Rroxscaffold_5G00342720

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000042
Physical Location & Seq
Reverse (-)
11841151 .. 11853711
12561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342720.1

Sequence Viewer

Length: 4704 bp
ATGGCATTTCTTATTGAAATTGGTACTACAATTGTCGCAAAGCTAGCTGAGTACATGGTTGAACCAGTTATACGCCAAGCGGGTTATATAATCTGCTACAACAAGAACCTCAGAAAACTACAAAATCAAGTCGGTGACTTAGTTGGAGCCAGAATAAGCATGCAGCATGCTGTTGAAACAGAAGAAAGAAAAGGTAAAAAAATTGAAAATGGGGTCCAGAACTGGCTGACTGAAGTGGATCAGCTGACTAAAGAAGCAGATGACTTCTTGAAAGATGAACACCATGCAGAGACCAAGTGTCTACAGGGCTTTTGTCCTAATCTAAAGCTTCGTCATCATCTAAGCAGGAAATCAACAAAAATGGCTCAAGAGGTGGCTGAGCTTTATGAGAAAAAGAAGAACTTTGACAATATTGCATATGCTGCCTCCCAAGAAGAGGTGTGTGTAGCAGCTCTCCAAGATTATGAGGCCTTTGATTCAAGGACTTCAGCTGCGAAGGATGTAATCAACGAATTGAGAAATTCTAATACCTACATGATTGGGGTGTACGGTATTGGGGGTGTGGGAAAAACAACACTTGTCAAAGAAGTTTATAAGCAATTAGCTACAGGAGGTGAGAAGCTGTTTGATGAGGTAGTTATGGTACTCGATCTGAAAAAGAATCCCAGCATCGATAGAATTCAAAAAGAAATTGCTGAGAAGTTAGGTCTCGAGATTCTCGAAACTGAGACCTTTGCTGGAAGAGCACGTCGAATAAATAACAGGATCAAAGACAAGAAGTCTCTTGTGATCCTAGATGATGTTTGGGAAAACATCGATTTGGGGGATGTGGGTCTTCCTCGAATGGAAACTCTTAAAATACTGTTGACTTCTCGAAGCAAACTAGTATTATCTTCCGATATGGGTACACAAAAGGAGTTTCCTCTCGAAGTTTTAGACAAAGATGAAGCTTGGAGTTTATTTCAGAAGACGGCAGGTGATATTGTTAGAAATCCCAATATTGGAACTATAGCCACCCAAGTAGCTGAAAACTGTGGAGGTTTGCCACTTTTGATTGTCACTGTTGCAAGATCCCTGAGAAATAGTTCATTACAAGCATGGAAAGATACTTTCAGACGCCTAAAAAGGTTAGATGGAAAAGGATTGACAGAGAAAACATACTCCGCTATTGAGTGGAGTTACAATCATTTGGGTGATGAGGAGCTTAAATCATTGTTCTTGCTCTTGGTCAGATTAGAAGACTTGAGAATGAGAAATAGTTTCAACAGATGGGAGGCTGAAGGAGTCATCAGTACTGAAAGAAGGAATGCAAACCTTGAAGAGCTAAAACACTTGCATCAGCTAACTGCATTACAAATACATATCCCAGATGTTGTTACTGTTCCAGTAGATTTGTTCACTGCTAAGTTGGCGAGATTCCAAATATGTATTGGTTCTGTGTGGAAATGGGCTGATGTCGATGAAACCATCAATGCACTAAAACTCAAATTCACCACTGGCCATAAATTCGACCAAGGTTTGAAAATGCTACTCAAGAGAACTGAAGACTTGTACTTGGAGAGCAAGGAAGGTGTTAAAAATAGTACTTTATCTGAATTGGGTAAAGACAGTTTTCCGCAACTGAAACATCTTCATGTCCAAAACAATGCTGAGTTTGCATACACCATCAATGGGAAGGTTGGTTTTCCCAACTTAACATGGTTGGAGGTGAGTGGACTCAATGATTTAAGATTCTTGTTCTCATCTTCAACTGCTAGAAGTCTTCTACAACTCAAACGTCTTCAGATATCGGGATGTCAAATCATGGAAGCAATAGTATCAATAGAAGAATTTAATGAGATTGCAAAGAAACTGTTTTGCCAACTACAAGATTTGGAGCTAAAAGACCTTCCAAAGGTCACTAAATTCTGCTCAAGAAAGTATACTGAATTTTCAAATCCATCCTCTGGTAGACTGCAATTGGAGGACTGTATTAAAAGAAATACAATTGGTGATGAAATTGAAGAGATAAACTCAACTGGAAACCTTGACGTTGTAATCCAACACTTTCTGTTTGATAACAAGTTAGTTACAAATTCTCTTCACAATTCCACGAGTAAGATGAAAATCATGTATATGCAGATAGAGTTTCCAAACTTGAAGAAGTTATCCATTGATGGCCTAGCAAAGTTGACGACAGTATGGAACAATCAACTTTCTCTAGAGAGTTCAAAAAATCTAGAGACAATAGAAATTGTTTCGTGTGACAGTTTGAAAAGTATTTTTCCAGTCTCAGTGGCCAGAAGTCTTCAACAGTTGAGGAGTCTGAAAGTCCGGAATTGTGGGCTAGAGGAAATCGTCTCAAAAGAAGACGGTGTACAGACAACACCTATGTTTGTTTTTTCAAAACTAACATATGTGAGATTTGGAGATTTACCCCAACTTAGGAGTTTCTATCCAGAATCGCATTCTTCAAATTGGCCATCGCTCGTAACTTTATTGGTTTATAATTGTACTGAAGTGCAGACATTTGCAGAGGGCAGGTGTGAGTTGAACAATCTTTGCACTCCAAATAAAAAATCTTTGTTTTTACTTGAGAAGGATTCATTCCCCAACTTGGAAGTTTTAGGATTGAACGGAATGGAGAATTGGGATAGTCCGCCACTCCACCTGTTTAGGAAGCTCAAATATATTTATAGTAGTGCATATGCCAGTTCATCTGTGAATTCTCTGGAGAAATTACTTGGTCTTGAAAAAGTCAATGCGAGTAGGAATGGAGAAATACATGCAGTTGGGGATGGGACCCTCCCACATTTAAGAGAGTTGTCCCTTTACGGGATGCGGAAGCTAATGAATCTCGGGGAGGATAGTTTCAGACCAGCATGCCCATATTTTCCAAATCTTGAAATTCTGAAGCTAAAGGACTGTGACAGCTTAAAGAATTTAAGATCATCTGCAATATCCTTCAAGAATCTAACAACTTTGCAAGTAAGTTGTTGTAAGGGATTGAAATACTTGATATCTTTCTCCATGGCCAAAAGTTTGATGCAACTCACAAACCTAGAAGTTCGGGATTGTGAGGAAATGATAGAAATAGTAGGCATCAATGAAAATGATGATTCAGAAAATGTGATTGAATTCAGGGTGTTGAAACATTTGGAACTTTCTGCTCTACCAAGTTTGAGAGGCTTTTGCTCGGGAACTCGCATTGTCAAATTTCCATCCTTAGAAAAATTATCCATGAGTTGTACTCAATTGGAGACGTTCATCTTTGATTCTATGGGTAAAAGTAATACAATTGGCAAGGACATCAAAGACACGGACTCAAGCAAAAACCAAGAGATTGAAGTAGTGCAACCTTCTCTTTTTGACAACAAGGTTGACTTTCCGAGGTTGAAGAGTTTGTCCCTAAAGGGTTTGACAAAGTTGACTGCAATATGGCACAGTCAACTTTCTCCAAACTCTTTTAGTAGACTCAGTGACCTTGAATTAACAAGGCTGACAGTGAGCAGCTGTGGAGTGGAGGGAATCGTTGCAAGAGAGGAGGGACTACAAGCAACACCTAAATTTGTGTTTCCAAAAGTAACACAAGTGAGTTTTAATAATTTGTCTCAGCTAGTGAATTTCTACCCAGATGTGCATGTGTCTAGCTGGCCATTGCTCAACTCTTTGGAAGTGTGTGAATGCGGCAAAGTGGACATATTTGTTGAAGAAATTTCAAGTTTCCAAGAAAAGGGTGACCCGAAAAGTTCCAGTACTCTTATTGGTCGGCAATCTCTCTTTTCAATTGAGAAGGATTCATTTCCTAATTTGCAATGGTTGGTCGTGAATGCAATGGAGTTTTCGAATGGTCCACTCCCAGCAGCAGGGCAGTTGTTTTGCAAACTAAAGCATCTGGATGTTTGTTGTCCAGAGTCTAAGGCAGTTGTTTTCCTTGACAAATTATTCGACCCAGAAGGAAACAGCACTAGTAGTGCAGTTGGGATTGGGACCCAGCAGCAGCAGCAGCTCCCACATTTAAAAGAGTTGAGTCTTGTTGGAATGGAGAAGCTGATGCATCTAGGCCAGGATGATGAGGAGGATAACTCACAACCAGCCCCCCGCATCCCAAATTTTCCAAACCTGCAAATTCTAGACGTGAATGGTTGTGACAGTTTAAGGAATCTGAGATCATCCGCAATATCCTTCAACAATCTAACAACTTTGCAATGGGGAGGCAATGAAGATGACGATTCAAGACATGAGATTACATTCAGGCGGTTGAAACATCTGAAACTATCTTCTCTACCAAGACTGCAACGCTTTTGCTCCGGAAATTGCATTGCTAAATTCCCGTCCTTGGAGACTTCAAGCATGAGCAACCGCCTCAAATTGAAGATTTTTCCAGCTCATGACCAAACGCTACAGCTAACAAACGAAGAGGAAGACACAGATCTTGATTTCTTGGAAGAAGTATATGATGCTTTGGCTAAACGCCTTGTTCCTACAGCAGCAGCAATGCCAAATCCAAATTTGAATGTGCGCGCTGATGATGCGGTGGAATATTATGCCAAGCGCAGCCAACCTATTACCTGCGGAAGTGTCAAAACAAGCGGCAGCCTGCGCCTTGCAAGTCCTAAGATGCAAAGCGACCGTATGTTGGGGAGTGGGAGAAGAGTGCAAGGAGAAAAAGATGCTGTACCACCTCTTTTCTTGCTTCACATGGTCCGAGTACATGGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1567

Amino Acids

176.61

Weight (kDa)

6.36

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 165 - 326 7.3e-31 NB-ARC domain
LRR_RPS2 PF23247 561 - 643 2.3e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 698 - 775 5.2e-17 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 976 - 1086 9.4e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1254 - 1395 4e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 594, 2487
AarI CACCTGC 2 cut(s) 965, 2511
Acc36I ACCTGC 4 cut(s) 965, 2511, 4110, 4559
AccB7I CCANNNNNTGG 1 cut(s) 1946
AccI GTMKAC 4 cut(s) 301, 1922, 1951, 3451
AccII CGCG 1 cut(s) 4503
AccIII TCCGGA 2 cut(s) 2313, 4289
AclWI GGATC 4 cut(s) 246, 773, 784, 1065
AcoI YGGCCR 5 cut(s) 1498, 2277, 2459, 3012, 3632
AcuI CTGAAG 7 cut(s) 252, 471, 1299, 1563, 1766, 2517, 2912
AcyI GRCGYC 1 cut(s) 1117
AhdI GACNNNNNGTC 2 cut(s) 297, 778
AhlI ACTAGT 2 cut(s) 883, 3947
AjiI CACGTC 2 cut(s) 749, 4117
AjnI CCWGG 1 cut(s) 4044
AjuI GAANNNNNNNTTGG 2 cut(s) 2611, 2643
Alw21I GWGCWC 1 cut(s) 748
AlwI GGATC 4 cut(s) 246, 773, 784, 1065
Ama87I CYCGRG 3 cut(s) 710, 2837, 3175
Aor13HI TCCGGA 2 cut(s) 2313, 4289
AoxI GGCC 8 cut(s) 468, 1498, 2158, 2277, 2459, 3012, 3632, 4042
ArsI GACNNNNNNTTYG 2 cut(s) 3908, 3940
Asp700I GAANNNNTTC 1 cut(s) 1084
AspLEI GCGC 4 cut(s) 4503, 4505, 4536, 4584
AspS9I GGNCC 5 cut(s) 214, 2781, 3830, 3969, 4684
AsuHPI GGTGA 8 cut(s) 146, 626, 989, 1205, 1483, 1720, 2003, 3728
AsuII TTCGAA 1 cut(s) 3824
AsuNHI GCTAGC 1 cut(s) 43
AvaI CYCGRG 3 cut(s) 710, 2837, 3175
AvaII GGWCC 5 cut(s) 214, 2781, 3830, 3969, 4684
BalI TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
BarI GAAGNNNNNNTAC 2 cut(s) 2340, 2372
BauI CACGAG 1 cut(s) 2092
BbsI GAAGAC 9 cut(s) 827, 974, 1245, 1551, 1754, 1772, 2279, 2355, 4410
Bbv12I GWGCWC 1 cut(s) 748
BccI CCATC 9 cut(s) 1127, 1263, 1475, 1673, 1948, 2150, 2470, 2771, 3208
BceAI ACGGC 1 cut(s) 987
BciT130I CCWGG 1 cut(s) 4046
BcuI ACTAGT 2 cut(s) 883, 3947
BfmI CTRYAG 5 cut(s) 302, 606, 1008, 4382, 4464
BfuAI ACCTGC 4 cut(s) 965, 2511, 4110, 4559
BglII AGATCT 1 cut(s) 4411
BlpI GCTNAGC 1 cut(s) 378
BmcAI AGTACT 3 cut(s) 1294, 1585, 3736
Bme1390I CCNGG 1 cut(s) 4046
Bme18I GGWCC 5 cut(s) 214, 2781, 3830, 3969, 4684
BmeRI GACNNNNNGTC 2 cut(s) 297, 778
BmeT110I CYCGRG 3 cut(s) 710, 2837, 3175
BmgBI CACGTC 2 cut(s) 749, 4117
BmgT120I GGNCC 5 cut(s) 214, 2781, 3830, 3969, 4684
BmiI GGNNCC 6 cut(s) 148, 215, 2782, 2783, 3970, 3971
BmrFI CCNGG 1 cut(s) 4046
BmtI GCTAGC 1 cut(s) 47
BpiI GAAGAC 9 cut(s) 827, 974, 1245, 1551, 1754, 1772, 2279, 2355, 4410
BplI GAGNNNNNCTC 6 cut(s) 1997, 2029, 3214, 3246, 4049, 4081
BpmI CTGGAG 1 cut(s) 2732
Bpu1102I GCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 3824
BpuEI CTTGAG 6 cut(s) 351, 1264, 1517, 1897, 2594, 3289
Bsa29I ATCGAT 2 cut(s) 672, 816
BsaBI GATNNNNATC 1 cut(s) 2105
BsaHI GRCGYC 1 cut(s) 1117
BsaI GGTCTC 3 cut(s) 284, 713, 722
BsaJI CCNNGG 4 cut(s) 1513, 3009, 3368, 4317
BsaWI WCCGGW 2 cut(s) 2313, 4289
Bse1I ACTGG 8 cut(s) 65, 227, 1385, 1501, 2023, 2267, 2691, 3732
Bse3DI GCAATG 7 cut(s) 3635, 3800, 3819, 4193, 4204, 4299, 4482
Bse8I GATNNNNATC 1 cut(s) 2105
BseAI TCCGGA 2 cut(s) 2313, 4289
BseBI CCWGG 1 cut(s) 4046
BseCI ATCGAT 2 cut(s) 672, 816
BseDI CCNNGG 4 cut(s) 1513, 3009, 3368, 4317
BseJI GATNNNNATC 1 cut(s) 2105
BseMI GCAATG 7 cut(s) 3635, 3800, 3819, 4193, 4204, 4299, 4482
BseNI ACTGG 8 cut(s) 65, 227, 1385, 1501, 2023, 2267, 2691, 3732
BsePI GCGCGC 1 cut(s) 4501
BseRI GAGGAG 4 cut(s) 1214, 2314, 3536, 4070
BseYI CCCAGC 3 cut(s) 665, 3838, 3972
BsgI GTGCAG 2 cut(s) 2522, 3975
Bsh1236I CGCG 1 cut(s) 4503
Bsh1285I CGRYCG 1 cut(s) 4612
BshFI GGCC 8 cut(s) 470, 1500, 2160, 2279, 2461, 3014, 3634, 4044
BshVI ATCGAT 2 cut(s) 672, 816
BsiEI CGRYCG 1 cut(s) 4612
BsiHKAI GWGCWC 1 cut(s) 748
BsiHKCI CYCGRG 3 cut(s) 710, 2837, 3175
BsiSI CCGG 2 cut(s) 2314, 4290
BslFI GGGAC 5 cut(s) 2791, 2794, 3370, 3540, 3982
BsmBI CGTCTC 2 cut(s) 2344, 3233
BsmFI GGGAC 5 cut(s) 2791, 2794, 3370, 3540, 3982
BsmI GAATGC 4 cut(s) 1312, 2446, 3668, 3814
BsnI GGCC 8 cut(s) 470, 1500, 2160, 2279, 2461, 3014, 3634, 4044
Bso31I GGTCTC 3 cut(s) 284, 713, 722
BsoBI CYCGRG 3 cut(s) 710, 2837, 3175
Bsp119I TTCGAA 1 cut(s) 3824
Bsp1286I GDGCHC 1 cut(s) 748
Bsp13I TCCGGA 2 cut(s) 2313, 4289
Bsp1407I TGTACA 1 cut(s) 2356
Bsp143I GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
Bsp1720I GCTNAGC 1 cut(s) 378
Bsp19I CCATGG 1 cut(s) 3009
BspANI GGCC 8 cut(s) 470, 1500, 2160, 2279, 2461, 3014, 3634, 4044
BspDI ATCGAT 2 cut(s) 672, 816
BspEI TCCGGA 2 cut(s) 2313, 4289
BspFNI CGCG 1 cut(s) 4503
BspHI TCATGA 1 cut(s) 4369
BspLI GGNNCC 6 cut(s) 148, 215, 2782, 2783, 3970, 3971
BspMI ACCTGC 4 cut(s) 965, 2511, 4110, 4559
BspOI GCTAGC 1 cut(s) 47
BspPI GGATC 4 cut(s) 246, 773, 784, 1065
BspQI GCTCTTC 2 cut(s) 736, 1314
BspT104I TTCGAA 1 cut(s) 3824
BspTNI GGTCTC 3 cut(s) 284, 713, 722
BsrDI GCAATG 7 cut(s) 3635, 3800, 3819, 4193, 4204, 4299, 4482
BsrGI TGTACA 1 cut(s) 2356
BsrI ACTGG 8 cut(s) 65, 227, 1385, 1501, 2023, 2267, 2691, 3732
BssECI CCNNGG 4 cut(s) 1513, 3009, 3368, 4317
BssHII GCGCGC 1 cut(s) 4501
BssMI GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
BssNAI GTATAC 1 cut(s) 1923
BssNI GRCGYC 1 cut(s) 1117
BssSI CACGAG 1 cut(s) 2092
BssT1I CCWWGG 3 cut(s) 1513, 3009, 4317
Bst1107I GTATAC 1 cut(s) 1923
Bst2BI CACGAG 1 cut(s) 2092
Bst2UI CCWGG 1 cut(s) 4046
Bst6I CTCTTC 8 cut(s) 429, 736, 1314, 1998, 2085, 3371, 4392, 4627
BstACI GRCGYC 1 cut(s) 1117
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 2356
BstBI TTCGAA 1 cut(s) 3824
BstC8I GCNNGC 7 cut(s) 45, 161, 168, 2863, 3632, 4503, 4580
BstDSI CCRYGG 1 cut(s) 3009
BstEII GGTNACC 1 cut(s) 3716
BstENI CCTNNNNNAGG 1 cut(s) 1892
BstFNI CGCG 1 cut(s) 4503
BstHHI GCGC 4 cut(s) 4503, 4505, 4536, 4584
BstKTI GATC 8 cut(s) 241, 652, 768, 792, 1073, 2930, 4151, 4414
BstMBI GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
BstMCI CGRYCG 1 cut(s) 4612
BstMWI GCNNNNNNNGC 9 cut(s) 44, 422, 743, 1409, 1655, 3982, 3985, 4511, 4581
BstNI CCWGG 1 cut(s) 4046
BstNSI RCATGY 5 cut(s) 163, 170, 2768, 2865, 3623
BstPI GGTNACC 1 cut(s) 3716
BstSCI CCNGG 1 cut(s) 4044
BstSFI CTRYAG 5 cut(s) 302, 606, 1008, 4382, 4464
BstUI CGCG 1 cut(s) 4503
BstV2I GAAGAC 9 cut(s) 827, 974, 1245, 1551, 1754, 1772, 2279, 2355, 4410
BstX2I RGATCY 2 cut(s) 1070, 4411
BstYI RGATCY 2 cut(s) 1070, 4411
BstZ17I GTATAC 1 cut(s) 1923
Bsu15I ATCGAT 2 cut(s) 672, 816
BsuRI GGCC 8 cut(s) 470, 1500, 2160, 2279, 2461, 3014, 3634, 4044
BsuTUI ATCGAT 2 cut(s) 672, 816
BtgI CCRYGG 1 cut(s) 3009
BtgZI GCGATG 1 cut(s) 2448
BtrI CACGTC 2 cut(s) 749, 4117
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 6 cut(s) 1059, 1398, 1494, 2280, 3463, 3489
BveI ACCTGC 4 cut(s) 965, 2511, 4110, 4559
Cac8I GCNNGC 7 cut(s) 45, 161, 168, 2863, 3632, 4503, 4580
CciI TCATGA 1 cut(s) 4369
CfoI GCGC 4 cut(s) 4503, 4505, 4536, 4584
Cfr13I GGNCC 5 cut(s) 214, 2781, 3830, 3969, 4684
ClaI ATCGAT 2 cut(s) 672, 816
CseI GACGC 1 cut(s) 1125
DpnI GATC 8 cut(s) 240, 651, 767, 791, 1072, 2929, 4150, 4413
DpnII GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
DraI TTTAAA 1 cut(s) 3999
DriI GACNNNNNGTC 2 cut(s) 297, 778
EaeI YGGCCR 5 cut(s) 1498, 2277, 2459, 3012, 3632
Eam1104I CTCTTC 8 cut(s) 429, 736, 1314, 1998, 2085, 3371, 4392, 4627
Eam1105I GACNNNNNGTC 2 cut(s) 297, 778
EarI CTCTTC 8 cut(s) 429, 736, 1314, 1998, 2085, 3371, 4392, 4627
EciI GGCGGA 1 cut(s) 2628
Eco130I CCWWGG 3 cut(s) 1513, 3009, 4317
Eco147I AGGCCT 1 cut(s) 470
Eco31I GGTCTC 3 cut(s) 284, 713, 722
Eco32I GATATC 2 cut(s) 1788, 3000
Eco47I GGWCC 5 cut(s) 214, 2781, 3830, 3969, 4684
Eco57I CTGAAG 7 cut(s) 252, 471, 1299, 1563, 1766, 2517, 2912
Eco88I CYCGRG 3 cut(s) 710, 2837, 3175
Eco91I GGTNACC 1 cut(s) 3716
EcoNI CCTNNNNNAGG 1 cut(s) 1892
EcoO109I RGGNCCY 2 cut(s) 2781, 3969
EcoO65I GGTNACC 1 cut(s) 3716
EcoRI GAATTC 3 cut(s) 678, 2704, 3116
EcoRII CCWGG 1 cut(s) 4044
EcoRV GATATC 2 cut(s) 1788, 3000
EcoT14I CCWWGG 3 cut(s) 1513, 3009, 4317
EcoT22I ATGCAT 1 cut(s) 4038
ErhI CCWWGG 3 cut(s) 1513, 3009, 4317
Esp3I CGTCTC 2 cut(s) 2344, 3233
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 3347, 3379
FaqI GGGAC 5 cut(s) 2791, 2794, 3370, 3540, 3982
FauI CCCGC 2 cut(s) 73, 4088
FauNDI CATATG 3 cut(s) 418, 2395, 2686
FblI GTMKAC 4 cut(s) 301, 1922, 1951, 3451
GlaI GCGC 4 cut(s) 4502, 4504, 4535, 4583
GsaI CCCAGC 3 cut(s) 669, 3842, 3976
GsuI CTGGAG 1 cut(s) 2732
HaeIII GGCC 8 cut(s) 470, 1500, 2160, 2279, 2461, 3014, 3634, 4044
HapII CCGG 2 cut(s) 2314, 4290
HgaI GACGC 1 cut(s) 1125
HhaI GCGC 4 cut(s) 4503, 4505, 4536, 4584
Hin1I GRCGYC 1 cut(s) 1117
Hin6I GCGC 4 cut(s) 4501, 4503, 4534, 4582
HinP1I GCGC 4 cut(s) 4501, 4503, 4534, 4582
HincII GTYRAC 5 cut(s) 867, 2172, 3361, 3408, 3428
HindII GTYRAC 5 cut(s) 867, 2172, 3361, 3408, 3428
HindIII AAGCTT 2 cut(s) 326, 948
HpaII CCGG 2 cut(s) 2314, 4290
HphI GGTGA 8 cut(s) 146, 626, 989, 1205, 1483, 1720, 2003, 3728
Hpy99I CGWCG 1 cut(s) 753
HpyCH4IV ACGT 5 cut(s) 748, 1777, 2031, 3242, 4116
HpyF10VI GCNNNNNNNGC 9 cut(s) 44, 422, 743, 1409, 1655, 3982, 3985, 4511, 4581
HpySE526I ACGT 5 cut(s) 748, 1777, 2031, 3242, 4116
Hsp92I GRCGYC 1 cut(s) 1117
HspAI GCGC 4 cut(s) 4501, 4503, 4534, 4582
KflI GGGWCCC 2 cut(s) 2781, 3969
Kpn2I TCCGGA 2 cut(s) 2313, 4289
Kzo9I GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
LguI GCTCTTC 2 cut(s) 736, 1314
LmnI GCTCC 5 cut(s) 146, 1201, 1876, 3993, 4292
MaeII ACGT 5 cut(s) 748, 1777, 2031, 3242, 4116
MalI GATC 8 cut(s) 240, 651, 767, 791, 1072, 2929, 4150, 4413
MboI GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
MfeI CAATTG 6 cut(s) 30, 1958, 1986, 3233, 3276, 3765
MflI RGATCY 2 cut(s) 1070, 4411
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
MluNI TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
MlyI GAGTC 7 cut(s) 1293, 1710, 2311, 3296, 3447, 3902, 4018
MmeI TCCRAC 4 cut(s) 124, 1683, 2065, 3997
Mox20I TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
Mph1103I ATGCAT 1 cut(s) 4038
MroI TCCGGA 2 cut(s) 2313, 4289
MroXI GAANNNNTTC 1 cut(s) 1084
MscI TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
MslI CAYNNNNRTG 4 cut(s) 1191, 1632, 2114, 3876
Msp20I TGGCCA 5 cut(s) 1500, 2279, 2461, 3014, 3634
MspA1I CMGCKG 3 cut(s) 244, 491, 3492
MspI CCGG 2 cut(s) 2314, 4290
MspR9I CCNGG 1 cut(s) 4046
MunI CAATTG 6 cut(s) 30, 1958, 1986, 3233, 3276, 3765
Mva1269I GAATGC 4 cut(s) 1312, 2446, 3668, 3814
MvaI CCWGG 1 cut(s) 4046
MvnI CGCG 1 cut(s) 4503
MwoI GCNNNNNNNGC 9 cut(s) 44, 422, 743, 1409, 1655, 3982, 3985, 4511, 4581
NcoI CCATGG 1 cut(s) 3009
NdeI CATATG 3 cut(s) 418, 2395, 2686
NdeII GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
NheI GCTAGC 1 cut(s) 43
NlaIV GGNNCC 6 cut(s) 148, 215, 2782, 2783, 3970, 3971
NmuCI GTSAC 8 cut(s) 134, 1057, 1897, 2243, 2906, 3458, 3716, 4127
NsiI ATGCAT 1 cut(s) 4038
NspI RCATGY 5 cut(s) 163, 170, 2768, 2865, 3623
NspV TTCGAA 1 cut(s) 3824
PaeI GCATGC 3 cut(s) 163, 170, 2865
PaeR7I CTCGAG 1 cut(s) 710
PagI TCATGA 1 cut(s) 4369
PaqCI CACCTGC 2 cut(s) 965, 2511
PauI GCGCGC 1 cut(s) 4501
PceI AGGCCT 1 cut(s) 470
PciSI GCTCTTC 2 cut(s) 736, 1314
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PctI GAATGC 4 cut(s) 1312, 2446, 3668, 3814
PdmI GAANNNNTTC 1 cut(s) 1084
PflMI CCANNNNNTGG 1 cut(s) 1946
PleI GAGTC 7 cut(s) 1292, 1710, 2310, 3296, 3447, 3901, 4017
PpsI GAGTC 7 cut(s) 1292, 1710, 2310, 3296, 3447, 3901, 4017
PpuMI RGGWCCY 2 cut(s) 2781, 3969
PsiI TTATAA 2 cut(s) 594, 2487
Psp5II RGGWCCY 2 cut(s) 2781, 3969
Psp6I CCWGG 1 cut(s) 4044
PspEI GGTNACC 1 cut(s) 3716
PspFI CCCAGC 3 cut(s) 665, 3838, 3972
PspGI CCWGG 1 cut(s) 4044
PspN4I GGNNCC 6 cut(s) 148, 215, 2782, 2783, 3970, 3971
PspPI GGNCC 5 cut(s) 214, 2781, 3830, 3969, 4684
PspPPI RGGWCCY 2 cut(s) 2781, 3969
PsrI GAACNNNNNNTAC 2 cut(s) 54, 86
PsuI RGATCY 2 cut(s) 1070, 4411
PteI GCGCGC 1 cut(s) 4501
PvuII CAGCTG 3 cut(s) 244, 491, 3492
RseI CAYNNNNRTG 4 cut(s) 1191, 1632, 2114, 3876
SapI GCTCTTC 2 cut(s) 736, 1314
Sau3AI GATC 8 cut(s) 238, 649, 765, 789, 1070, 2927, 4148, 4411
Sau96I GGNCC 5 cut(s) 214, 2781, 3830, 3969, 4684
ScaI AGTACT 3 cut(s) 1294, 1585, 3736
SchI GAGTC 7 cut(s) 1293, 1710, 2311, 3296, 3447, 3902, 4018
ScrFI CCNGG 1 cut(s) 4046
SduI GDGCHC 1 cut(s) 748
SfcI CTRYAG 5 cut(s) 302, 606, 1008, 4382, 4464
Sfr274I CTCGAG 1 cut(s) 710
SfuI TTCGAA 1 cut(s) 3824
SinI GGWCC 5 cut(s) 214, 2781, 3830, 3969, 4684
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 4 cut(s) 1191, 1632, 2114, 3876
SmlI CTYRAG 7 cut(s) 366, 710, 1243, 1532, 1912, 2573, 3304
SmoI CTYRAG 7 cut(s) 366, 710, 1243, 1532, 1912, 2573, 3304
SpeI ACTAGT 2 cut(s) 883, 3947
SphI GCATGC 3 cut(s) 163, 170, 2865
SseBI AGGCCT 1 cut(s) 470
SspI AATATT 3 cut(s) 412, 1000, 4523
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 4044
StyI CCWWGG 3 cut(s) 1513, 3009, 4317
TaiI ACGT 5 cut(s) 751, 1780, 2034, 3245, 4119
TatI WGTACW 9 cut(s) 51, 1292, 1551, 1583, 2356, 2492, 3227, 3734, 4690
TauI GCSGC 2 cut(s) 3669, 4575
TscAI CASTG 6 cut(s) 1066, 1405, 1501, 2280, 3463, 3489
TseFI GTSAC 8 cut(s) 134, 1057, 1897, 2243, 2906, 3458, 3716, 4127
Tsp45I GTSAC 8 cut(s) 134, 1057, 1897, 2243, 2906, 3458, 3716, 4127
TspGWI ACGGA 2 cut(s) 2631, 3314
TspRI CASTG 6 cut(s) 1066, 1405, 1501, 2280, 3463, 3489
Van91I CCANNNNNTGG 1 cut(s) 1946
VpaK11BI GGWCC 5 cut(s) 214, 2781, 3830, 3969, 4684
XagI CCTNNNNNAGG 1 cut(s) 1892
XbaI TCTAGA 3 cut(s) 2200, 2218, 4111
XceI RCATGY 5 cut(s) 163, 170, 2768, 2865, 3623
XcmI CCANNNNNNNNNTGG 1 cut(s) 1427
XhoI CTCGAG 1 cut(s) 710
XmiI GTMKAC 4 cut(s) 301, 1922, 1951, 3451
XmnI GAANNNNTTC 1 cut(s) 1084
ZrmI AGTACT 3 cut(s) 1294, 1585, 3736
Zsp2I ATGCAT 1 cut(s) 4038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.