Rmu_sc0005506.1_g000016

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005506.1
OG0000042
Physical Location & Seq
Forward (+)
58697 .. 64829
6133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005506.1_g000016.1.cds

Sequence Viewer

Length: 4125 bp
atggagtttctttcaaagattgctgactacacgattgaaccttttgtacgtctactgggacgacaagtgggttatgtaattcactgcaaaaccaaccttcaaaatttgcaagctaaagtggaagaattaaaagctgccagagaggcgatagataatgaggttgctgaagctaaaacaaaaggggaaaagattcaatctgatgtccggttgtggctgacaacagcgggtaagatcactacaaagacagaccaatttatgaaagatgcaagccaggtaaagctgaaatgtttccatggattttgtcctaatctgactactcgtcaccagcttagcagggaatcaacaaaactggtacaggaggttgttgaacagtatgaaaaaaaaggattaatttcccaagtttcttgcggtattctccggaaagaggtgtggagtgtaactaccggagattaccagactcttcaatcaaggatatcagttgtgaaggaaatcatggatacactgaaagactctgacattcagaggatgggggtgtgtggaattggaggagtgggtaaaaccacgttggtcaaagaagtttacaagcaagcttcagaagataaacagttatttgacaatgtggtcatcatattagatgtgaaaagtaatccagacccggaagcaattcaaaagaaaattgttgaaaagttgggcatggaaatttctgtaaatgaaagggaaactattgatggaagagcgagtcgtttatgtgccaggatacaaggcaaaaagattcttgtgatattggatgatgttcaagaaaaaattgatttggaggttgtgggacttccccgtttgccaacttgtaaaattttggtgacatgtagaactgcaaatgttttatcttttgataagatgtctgcagataaagtgtttcctcttgaccttctaggtaaagaagaaacttggaatttgtttgtgaagatggccggtgacattgttaaacccaatggtcgaataagagatgtagcgatcaaagtagccgaaaaatgtggaggcctgcccttgttagtcgtcacagttgcaagtgctttgaaaggaaaaaacaaattaggtgaatggaaggacgccttaagaagacttaaagagtttgataaagaagaattgacggaaaaggcatatctggctttggagtggagttataaccaattagatgataagcagcttaaaccgttgttcttgctatccggaatcatagtgcagcagaaccatatttatgtgcaatacttgttggaatatggtgtgggtttaggtttgtttacaaatgtgaatacattggaagaagcatggaatgcattggatacactgcttggaaagcttaaagattcttgcttgctgctggacagtgatattgagggagttgtcagaatgcatgatcttgtatgtcatgttgctaacctgattgcaaagagggatcatcacatgttatcaatagaatatggaagtgagtttgaagattggccaaataaggatttcttgaaaaagtgcactaggatctctctcatacacgacaatattcccactcttcccgaaatacctatggaatgcccagaactcgagatgttctacttgcataacactaatgatgataacacggtgcaaatcccatccaacttctttagcaagatggaaaaacttaaagtgctggatttaaccaacatggatataccatcattgcctttatctcttcaatacttgaagaagcttcaaacgttgtgtttagatggctgcaaattgggagatataactctactggggcagctaactagcttggaaattcttagtttttcaagatccaatcttaaacacttgcctaaagaagtaaggcaattgacttgtcttcggttgctggatttatcttattgcaataaccttgaagtgatttcgcctactgttatatcaagtttggtgagattggaagatttgagaatgagaaacagttttaaaaaatgggaggttgaaggtggaggaagtaatgcaagcctttcagagctgaagtatttgtctctgctatctgcattagaaatatgtattccgaatgttgatgctcttccagcaaacttgttctcccacaagttagaaagattcaatatttttattggggatgcgtgggatgcgtgggatgcgagatctccatggaagaaacttaggaatgcgatgatcctcaacacattgaaactcaagcttaataaagaattagatgaaagcctaaaatggctattaaagaactctgaagacttgtccttggatgagacggaggttgttgttgtccatgatttgaatgccgaagattttgagaataagatacatctccaactccaaaacaatgttgattttatggctatggttaacaagaaggtcgtgttgcccaacttagcaactttgtcggtgcatggatgtgataatttaaaatttttgttctcattttccatggctaaaagtcttgaacagctcacacatctgaaggtaaccgcctgtaaactcctgcaagagattgtatcatcgacaagagaaggcggtgaggacaatatgaatgaaatgttttctaaacttgaagttttgaagcttgaagaacttccaaacctcgctagattcagcacaggaaattatattgagtttccgtcattgaaaaaattagaggtagaggattgtgacaatctaggggtattcattggtgatgaagtttctatgagtagtaaagacaccagaagctgcaaagaaattgaacaaaggatcttggaagaggaagagaaccttgaagtcaagagtgagactgttgtgaaatactccctctttaacgaaaaggtgggatttcctatcttggaaagattgagcatcaaggggataagggagttgaaggcgatatggcacgtccaacaatctcaaaactctttttggagactcaagcaagttgaggttcgggaatgtgacaatctaataagtttatttccgcctagtgtcatgagaagattggatacgctggaaaccttggagatacggaactgcaaatcactagaagtggtatgtgaggaaattgttgttgcagaagaggaacaagaagttgtagaaacaacaccttctccatttgtatttccaaaagtaacatccgtggagttgaggaatctacctcaacttacgggttgcataaatgcttcacagtggccatcactcaaacgattggaggtggagggatgtgataaagtgggaatttttgccacagaattttctcactttagaacgaaatatgagatggaacctctaatgacgtctcaaaagccactatttctaaccgacaaggattcgttcctcgacttggaacacttaccattgtttggcatggaaatttgggatggaccacccccagcggatcagttggtgtttggcaaattaaaatcaatctgctcttatgggaattgtgcacctttctccaagcaagcttcggtccttttcctccagagattacaaaatcttgaagaaattgaaatgggagacaactcttacgaaagaattagtggttgcactactagcgaagaaatacatgatgatgcagttgggagtgggaccctcccccgtgtaaggagtttgacgctgtcccgtatggaccaactgatggatctagagaacgacaactcccaatcactactttttccaaatttggaaacccttcagctgtggttttgttccagattaaaaagtatagtcatccgcaatatccttccggaatcttacaactttgaaatgatagtggcaagcaatgtgggagacgatgatgctgatgatgcccctggaaatgagattgttttcagccacttgcaacatttgagtctaggtggtctaccaaggctacaaggcttttcctccgaaaattgcacagtcaaattcccatcctccgtgaccttatgggtatatttatgcccgattaagttgaagatttcccctgatggggtcctcctaaaagtaatagaggatcaatgtgagcaaaaaggagatgatgacgttgatagtgatgatgatgatcaacagaaaaatgatgttgaatcagctcggaggactcctaaaatatcatcagaagagcctgctctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1374

Amino Acids

155.75

Weight (kDa)

5.14

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1182
AasI GACNNNNNNGTC 1 cut(s) 620
AatII GACGTC 1 cut(s) 3308
AccB7I CCANNNNNTGG 2 cut(s) 3371, 3649
AccI GTMKAC 2 cut(s) 52, 3874
AccIII TCCGGA 3 cut(s) 417, 1226, 3757
AciI CCGC 7 cut(s) 224, 408, 2511, 2556, 2990, 3404, 3745
AclI AACGTT 1 cut(s) 1751
AclWI GGATC 8 cut(s) 1461, 1541, 1827, 2194, 2780, 3414, 3660, 4014
AcoI YGGCCR 3 cut(s) 966, 1499, 3200
AcuI CTGAAG 6 cut(s) 186, 576, 2054, 2292, 2522, 3689
AcyI GRCGYC 2 cut(s) 1107, 3305
AfaI GTAC 2 cut(s) 48, 354
AfiI CCNNNNNNNGG 7 cut(s) 424, 3352, 3371, 3615, 3649, 3981, 3982
AflII CTTAAG 1 cut(s) 1111
AflIII ACRYGT 2 cut(s) 860, 1461
AhdI GACNNNNNGTC 1 cut(s) 318
AjiI CACGTC 1 cut(s) 2911
AjnI CCWGG 3 cut(s) 270, 752, 3823
AloI GAACNNNNNNTCC 2 cut(s) 3653, 3685
Alw21I GWGCWC 2 cut(s) 1529, 3460
Alw26I GTCTC 7 cut(s) 2049, 2285, 2804, 2932, 3312, 3522, 3795
Alw44I GTGCAC 2 cut(s) 1525, 3456
AlwI GGATC 8 cut(s) 1461, 1541, 1827, 2194, 2780, 3414, 3660, 4014
AlwNI CAGNNNCTG 1 cut(s) 2751
Ama87I CYCGRG 1 cut(s) 1595
Aor13HI TCCGGA 3 cut(s) 417, 1226, 3757
AoxI GGCC 4 cut(s) 966, 1036, 1499, 3200
ApaLI GTGCAC 2 cut(s) 1525, 3456
ApeKI GCWGC 7 cut(s) 134, 1201, 1240, 1375, 1767, 1798, 2751
AseI ATTAAT 1 cut(s) 389
Asp700I GAANNNNTTC 5 cut(s) 189, 287, 663, 2613, 3702
AspS9I GGNCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 7 cut(s) 314, 868, 983, 1106, 1960, 2570, 2726
AvaI CYCGRG 1 cut(s) 1595
AvaII GGWCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
BaeGI GKGCMC 2 cut(s) 1529, 3460
BalI TGGCCA 2 cut(s) 1501, 3202
BarI GAAGNNNNNNTAC 2 cut(s) 2998, 3030
BbsI GAAGAC 3 cut(s) 1123, 1871, 2280
Bbv12I GWGCWC 2 cut(s) 1529, 3460
BbvI GCAGC 7 cut(s) 121, 1213, 1252, 1362, 1754, 1810, 2738
BcgI CGANNNNNNTGC 2 cut(s) 2406, 2440
BciT130I CCWGG 3 cut(s) 272, 754, 3825
BciVI GTATCC 4 cut(s) 490, 750, 1333, 3007
BclI TGATCA 1 cut(s) 4054
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 7 cut(s) 2049, 2285, 2804, 2932, 3312, 3522, 3795
BfmI CTRYAG 1 cut(s) 900
BfrI CTTAAG 1 cut(s) 1111
BfuI GTATCC 4 cut(s) 490, 750, 1333, 3007
BglI GCCNNNNNGGC 1 cut(s) 143
BglII AGATCT 1 cut(s) 2168
BisI GCNGC 7 cut(s) 135, 1202, 1241, 1376, 1768, 1799, 2752
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 7 cut(s) 136, 1203, 1242, 1377, 1769, 1800, 2753
Bme1390I CCNGG 4 cut(s) 272, 656, 754, 3825
Bme18I GGWCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
BmeRI GACNNNNNGTC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 1595
BmgBI CACGTC 1 cut(s) 2911
BmgT120I GGNCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
BmiI GGNNCC 4 cut(s) 3294, 3601, 3602, 3986
BmrFI CCNGG 4 cut(s) 272, 656, 754, 3825
BmrI ACTGGG 2 cut(s) 65, 1802
BmsI GCATC 9 cut(s) 253, 2074, 2134, 2143, 2152, 2883, 3574, 3799, 3808
BmuI ACTGGG 2 cut(s) 65, 1802
BpiI GAAGAC 3 cut(s) 1123, 1871, 2280
BpmI CTGGAG 1 cut(s) 3476
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 2204, 2927
BpuMI CCSGG 1 cut(s) 656
BsaBI GATNNNNATC 1 cut(s) 4053
BsaHI GRCGYC 2 cut(s) 1107, 3305
BsaJI CCNNGG 8 cut(s) 292, 2174, 2283, 2469, 3027, 3147, 3823, 3878
BsaWI WCCGGW 5 cut(s) 204, 417, 443, 1226, 3757
BsaXI ACNNNNNCTCC 6 cut(s) 2090, 2120, 3103, 3133, 3653, 3683
Bsc4I CCNNNNNNNGG 7 cut(s) 424, 3352, 3371, 3615, 3649, 3981, 3982
Bse118I RCCGGY 1 cut(s) 968
Bse1I ACTGG 3 cut(s) 60, 354, 1797
Bse3DI GCAATG 2 cut(s) 1712, 3799
Bse8I GATNNNNATC 1 cut(s) 4053
BseAI TCCGGA 3 cut(s) 417, 1226, 3757
BseBI CCWGG 3 cut(s) 272, 754, 3825
BseDI CCNNGG 8 cut(s) 292, 2174, 2283, 2469, 3027, 3147, 3823, 3878
BseJI GATNNNNATC 1 cut(s) 4053
BseLI CCNNNNNNNGG 7 cut(s) 424, 3352, 3371, 3615, 3649, 3981, 3982
BseMI GCAATG 2 cut(s) 1712, 3799
BseNI ACTGG 3 cut(s) 60, 354, 1797
BseRI GAGGAG 1 cut(s) 561
BseSI GKGCMC 2 cut(s) 1529, 3460
BseXI GCAGC 7 cut(s) 121, 1213, 1252, 1362, 1754, 1810, 2738
BseYI CCCAGC 1 cut(s) 3400
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 4 cut(s) 968, 1038, 1501, 3202
BsiHKAI GWGCWC 2 cut(s) 1529, 3460
BsiHKCI CYCGRG 1 cut(s) 1595
BsiSI CCGG 7 cut(s) 205, 418, 444, 656, 969, 1227, 3758
BslFI GGGAC 4 cut(s) 72, 837, 3613, 3616
BslI CCNNNNNNNGG 7 cut(s) 424, 3352, 3371, 3615, 3649, 3981, 3982
BsmAI GTCTC 7 cut(s) 2049, 2285, 2804, 2932, 3312, 3522, 3795
BsmBI CGTCTC 3 cut(s) 2285, 3312, 3795
BsmFI GGGAC 4 cut(s) 72, 837, 3613, 3616
BsmI GAATGC 5 cut(s) 1336, 1413, 1589, 2197, 2326
BsnI GGCC 4 cut(s) 968, 1038, 1501, 3202
BsoBI CYCGRG 1 cut(s) 1595
Bsp1286I GDGCHC 2 cut(s) 1529, 3460
Bsp13I TCCGGA 3 cut(s) 417, 1226, 3757
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 3 cut(s) 292, 2174, 2469
BspACI CCGC 7 cut(s) 224, 408, 2511, 2556, 2990, 3404, 3745
BspANI GGCC 4 cut(s) 968, 1038, 1501, 3202
BspEI TCCGGA 3 cut(s) 417, 1226, 3757
BspHI TCATGA 1 cut(s) 3000
BspLI GGNNCC 4 cut(s) 3294, 3601, 3602, 3986
BspMAI CTGCAG 1 cut(s) 904
BspPI GGATC 8 cut(s) 1461, 1541, 1827, 2194, 2780, 3414, 3660, 4014
BspQI GCTCTTC 3 cut(s) 727, 2094, 4104
BspTI CTTAAG 1 cut(s) 1111
BsrDI GCAATG 2 cut(s) 1712, 3799
BsrFI RCCGGY 1 cut(s) 968
BsrI ACTGG 3 cut(s) 60, 354, 1797
BssAI RCCGGY 1 cut(s) 968
BssECI CCNNGG 8 cut(s) 292, 2174, 2283, 2469, 3027, 3147, 3823, 3878
BssNI GRCGYC 2 cut(s) 1107, 3305
BssT1I CCWWGG 6 cut(s) 292, 2174, 2283, 2469, 3027, 3878
Bst2UI CCWGG 3 cut(s) 272, 754, 3825
Bst6I CTCTTC 9 cut(s) 465, 727, 1569, 1731, 2094, 2775, 2781, 3081, 4104
BstACI GRCGYC 2 cut(s) 1107, 3305
BstAFI CTTAAG 1 cut(s) 1111
BstAPI GCANNNNNTGC 1 cut(s) 1331
BstC8I GCNNGC 9 cut(s) 111, 268, 588, 1040, 1373, 2020, 3474, 3790, 4116
BstDEI CTNAG 4 cut(s) 329, 1820, 2186, 2413
BstDSI CCRYGG 4 cut(s) 292, 2174, 2469, 3147
BstEII GGTNACC 1 cut(s) 2506
BstMAI GTCTC 7 cut(s) 2049, 2285, 2804, 2932, 3312, 3522, 3795
BstMWI GCNNNNNNNGC 9 cut(s) 143, 1163, 1331, 1354, 2093, 2153, 2162, 3564, 3818
BstNI CCWGG 3 cut(s) 272, 754, 3825
BstNSI RCATGY 2 cut(s) 864, 1465
BstPI GGTNACC 1 cut(s) 2506
BstSCI CCNGG 4 cut(s) 270, 654, 752, 3823
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 2 cut(s) 1529, 3460
BstV1I GCAGC 7 cut(s) 121, 1213, 1252, 1362, 1754, 1810, 2738
BstV2I GAAGAC 3 cut(s) 1123, 1871, 2280
BstX2I RGATCY 5 cut(s) 1533, 1832, 2168, 2772, 3652
BstYI RGATCY 5 cut(s) 1533, 1832, 2168, 2772, 3652
BsuI GTATCC 4 cut(s) 490, 750, 1333, 3007
BsuRI GGCC 4 cut(s) 968, 1038, 1501, 3202
BtgI CCRYGG 4 cut(s) 292, 2174, 2469, 3147
BtgZI GCGATG 1 cut(s) 2210
BtrI CACGTC 1 cut(s) 2911
BtsI GCAGTG 2 cut(s) 82, 1343
BtsIMutI CAGTG 5 cut(s) 82, 500, 1343, 1390, 3203
Cac8I GCNNGC 9 cut(s) 111, 268, 588, 1040, 1373, 2020, 3474, 3790, 4116
CaiI CAGNNNCTG 1 cut(s) 2751
CciI TCATGA 1 cut(s) 3000
Cfr10I RCCGGY 1 cut(s) 968
Cfr13I GGNCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
CseI GACGC 2 cut(s) 1115, 3634
Csp6I GTAC 2 cut(s) 47, 353
CspCI CAANNNNNGTGG 2 cut(s) 3777, 3812
CviQI GTAC 2 cut(s) 47, 353
DdeI CTNAG 4 cut(s) 329, 1820, 2186, 2413
DraI TTTAAA 2 cut(s) 1984, 2448
DrdI GACNNNNNNGTC 1 cut(s) 620
DriI GACNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 3 cut(s) 966, 1499, 3200
Eam1104I CTCTTC 9 cut(s) 465, 727, 1569, 1731, 2094, 2775, 2781, 3081, 4104
Eam1105I GACNNNNNGTC 1 cut(s) 318
EarI CTCTTC 9 cut(s) 465, 727, 1569, 1731, 2094, 2775, 2781, 3081, 4104
EciI GGCGGA 1 cut(s) 2979
Eco130I CCWWGG 6 cut(s) 292, 2174, 2283, 2469, 3027, 3878
Eco147I AGGCCT 1 cut(s) 1038
Eco32I GATATC 1 cut(s) 474
Eco47I GGWCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
Eco57I CTGAAG 6 cut(s) 186, 576, 2054, 2292, 2522, 3689
Eco88I CYCGRG 1 cut(s) 1595
Eco91I GGTNACC 1 cut(s) 2506
EcoO109I RGGNCCY 2 cut(s) 3600, 3985
EcoO65I GGTNACC 1 cut(s) 2506
EcoRII CCWGG 3 cut(s) 270, 752, 3823
EcoRV GATATC 1 cut(s) 474
EcoT14I CCWWGG 6 cut(s) 292, 2174, 2283, 2469, 3027, 3878
EcoT22I ATGCAT 2 cut(s) 1336, 1413
ErhI CCWWGG 6 cut(s) 292, 2174, 2283, 2469, 3027, 3878
Esp3I CGTCTC 3 cut(s) 2285, 3312, 3795
FalI AAGNNNNNCTT 6 cut(s) 1094, 1126, 1499, 1531, 2778, 2810
FaqI GGGAC 4 cut(s) 72, 837, 3613, 3616
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 4054
FblI GTMKAC 2 cut(s) 52, 3874
Fnu4HI GCNGC 7 cut(s) 135, 1202, 1241, 1376, 1768, 1799, 2752
Fsp4HI GCNGC 7 cut(s) 135, 1202, 1241, 1376, 1768, 1799, 2752
GluI GCNGC 7 cut(s) 135, 1202, 1241, 1376, 1768, 1799, 2752
GsaI CCCAGC 1 cut(s) 3404
GsuI CTGGAG 1 cut(s) 3476
HaeIII GGCC 4 cut(s) 968, 1038, 1501, 3202
HapII CCGG 7 cut(s) 205, 418, 444, 656, 969, 1227, 3758
HgaI GACGC 2 cut(s) 1115, 3634
Hin1I GRCGYC 2 cut(s) 1107, 3305
HincII GTYRAC 1 cut(s) 2389
HindII GTYRAC 1 cut(s) 2389
HindIII AAGCTT 6 cut(s) 588, 1355, 1742, 2222, 2603, 3474
HpaI GTTAAC 1 cut(s) 2389
HpaII CCGG 7 cut(s) 205, 418, 444, 656, 969, 1227, 3758
HphI GGTGA 7 cut(s) 314, 868, 983, 1106, 1960, 2570, 2726
Hpy166II GTNNAC 8 cut(s) 53, 580, 1299, 1527, 2389, 2519, 3458, 3875
Hpy8I GTNNAC 8 cut(s) 53, 580, 1299, 1527, 2389, 2519, 3458, 3875
HpyCH4IV ACGT 6 cut(s) 49, 563, 1751, 2910, 3305, 4035
HpyF10VI GCNNNNNNNGC 9 cut(s) 143, 1163, 1331, 1354, 2093, 2153, 2162, 3564, 3818
HpyF3I CTNAG 4 cut(s) 329, 1820, 2186, 2413
HpySE526I ACGT 6 cut(s) 49, 563, 1751, 2910, 3305, 4035
Hsp92I GRCGYC 2 cut(s) 1107, 3305
KflI GGGWCCC 1 cut(s) 3600
Kpn2I TCCGGA 3 cut(s) 417, 1226, 3757
Ksp22I TGATCA 1 cut(s) 4054
KspAI GTTAAC 1 cut(s) 2389
LguI GCTCTTC 3 cut(s) 727, 2094, 4104
Lsp1109I GCAGC 7 cut(s) 121, 1213, 1252, 1362, 1754, 1810, 2738
LweI GCATC 9 cut(s) 253, 2074, 2134, 2143, 2152, 2883, 3574, 3799, 3808
MaeII ACGT 6 cut(s) 49, 563, 1751, 2910, 3305, 4035
MfeI CAATTG 1 cut(s) 1868
MflI RGATCY 5 cut(s) 1533, 1832, 2168, 2772, 3652
MhlI GDGCHC 2 cut(s) 1529, 3460
MlsI TGGCCA 2 cut(s) 1501, 3202
MluNI TGGCCA 2 cut(s) 1501, 3202
MlyI GAGTC 6 cut(s) 451, 503, 748, 2934, 3871, 4084
MmeI TCCRAC 4 cut(s) 1251, 1674, 2377, 2938
Mox20I TGGCCA 2 cut(s) 1501, 3202
Mph1103I ATGCAT 2 cut(s) 1336, 1413
MroI TCCGGA 3 cut(s) 417, 1226, 3757
MroXI GAANNNNTTC 5 cut(s) 189, 287, 663, 2613, 3702
MscI TGGCCA 2 cut(s) 1501, 3202
MslI CAYNNNNRTG 3 cut(s) 1254, 2436, 3582
Msp20I TGGCCA 2 cut(s) 1501, 3202
MspA1I CMGCKG 3 cut(s) 224, 3404, 3709
MspCI CTTAAG 1 cut(s) 1111
MspI CCGG 7 cut(s) 205, 418, 444, 656, 969, 1227, 3758
MspR9I CCNGG 4 cut(s) 272, 656, 754, 3825
MunI CAATTG 1 cut(s) 1868
Mva1269I GAATGC 5 cut(s) 1336, 1413, 1589, 2197, 2326
MvaI CCWGG 3 cut(s) 272, 754, 3825
MwoI GCNNNNNNNGC 9 cut(s) 143, 1163, 1331, 1354, 2093, 2153, 2162, 3564, 3818
NciI CCSGG 1 cut(s) 656
NcoI CCATGG 3 cut(s) 292, 2174, 2469
NlaIV GGNNCC 4 cut(s) 3294, 3601, 3602, 3986
NmuCI GTSAC 7 cut(s) 320, 856, 971, 1054, 2690, 2966, 3931
NsiI ATGCAT 2 cut(s) 1336, 1413
NspI RCATGY 2 cut(s) 864, 1465
PaeR7I CTCGAG 1 cut(s) 1595
PagI TCATGA 1 cut(s) 3000
PceI AGGCCT 1 cut(s) 1038
PciI ACATGT 2 cut(s) 860, 1461
PciSI GCTCTTC 3 cut(s) 727, 2094, 4104
PctI GAATGC 5 cut(s) 1336, 1413, 1589, 2197, 2326
PdmI GAANNNNTTC 5 cut(s) 189, 287, 663, 2613, 3702
PflFI GACNNNGTC 1 cut(s) 3628
PflMI CCANNNNNTGG 2 cut(s) 3371, 3649
PkrI GCNGC 7 cut(s) 136, 1203, 1242, 1377, 1769, 1800, 2753
PleI GAGTC 6 cut(s) 451, 503, 747, 2934, 3870, 4084
PpsI GAGTC 6 cut(s) 451, 503, 747, 2934, 3870, 4084
PpuMI RGGWCCY 2 cut(s) 3600, 3985
PscI ACATGT 2 cut(s) 860, 1461
PshBI ATTAAT 1 cut(s) 389
PsiI TTATAA 1 cut(s) 1182
Psp1406I AACGTT 1 cut(s) 1751
Psp5II RGGWCCY 2 cut(s) 3600, 3985
Psp6I CCWGG 3 cut(s) 270, 752, 3823
PspEI GGTNACC 1 cut(s) 2506
PspFI CCCAGC 1 cut(s) 3400
PspGI CCWGG 3 cut(s) 270, 752, 3823
PspN4I GGNNCC 4 cut(s) 3294, 3601, 3602, 3986
PspPI GGNCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
PspPPI RGGWCCY 2 cut(s) 3600, 3985
PsrI GAACNNNNNNTAC 2 cut(s) 30, 62
PstI CTGCAG 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 2751
PsuI RGATCY 5 cut(s) 1533, 1832, 2168, 2772, 3652
PsyI GACNNNGTC 1 cut(s) 3628
PvuII CAGCTG 1 cut(s) 3709
RsaI GTAC 2 cut(s) 48, 354
RsaNI GTAC 2 cut(s) 47, 353
RseI CAYNNNNRTG 3 cut(s) 1254, 2436, 3582
SapI GCTCTTC 3 cut(s) 727, 2094, 4104
SatI GCNGC 7 cut(s) 135, 1202, 1241, 1376, 1768, 1799, 2752
Sau96I GGNCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
SchI GAGTC 6 cut(s) 451, 503, 748, 2934, 3871, 4084
ScrFI CCNGG 4 cut(s) 272, 656, 754, 3825
SduI GDGCHC 2 cut(s) 1529, 3460
SfaNI GCATC 9 cut(s) 253, 2074, 2134, 2143, 2152, 2883, 3574, 3799, 3808
SfcI CTRYAG 1 cut(s) 900
Sfr274I CTCGAG 1 cut(s) 1595
SinI GGWCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
SlaI CTCGAG 1 cut(s) 1595
SmiMI CAYNNNNRTG 3 cut(s) 1254, 2436, 3582
SmlI CTYRAG 4 cut(s) 1111, 1595, 2219, 2942
SmoI CTYRAG 4 cut(s) 1111, 1595, 2219, 2942
SseBI AGGCCT 1 cut(s) 1038
SsiI CCGC 7 cut(s) 224, 408, 2511, 2556, 2990, 3404, 3745
SspI AATATT 2 cut(s) 1555, 2131
StuI AGGCCT 1 cut(s) 1038
StyD4I CCNGG 4 cut(s) 270, 654, 752, 3823
StyI CCWWGG 6 cut(s) 292, 2174, 2283, 2469, 3027, 3878
TaiI ACGT 6 cut(s) 52, 566, 1754, 2913, 3308, 4038
TaqI TCGA 4 cut(s) 994, 1596, 2543, 3348
TaqII GACCGA 1 cut(s) 3469
TscAI CASTG 5 cut(s) 89, 507, 1350, 1390, 3203
TseFI GTSAC 7 cut(s) 320, 856, 971, 1054, 2690, 2966, 3931
TseI GCWGC 7 cut(s) 134, 1201, 1240, 1375, 1767, 1798, 2751
Tsp45I GTSAC 7 cut(s) 320, 856, 971, 1054, 2690, 2966, 3931
TspDTI ATGAA 8 cut(s) 272, 390, 726, 2256, 2585, 2589, 2698, 2733
TspGWI ACGGA 6 cut(s) 1163, 2309, 2649, 3052, 3136, 3919
TspRI CASTG 5 cut(s) 89, 507, 1350, 1390, 3203
Tth111I GACNNNGTC 1 cut(s) 3628
Van91I CCANNNNNTGG 2 cut(s) 3371, 3649
Vha464I CTTAAG 1 cut(s) 1111
VneI GTGCAC 2 cut(s) 1525, 3456
VpaK11BI GGWCC 5 cut(s) 3392, 3481, 3600, 3640, 3985
VspI ATTAAT 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 3655
XceI RCATGY 2 cut(s) 864, 1465
XhoI CTCGAG 1 cut(s) 1595
XmiI GTMKAC 2 cut(s) 52, 3874
XmnI GAANNNNTTC 5 cut(s) 189, 287, 663, 2613, 3702
ZraI GACGTC 1 cut(s) 3306
Zsp2I ATGCAT 2 cut(s) 1336, 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.