161
HindII GTYRAC 1 cut(s) 1161
HindIII AAGCTT 2 cut(s) 1355, 2441
HinfI GANTC 7 cut(s) 379, 479, 1705, 1921, 2007, 2431, 2554
HpaI GTTAAC 1 cut(s) 1161
HpaII CCGG 3 cut(s) 527, 972, 1899
HphI GGTGA 3 cut(s) 986, 2168, 2266
Hpy166II GTNNAC 3 cut(s) 905, 1161, 1536
Hpy188I TCNGA 8 cut(s) 123, 837, 895, 1704, 1909, 2047, 2266, 2421
Hpy8I GTNNAC 3 cut(s) 905, 1161, 1536
Hpy99I CGWCG 1 cut(s) 2494
HpyAV CCTTC 7 cut(s) 122, 958, 1093, 1728, 1997, 2285, 2579
HpyCH4III ACNGT 8 cut(s) 415, 1006, 1116, 1158, 1268, 1394, 1411, 1848
HpyCH4IV ACGT 4 cut(s) 214, 267, 2382, 2397
HpyF10VI GCNNNNNNNGC 4 cut(s) 740, 1151, 1331, 1384
HpySE526I ACGT 4 cut(s) 214, 267, 2382, 2397
HspAI GCGC 1 cut(s) 2103
Kpn2I TCCGGA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 1161
Kzo9I GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
LguI GCTCTTC 2 cut(s) 1191, 1485
Lsp1109I GCAGC 3 cut(s) 459, 1318, 1507
LweI GCATC 5 cut(s) 153, 888, 1093, 2086, 2356
MaeII ACGT 4 cut(s) 214, 267, 2382, 2397
MaeIII GTNAC 3 cut(s) 862, 1175, 2479
MalI GATC 7 cut(s) 129, 251, 1245, 1464, 1544, 1834, 2549
MboI GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
MfeI CAATTG 4 cut(s) 492, 1883, 2228, 2501
MhlI GDGCHC 1 cut(s) 1538
MlsI TGGCCA 1 cut(s) 1510
MluNI TGGCCA 1 cut(s) 1510
MlyI GAGTC 1 cut(s) 2563
MmeI TCCRAC 4 cut(s) 1674, 1774, 1869, 2484
Mox20I TGGCCA 1 cut(s) 1510
Mph1103I ATGCAT 1 cut(s) 1422
MroI TCCGGA 1 cut(s) 526
MroXI GAANNNNTTC 2 cut(s) 675, 2032
MscI TGGCCA 1 cut(s) 1510
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 1510
MspA1I CMGCKG 1 cut(s) 2474
MspCI CTTAAG 2 cut(s) 1202, 1477
MspI CCGG 3 cut(s) 527, 972, 1899
MunI CAATTG 4 cut(s) 492, 1883, 2228, 2501
Mva1269I GAATGC 1 cut(s) 450
MvnI CGCG 1 cut(s) 1831
MwoI GCNNNNNNNGC 4 cut(s) 740, 1151, 1331, 1384
NcoI CCATGG 1 cut(s) 310
NdeII GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
NheI GCTAGC 2 cut(s) 2099, 2212
NlaIV GGNNCC 1 cut(s) 1648
NmeAIII GCCGAG 1 cut(s) 2395
NmuCI GTSAC 1 cut(s) 862
NruI TCGCGA 1 cut(s) 1831
NsiI ATGCAT 1 cut(s) 1422
NspI RCATGY 1 cut(s) 1488
NspV TTCGAA 1 cut(s) 1659
PacI TTAATTAA 1 cut(s) 1350
PciSI GCTCTTC 2 cut(s) 1191, 1485
PctI GAATGC 1 cut(s) 450
PdmI GAANNNNTTC 2 cut(s) 675, 2032
PfeI GAWTC 6 cut(s) 379, 479, 1705, 1921, 2007, 2431
PinAI ACCGGT 1 cut(s) 1898
PkrI GCNGC 3 cut(s) 449, 1333, 1497
PleI GAGTC 1 cut(s) 2562
PpsI GAGTC 1 cut(s) 2562
PshAI GACNNNNGTC 2 cut(s) 59, 2238
PshBI ATTAAT 1 cut(s) 1346
PspN4I GGNNCC 1 cut(s) 1648
PspPI GGNCC 1 cut(s) 1647
PsrI GAACNNNNNNTAC 1 cut(s) 2596
PstNI CAGNNNCTG 1 cut(s) 2341
PvuII CAGCTG 1 cut(s) 2474
RruI TCGCGA 1 cut(s) 1831
RsaI GTAC 6 cut(s) 66, 642, 904, 1084, 1917, 2596
RsaNI GTAC 6 cut(s) 65, 641, 903, 1083, 1916, 2595
RseI CAYNNNNRTG 1 cut(s) 239
SapI GCTCTTC 2 cut(s) 1191, 1485
SatI GCNGC 3 cut(s) 448, 1332, 1496
Sau3AI GATC 7 cut(s) 127, 249, 1243, 1462, 1542, 1832, 2547
Sau96I GGNCC 1 cut(s) 1647
ScaI AGTACT 2 cut(s) 642, 1084
SchI GAGTC 1 cut(s) 2563
SduI GDGCHC 1 cut(s) 1538
SfaNI GCATC 5 cut(s) 153, 888, 1093, 2086, 2356
SfcI CTRYAG 4 cut(s) 57, 595, 606, 1552
SfuI TTCGAA 1 cut(s) 1659
SinI GGWCC 1 cut(s) 1647
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 7 cut(s) 255, 1072, 1108, 1202, 1477, 1578, 2207
SmoI CTYRAG 7 cut(s) 255, 1072, 1108, 1202, 1477, 1578, 2207
SsiI CCGC 2 cut(s) 1432, 2073
SspI AATATT 1 cut(s) 1564
StyI CCWWGG 2 cut(s) 310, 1586
TaaI ACNGT 8 cut(s) 415, 1006, 1116, 1158, 1268, 1394, 1411, 1848
TaiI ACGT 4 cut(s) 217, 270, 2385, 2400
TaqI TCGA 6 cut(s) 337, 877, 1238, 1260, 1659, 2550
TatI WGTACW 3 cut(s) 640, 1082, 1915
TfiI GAWTC 6 cut(s) 379, 479, 1705, 1921, 2007, 2431
TscAI CASTG 2 cut(s) 418, 1161
TseFI GTSAC 1 cut(s) 862
TseI GCWGC 3 cut(s) 447, 1331, 1495
Tsp45I GTSAC 1 cut(s) 862
TspGWI ACGGA 2 cut(s) 1331, 2507
TspRI CASTG 2 cut(s) 418, 1161
Vha464I CTTAAG 2 cut(s) 1202, 1477
VneI GTGCAC 1 cut(s) 1534
VpaK11BI GGWCC 1 cut(s) 1647
VspI ATTAAT 1 cut(s) 1346
XapI RAATTY 4 cut(s) 404, 687, 1815, 2032
XbaI TCTAGA 2 cut(s) 1165, 2242
XceI RCATGY 1 cut(s) 1488
XmnI GAANNNNTTC 2 cut(s) 675, 2032
ZrmI AGTACT 2 cut(s) 642, 1084
Zsp2I ATGCAT 1 cut(s) 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.