Rroxscaffold_2G00134940

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
72551842 .. 72564869
13028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134940.1

Sequence Viewer

Length: 2406 bp
ATGCATAATGACATTGTTGCAGCTGAAAGAAAAGGTGAAACAATCCAGCCTGATGTTGTGCTGTGGATGACAGAAAGTGATGAGATCACTGGAAAAGCAGAGGAATTATTGAATGATGACCAAGCAAAGATGAAGTGTCTCCTTGATTTTTGTCCTAATCTATTGACCCGTCATCAGCTAAGCAGGAAATCAACAAAGTTGGTGGAGGTGGTTGTTGAGTTGAATGGAAAAGGAGTTTTTCCCAGTATTTCATTTGCTGGTCCTGCTGAAGAGGTATTTCTCATGTCTACCAAAGATTATGAGGCATTTGAATCTAGGAACTTAATTATAAAGGGGATTATAGATGTTTTGAGCAATCCAGATACCAACAAGATTGGGGTGTATGGTATTGGAGGGGTAGGGAAGACCACATTGGTGGAAGAAGTTGTTAGGCGAGTTATGGAAGATAAGCTATTTGATGATGTGGTTATGGTTCGAGATGTGAAAGAAAATCCAGACGTTGGAAGAATTCAAAAGGAAATCGGTGAAAAATTGGGTATGGATTCCAATGCTCTGGAAAATCGATCTATAGCTGAAAAAGCACGTCGGATATGTGGTAGGATATCAAACAAGAAGACTTTGATAGTTCTGGATGATATTTGGAGTTATGTTGATTTGGAAGCCGTGGGACTTCCCGATGTGGCAACTTGTAAAGTATTGTTGACATCTAGAATAAAAGAAGTATTATCCACTGAGATGGGTACGCAGATAAATTTTCAGCTTCTCAACTTAGAGGAAAACGAATGTTGGCAGTTATTCGAAAGCAAGGCCGGTGAAGTTGTTAAAGATCTACGTATTCGAACTGTAGCAGTCCAAGTAGCCAATAGATGTGGTGGTTTGCCGATTTTAGTTGTCACCGTTGCAAGTGCTTTGAAAGAAAGTGCTCTACCCGAGTGGAGAAATGCTCTCAGATGCCTTGAGAAGTTTGAGAAGAGAGGATCGGCAAAACAAGCATTCTTGGCTCTAGAGTGGAGTTATGATCGATTGGATGATGAGGAGCTGAAGCCGTTGTTCTTGCTGTGCGGAGTTATTGCATGGCAGAACTCCATCTTCCTTGAGCACTTGTTGAAACTTGCCATGGGGTTGGGTTTGCTTAAAAACGTTGATACAGTGGAAAAGGCACGAGATTTATCGCTTTCACTGGTTAAAAAGCTGAAAGGTTTTTGTCTTTTGCTAGACACTAATAGTGACACAGCTGTCAGAATGCATGATCTTGTAATTGATGTGGCTGATAATATTGCATCTAGGGACGGACGATTCTTATCAGTAGCATGCGGAGCTGAGTTGAAAAATTGGACAGATGAGGGTTTATTTGGAAAGTGCAGCAAGATCTCAATCAAATCCGACAGTCTCGCAAAACTTTCTGAAGTTTTAGAATTCCAGAAATTAGAAATGTTCCATTTGCGTTGTGAAGACAAGTACCGACTCCAAGTCCCAAACAGTTTTTTTGCAAACATGGAAAAACTCAAAGTGTTGAGTTTAATAAATGTGGAGAATCTTGCATCTCTTGGGTTCTTGAAGAATCTTCAGACTTTGTGTTTAGATAGATGCGAGGTGGAAGACATAGCTGTAGTTGGAGAGCTAAGGAAATTAGAAATTCTCAGCTTGGAATACTCCTATATGATACAACTGCCTAAAGAAATTGGAGAATTGACTTGTCTACGATTGTTGGATTTGACCAGTTGCTATTCCCTTCAAGTGATTGCACCTAATGTTTTATCAAGGTTGACGAGACTAGAAGACTTGAGAATGAGAAACAGCTCTATCAAATGGGAGGCTGAACATGAAGGTGAAAGAAGTAATGCTAGTCTCTCGGAGCTGAAGCACTTGTCTCTACTAACTGCATTGGAAATAAAAATTTCAAATCCTGATATGCTTCCAAAAGACTTATTCTCCGATAAATTAGAAAGATTCCATATACGTATTGGCAATCACTCTTGGCTACATAGGAGCATGAATACGTTGAAACTCCAGTTCACTAGTGGCGACGAATTGGACCAAGGTCTAAAGACGATGGTGAAGAGATCTGAAGATTTGACTTTGCAAGGGGGAGCGAATGTTGATCAAATTGCCTATCAATTAGAAGGCGACAATTTTCGGCAAGTAAAGCATCTTCAACTCGGGGAACTAGATATTACATTCATCATTAATTCCAAGATTGTGTTTTCCAGTTTAATAACCTTGGAAGTGATTGACTGTCATGGTATCAAATTCTTGTTCTCGTCCTCAATGGCCAAAAGTCTAATTCAACTCAGAACTCTCACCATAAGTGGATGTAGAAGCATAGTGGAAATAGTATCCACACAAGAAGACAACGGAGAAAATAATATAGTTAACATGTTTTCTAAACTAGAATCTCGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

801

Amino Acids

90.25

Weight (kDa)

5.46

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 111 - 271 3.5e-30 NB-ARC domain
LRR_14 PF23598 464 - 666 3.4e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 732 - 791 6.5e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 1235
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 2 cut(s) 287, 1699
AciI CCGC 2 cut(s) 1062, 1314
AclI AACGTT 1 cut(s) 1140
AclWI GGATC 1 cut(s) 985
AcoI YGGCCR 1 cut(s) 2271
AcsI RAATTY 6 cut(s) 507, 751, 1415, 1635, 1896, 2249
AcuI CTGAAG 6 cut(s) 288, 1061, 1425, 1550, 1880, 2088
AfaI GTAC 2 cut(s) 742, 1460
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 2376
AhdI GACNNNNNGTC 1 cut(s) 1469
AhlI ACTAGT 1 cut(s) 2018
AjiI CACGTC 1 cut(s) 584
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 413
Alw21I GWGCWC 2 cut(s) 925, 1101
Alw26I GTCTC 5 cut(s) 143, 1394, 1765, 1853, 1875
AlwI GGATC 1 cut(s) 985
Ama87I CYCGRG 2 cut(s) 929, 2159
AoxI GGCC 2 cut(s) 807, 2271
ApeKI GCWGC 2 cut(s) 20, 1362
ApoI RAATTY 6 cut(s) 507, 751, 1415, 1635, 1896, 2249
AseI ATTAAT 1 cut(s) 2187
AspS9I GGNCC 2 cut(s) 260, 2035
AsuHPI GGTGA 7 cut(s) 47, 536, 824, 886, 1841, 2068, 2293
AsuII TTCGAA 2 cut(s) 798, 838
AvaI CYCGRG 2 cut(s) 929, 2159
AvaII GGWCC 2 cut(s) 260, 2035
BalI TGGCCA 1 cut(s) 2273
BarI GAAGNNNNNNTAC 2 cut(s) 2136, 2168
BauI CACGAG 1 cut(s) 1161
BbsI GAAGAC 6 cut(s) 410, 620, 1458, 1605, 1785, 2355
Bbv12I GWGCWC 2 cut(s) 925, 1101
BbvI GCAGC 2 cut(s) 32, 1374
BccI CCATC 3 cut(s) 730, 1094, 2047
BceAI ACGGC 2 cut(s) 647, 1030
BciVI GTATCC 1 cut(s) 2347
BclI TGATCA 1 cut(s) 2101
BcoDI GTCTC 5 cut(s) 143, 1394, 1765, 1853, 1875
BcuI ACTAGT 1 cut(s) 2018
BfmI CTRYAG 3 cut(s) 567, 843, 1608
BfuI GTATCC 1 cut(s) 2347
BglII AGATCT 3 cut(s) 826, 1368, 2063
BisI GCNGC 2 cut(s) 21, 1363
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 2 cut(s) 22, 1364
Bme18I GGWCC 2 cut(s) 260, 2035
BmeRI GACNNNNNGTC 1 cut(s) 1469
BmeT110I CYCGRG 2 cut(s) 929, 2159
BmgBI CACGTC 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 260, 2035
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 5 cut(s) 941, 1289, 1550, 1577, 2158
BmuI ACTGGG 1 cut(s) 237
BoxI GACNNNNGTC 1 cut(s) 2040
BpiI GAAGAC 6 cut(s) 410, 620, 1458, 1605, 1785, 2355
BplI GAGNNNNNCTC 2 cut(s) 928, 960
BpmI CTGGAG 1 cut(s) 1994
Bpu10I CCTNAGC 1 cut(s) 1622
Bpu1102I GCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 2 cut(s) 798, 838
BpuEI CTTGAG 3 cut(s) 977, 1115, 1804
Bsa29I ATCGAT 2 cut(s) 562, 1021
BsaAI YACGTR 2 cut(s) 833, 1961
BsaBI GATNNNNATC 2 cut(s) 1300, 1373
BsaJI CCNNGG 4 cut(s) 663, 1116, 2038, 2220
BsaXI ACNNNNNCTCC 4 cut(s) 1916, 1946, 2082, 2112
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse118I RCCGGY 1 cut(s) 809
Bse1I ACTGG 6 cut(s) 94, 243, 1185, 1719, 2011, 2208
Bse8I GATNNNNATC 2 cut(s) 1300, 1373
BseCI ATCGAT 2 cut(s) 562, 1021
BseDI CCNNGG 4 cut(s) 663, 1116, 2038, 2220
BseGI GGATG 4 cut(s) 72, 637, 1033, 2318
BseJI GATNNNNATC 2 cut(s) 1300, 1373
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 5 cut(s) 723, 961, 1311, 1654, 2305
BseNI ACTGG 6 cut(s) 94, 243, 1185, 1719, 2011, 2208
BseRI GAGGAG 1 cut(s) 1049
BseXI GCAGC 2 cut(s) 32, 1374
BsgI GTGCAG 1 cut(s) 1381
BshFI GGCC 2 cut(s) 809, 2273
BshVI ATCGAT 2 cut(s) 562, 1021
BsiHKAI GWGCWC 2 cut(s) 925, 1101
BsiHKCI CYCGRG 2 cut(s) 929, 2159
BsiSI CCGG 1 cut(s) 810
BslFI GGGAC 3 cut(s) 681, 1301, 1457
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 5 cut(s) 143, 1394, 1765, 1853, 1875
BsmFI GGGAC 3 cut(s) 681, 1301, 1457
BsmI GAATGC 2 cut(s) 992, 1248
BsnI GGCC 2 cut(s) 809, 2273
BsoBI CYCGRG 2 cut(s) 929, 2159
Bsp119I TTCGAA 2 cut(s) 798, 838
Bsp1286I GDGCHC 2 cut(s) 925, 1101
Bsp143I GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
Bsp1720I GCTNAGC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 1116
BspACI CCGC 2 cut(s) 1062, 1314
BspANI GGCC 2 cut(s) 809, 2273
BspCNI CTCAG 5 cut(s) 724, 960, 1312, 1653, 2304
BspDI ATCGAT 2 cut(s) 562, 1021
BspPI GGATC 1 cut(s) 985
BspT104I TTCGAA 2 cut(s) 798, 838
BsrFI RCCGGY 1 cut(s) 809
BsrI ACTGG 6 cut(s) 94, 243, 1185, 1719, 2011, 2208
BssAI RCCGGY 1 cut(s) 809
BssECI CCNNGG 4 cut(s) 663, 1116, 2038, 2220
BssMI GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
BssSI CACGAG 1 cut(s) 1161
BssT1I CCWWGG 3 cut(s) 1116, 2038, 2220
Bst2BI CACGAG 1 cut(s) 1161
Bst4CI ACNGT 6 cut(s) 844, 898, 1150, 1388, 1481, 2237
Bst6I CTCTTC 3 cut(s) 264, 965, 2054
BstBAI YACGTR 2 cut(s) 833, 1961
BstBI TTCGAA 2 cut(s) 798, 838
BstC8I GCNNGC 1 cut(s) 1312
BstDEI CTNAG 8 cut(s) 179, 732, 769, 947, 1320, 1622, 1640, 2291
BstDSI CCRYGG 2 cut(s) 663, 1116
BstF5I GGATG 4 cut(s) 72, 637, 1033, 2318
BstKTI GATC 9 cut(s) 87, 566, 829, 980, 1021, 1252, 1371, 2066, 2104
BstMAI GTCTC 5 cut(s) 143, 1394, 1765, 1853, 1875
BstMBI GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
BstMWI GCNNNNNNNGC 6 cut(s) 263, 578, 989, 998, 1316, 2146
BstNSI RCATGY 2 cut(s) 1314, 2380
BstPAI GACNNNNGTC 1 cut(s) 2040
BstSFI CTRYAG 3 cut(s) 567, 843, 1608
BstSNI TACGTA 2 cut(s) 833, 1961
BstV1I GCAGC 2 cut(s) 32, 1374
BstV2I GAAGAC 6 cut(s) 410, 620, 1458, 1605, 1785, 2355
BstX2I RGATCY 3 cut(s) 826, 1368, 2063
BstXI CCANNNNNNTGG 4 cut(s) 415, 553, 736, 1123
BstYI RGATCY 3 cut(s) 826, 1368, 2063
Bsu15I ATCGAT 2 cut(s) 562, 1021
BsuI GTATCC 1 cut(s) 2347
BsuRI GGCC 2 cut(s) 809, 2273
BsuTUI ATCGAT 2 cut(s) 562, 1021
BtgI CCRYGG 2 cut(s) 663, 1116
BtrI CACGTC 1 cut(s) 584
BtsCI GGATG 4 cut(s) 72, 637, 1033, 2318
BtsIMutI CAGTG 4 cut(s) 87, 729, 1155, 1178
Cac8I GCNNGC 1 cut(s) 1312
Cfr10I RCCGGY 1 cut(s) 809
Cfr13I GGNCC 2 cut(s) 260, 2035
ClaI ATCGAT 2 cut(s) 562, 1021
Csp6I GTAC 2 cut(s) 741, 1459
CspCI CAANNNNNGTGG 4 cut(s) 183, 218, 850, 885
CviQI GTAC 2 cut(s) 741, 1459
DdeI CTNAG 8 cut(s) 179, 732, 769, 947, 1320, 1622, 1640, 2291
DpnI GATC 9 cut(s) 86, 565, 828, 979, 1020, 1251, 1370, 2065, 2103
DpnII GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
DrdI GACNNNNNNGTC 1 cut(s) 1235
DriI GACNNNNNGTC 1 cut(s) 1469
DseDI GACNNNNNNGTC 1 cut(s) 1235
EaeI YGGCCR 1 cut(s) 2271
Eam1104I CTCTTC 3 cut(s) 264, 965, 2054
Eam1105I GACNNNNNGTC 1 cut(s) 1469
EarI CTCTTC 3 cut(s) 264, 965, 2054
Eco105I TACGTA 2 cut(s) 833, 1961
Eco130I CCWWGG 3 cut(s) 1116, 2038, 2220
Eco32I GATATC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 260, 2035
Eco57I CTGAAG 6 cut(s) 288, 1061, 1425, 1550, 1880, 2088
Eco88I CYCGRG 2 cut(s) 929, 2159
EcoRI GAATTC 2 cut(s) 507, 1415
EcoRV GATATC 1 cut(s) 603
EcoT14I CCWWGG 3 cut(s) 1116, 2038, 2220
EcoT22I ATGCAT 2 cut(s) 6, 1248
ErhI CCWWGG 3 cut(s) 1116, 2038, 2220
FaqI GGGAC 3 cut(s) 681, 1301, 1457
FbaI TGATCA 1 cut(s) 2101
FblI GTMKAC 2 cut(s) 287, 1699
Fnu4HI GCNGC 2 cut(s) 21, 1363
FokI GGATG 4 cut(s) 79, 644, 1040, 2325
Fsp4HI GCNGC 2 cut(s) 21, 1363
GluI GCNGC 2 cut(s) 21, 1363
GsuI CTGGAG 1 cut(s) 1994
HaeIII GGCC 2 cut(s) 809, 2273
HapII CCGG 1 cut(s) 810
HincII GTYRAC 3 cut(s) 702, 1767, 2374
HindII GTYRAC 3 cut(s) 702, 1767, 2374
HinfI GANTC 8 cut(s) 311, 542, 1296, 1464, 1534, 1561, 1950, 2393
HpaI GTTAAC 1 cut(s) 2374
HpaII CCGG 1 cut(s) 810
HphI GGTGA 7 cut(s) 47, 536, 824, 886, 1841, 2068, 2293
Hpy166II GTNNAC 6 cut(s) 288, 702, 1700, 1767, 2016, 2374
Hpy8I GTNNAC 6 cut(s) 288, 702, 1700, 1767, 2016, 2374
Hpy99I CGWCG 2 cut(s) 588, 2030
HpyAV CCTTC 3 cut(s) 1742, 1820, 2117
HpyCH4III ACNGT 6 cut(s) 844, 898, 1150, 1388, 1481, 2237
HpyCH4IV ACGT 6 cut(s) 498, 583, 832, 1140, 1960, 2000
HpyF10VI GCNNNNNNNGC 6 cut(s) 263, 578, 989, 998, 1316, 2146
HpyF3I CTNAG 8 cut(s) 179, 732, 769, 947, 1320, 1622, 1640, 2291
HpySE526I ACGT 6 cut(s) 498, 583, 832, 1140, 1960, 2000
Ksp22I TGATCA 1 cut(s) 2101
KspAI GTTAAC 1 cut(s) 2374
Kzo9I GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
LmnI GCTCC 5 cut(s) 1036, 1316, 1855, 1989, 2090
Lsp1109I GCAGC 2 cut(s) 32, 1374
LweI GCATC 5 cut(s) 941, 1289, 1550, 1577, 2158
MaeII ACGT 6 cut(s) 498, 583, 832, 1140, 1960, 2000
MaeIII GTNAC 2 cut(s) 892, 1226
MalI GATC 9 cut(s) 86, 565, 828, 979, 1020, 1251, 1370, 2065, 2103
MboI GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
MflI RGATCY 3 cut(s) 826, 1368, 2063
MhlI GDGCHC 2 cut(s) 925, 1101
MlsI TGGCCA 1 cut(s) 2273
MluNI TGGCCA 1 cut(s) 2273
MlyI GAGTC 1 cut(s) 1458
MmeI TCCRAC 5 cut(s) 481, 566, 1407, 1594, 1689
Mox20I TGGCCA 1 cut(s) 2273
Mph1103I ATGCAT 2 cut(s) 6, 1248
MscI TGGCCA 1 cut(s) 2273
MseI TTAA 9 cut(s) 323, 822, 1134, 1185, 1520, 2187, 2213, 2373, 2404
MslI CAYNNNNRTG 3 cut(s) 413, 734, 1827
Msp20I TGGCCA 1 cut(s) 2273
MspA1I CMGCKG 2 cut(s) 23, 1235
MspI CCGG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 992, 1248
MwoI GCNNNNNNNGC 6 cut(s) 263, 578, 989, 998, 1316, 2146
NcoI CCATGG 1 cut(s) 1116
NdeII GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
NmuCI GTSAC 2 cut(s) 892, 1226
NsiI ATGCAT 2 cut(s) 6, 1248
NspI RCATGY 2 cut(s) 1314, 2380
NspV TTCGAA 2 cut(s) 798, 838
OliI CACNNNNGTG 1 cut(s) 413
PaeI GCATGC 1 cut(s) 1314
PciI ACATGT 1 cut(s) 2376
PctI GAATGC 2 cut(s) 992, 1248
PfeI GAWTC 7 cut(s) 311, 542, 1296, 1534, 1561, 1950, 2393
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 2 cut(s) 22, 1364
PleI GAGTC 1 cut(s) 1458
PpsI GAGTC 1 cut(s) 1458
Ppu21I YACGTR 2 cut(s) 833, 1961
PscI ACATGT 1 cut(s) 2376
PshAI GACNNNNGTC 1 cut(s) 2040
PshBI ATTAAT 1 cut(s) 2187
PsiI TTATAA 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 1140
PspPI GGNCC 2 cut(s) 260, 2035
PsuI RGATCY 3 cut(s) 826, 1368, 2063
PvuII CAGCTG 2 cut(s) 23, 1235
RsaI GTAC 2 cut(s) 742, 1460
RsaNI GTAC 2 cut(s) 741, 1459
RseI CAYNNNNRTG 3 cut(s) 413, 734, 1827
SaqAI TTAA 9 cut(s) 323, 822, 1134, 1185, 1520, 2187, 2213, 2373, 2404
SatI GCNGC 2 cut(s) 21, 1363
Sau3AI GATC 9 cut(s) 84, 563, 826, 977, 1018, 1249, 1368, 2063, 2101
Sau96I GGNCC 2 cut(s) 260, 2035
SchI GAGTC 1 cut(s) 1458
SduI GDGCHC 2 cut(s) 925, 1101
SfaNI GCATC 5 cut(s) 941, 1289, 1550, 1577, 2158
SfcI CTRYAG 3 cut(s) 567, 843, 1608
SfuI TTCGAA 2 cut(s) 798, 838
SinI GGWCC 2 cut(s) 260, 2035
SmiMI CAYNNNNRTG 3 cut(s) 413, 734, 1827
SmlI CTYRAG 3 cut(s) 956, 1094, 1783
SmoI CTYRAG 3 cut(s) 956, 1094, 1783
SnaBI TACGTA 2 cut(s) 833, 1961
SpeI ACTAGT 1 cut(s) 2018
SphI GCATGC 1 cut(s) 1314
SsiI CCGC 2 cut(s) 1062, 1314
SspI AATATT 1 cut(s) 1276
StyI CCWWGG 3 cut(s) 1116, 2038, 2220
TaaI ACNGT 6 cut(s) 844, 898, 1150, 1388, 1481, 2237
TaiI ACGT 6 cut(s) 501, 586, 835, 1143, 1963, 2003
TaqI TCGA 6 cut(s) 475, 562, 798, 838, 1021, 2398
TfiI GAWTC 7 cut(s) 311, 542, 1296, 1534, 1561, 1950, 2393
Tru1I TTAA 9 cut(s) 323, 822, 1134, 1185, 1520, 2187, 2213, 2373, 2404
Tru9I TTAA 9 cut(s) 323, 822, 1134, 1185, 1520, 2187, 2213, 2373, 2404
TscAI CASTG 4 cut(s) 94, 736, 1155, 1185
TseFI GTSAC 2 cut(s) 892, 1226
TseI GCWGC 2 cut(s) 20, 1362
Tsp45I GTSAC 2 cut(s) 892, 1226
TspDTI ATGAA 5 cut(s) 146, 240, 1839, 2009, 2170
TspGWI ACGGA 2 cut(s) 1305, 2370
TspRI CASTG 4 cut(s) 94, 736, 1155, 1185
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 260, 2035
VspI ATTAAT 1 cut(s) 2187
XapI RAATTY 6 cut(s) 507, 751, 1415, 1635, 1896, 2249
XbaI TCTAGA 2 cut(s) 707, 1003
XceI RCATGY 2 cut(s) 1314, 2380
XcmI CCANNNNNNNNNTGG 2 cut(s) 1961, 2018
XmiI GTMKAC 2 cut(s) 287, 1699
Zsp2I ATGCAT 2 cut(s) 6, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.