Rroxscaffold_5G00342790

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000042
Physical Location & Seq
Reverse (-)
11900726 .. 11906229
5504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342790.1

Sequence Viewer

Length: 1563 bp
ATGGAGTTTCTTGTTGAAATTGGTACTGTAATTGTTGGAAAGATTGCTGAGTTCACAGTTGCACCAGTTATACGCCAAGTGGGTTATGTAATCTACTACCACAAGAACATCAAAGAACTAGAGAGTCAAGTAGATGACTTGGGTGCTGCCAGAGAAAGCGTGAAGCATGCTGTTGAAACAGAGAAAAGAAAAGGTAGAGAAATTAAAGCAGGTGTCCAGAATTGGCTGACTAAAGTGGATGAGATGACTGAAAAAGCAAATGATTTCTTGAAAGATGAACAGCGTGTAGAGACTAGATGTCTCCGTGGCTTTTGTCCTAATCTAAAGGTTCGCCATCATCGCAGCAGGAAATCAACAAAATTGGTTCAAAAAGTTGCTGAGCTCTATGGAAAAAAAGATTTTGGCGATATTGCATACGATGTCAAACCAGAGGAGAATGTTGCTGAAAAGAACGAAGACTTGTACTTGGAGGGGAAGGAGGGTGTAAATAATAATATTGTCTATCAAATAGGCGCTGAAGGTTTTCAGAAATTGAAGCATCTCCATCTCCAAACGAATGCCAAGTTTACGTATATCATAAATGGGAAGGTTAGGTATCCCAACTTAACATGGTTGGCGGTGAATGAACTCAATGGTTTAACATTCTTGTTATCATCTTCAATGGCTAGAAGCCTTGCACAACTCAAACGTCTTGAGGTATCAGAATGTCAAATAATGGAAGAGATAGTATCAGCAGAATCTAATGAAGAAATTGTAGACAACTTCTTTTGCCAGCTACAAATTCTGGAGTTAAAAGACATTCCAAATCTCACTAAATTCTGCTCAAGAAACTGTACTGAACTTTCAAATCCATCCTCCGGGATACAACACTTTCTTTTTGACAATAAGGATTCATTCCCCAATTTGGAAAAGTTAGGCTTGGACATAATGGAGAATTGGGATGGTGCGCCACTCCACCTGTATAGGAAGCTCAAATATCTTTACAGTTACGCATACACCAATTCATCTTTGACTTCTCTGGAGAAATTACTTGGTGTTGAAAAAGTCAATGTGAGTAGTAATGGAGAAATACATGTAGTTGGGGATGGGACCCTCCCACATTTAAGAGAGTTGCACCTTTACGGGATGCGGAAGCTGATGAATCTTGGGGACGATAACTTCGGACTTGCATGCCCATATTTTCCAAATCTAGAAATTCTGAAGCTAGAGGATTGTGACAGCTTAAAGAATTTAAGATCATCCGCAATGTCCTTCAAGAATCTAACAACTTTGCAAGTAACTCGTTGTAAGGGATTGAAATACTTGATATCTTACTCCATAGCCAAAAGTTTGATGCATCTCACAAAACTGGAAGTCCAAGATTGTGAGGAAATGATAGAAATAGTGGGGAGCAATGAAAATGATGATTCAGAAAATGAGATTGAATTCGGGGTGATGAAACATTTGGAACTTTCTCGCTCTACCGAGTCTAAGAGGCTTTTGCTCGAGAACTCGCATTGTCAAATTTCCATCCTTAGAAAAATTATCCATGAGTTGTACTCAACTAGAGACGTTCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

520

Amino Acids

59.53

Weight (kDa)

6.03

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 178 - 279 8.6e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 415 - 456 6.2e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 756
AciI CCGC 3 cut(s) 617, 1129, 1242
AcsI RAATTY 6 cut(s) 780, 815, 1194, 1228, 1424, 1503
AcuI CTGAAG 2 cut(s) 537, 1220
AfaI GTAC 4 cut(s) 25, 464, 835, 1538
AfiI CCNNNNNNNGG 2 cut(s) 857, 904
AflIII ACRYGT 1 cut(s) 1072
AhdI GACNNNNNGTC 1 cut(s) 297
AluBI AGCT 6 cut(s) 382, 775, 970, 1135, 1204, 1221
AluI AGCT 6 cut(s) 382, 775, 970, 1135, 1204, 1221
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 3 cut(s) 284, 305, 1542
Ama87I CYCGRG 1 cut(s) 1484
ApeKI GCWGC 2 cut(s) 146, 342
ApoI RAATTY 6 cut(s) 780, 815, 1194, 1228, 1424, 1503
ArsI GACNNNNNNTTYG 2 cut(s) 1142, 1174
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 515, 949
AspS9I GGNCC 1 cut(s) 1089
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 2 cut(s) 631, 1444
AvaI CYCGRG 1 cut(s) 1484
AvaII GGWCC 1 cut(s) 1089
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 133, 354
BccI CCATC 6 cut(s) 342, 552, 859, 935, 1079, 1517
BcgI CGANNNNNNTGC 2 cut(s) 1262, 1296
BciVI GTATCC 2 cut(s) 606, 855
BcnI CCSGG 1 cut(s) 859
BcoDI GTCTC 3 cut(s) 284, 305, 1542
BfaI CTAG 6 cut(s) 119, 294, 666, 1190, 1205, 1545
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 200
BfuI GTATCC 2 cut(s) 606, 855
BisI GCNGC 2 cut(s) 147, 343
BlpI GCTNAGC 1 cut(s) 378
BlsI GCNGC 2 cut(s) 148, 344
Bme1390I CCNGG 1 cut(s) 859
Bme18I GGWCC 1 cut(s) 1089
BmeRI GACNNNNNGTC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 1484
BmgT120I GGNCC 1 cut(s) 1089
BmiI GGNNCC 2 cut(s) 1090, 1091
BmrFI CCNGG 1 cut(s) 859
BmsI GCATC 4 cut(s) 547, 1116, 1323, 1345
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 1523, 1555
BpmI CTGGAG 2 cut(s) 806, 1040
Bpu1102I GCTNAGC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 713, 808
BpuMI CCSGG 1 cut(s) 859
BsaAI YACGTR 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 857, 904
Bse1I ACTGG 2 cut(s) 65, 1353
Bse3DI GCAATG 2 cut(s) 1251, 1399
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 7 cut(s) 244, 851, 946, 1090, 1131, 1238, 1509
BseLI CCNNNNNNNGG 2 cut(s) 857, 904
BseMI GCAATG 2 cut(s) 1251, 1399
BseMII CTCAG 2 cut(s) 39, 369
BseNI ACTGG 2 cut(s) 65, 1353
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 133, 354
BsiHKAI GWGCWC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 1484
BsiSI CCGG 1 cut(s) 858
BslFI GGGAC 2 cut(s) 1102, 1163
BslI CCNNNNNNNGG 2 cut(s) 857, 904
BsmAI GTCTC 3 cut(s) 284, 305, 1542
BsmBI CGTCTC 1 cut(s) 1542
BsmFI GGGAC 2 cut(s) 1102, 1163
BsmI GAATGC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 1484
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 1 cut(s) 1235
Bsp1720I GCTNAGC 1 cut(s) 378
BspACI CCGC 3 cut(s) 617, 1129, 1242
BspCNI CTCAG 2 cut(s) 40, 370
BspLI GGNNCC 2 cut(s) 1090, 1091
BspMI ACCTGC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 1251, 1399
BsrI ACTGG 2 cut(s) 65, 1353
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 1235
Bst4CI ACNGT 4 cut(s) 28, 58, 833, 986
Bst6I CTCTTC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 168, 773, 1171
BstDEI CTNAG 4 cut(s) 48, 378, 1470, 1514
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 7 cut(s) 244, 851, 946, 1090, 1131, 1238, 1509
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 515, 949
BstKTI GATC 1 cut(s) 1238
BstMAI GTCTC 3 cut(s) 284, 305, 1542
BstMBI GATC 1 cut(s) 1235
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNSI RCATGY 3 cut(s) 170, 1076, 1173
BstSCI CCNGG 1 cut(s) 857
BstSNI TACGTA 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 133, 354
BstV2I GAAGAC 1 cut(s) 462
BsuI GTATCC 2 cut(s) 606, 855
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 7 cut(s) 244, 851, 946, 1090, 1131, 1238, 1509
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 3 cut(s) 168, 773, 1171
CfoI GCGC 2 cut(s) 515, 949
Cfr13I GGNCC 1 cut(s) 1089
Csp6I GTAC 4 cut(s) 24, 463, 834, 1537
CviAII CATG 5 cut(s) 167, 609, 1073, 1170, 1529
CviQI GTAC 4 cut(s) 24, 463, 834, 1537
DdeI CTNAG 4 cut(s) 48, 378, 1470, 1514
DpnI GATC 1 cut(s) 1237
DpnII GATC 1 cut(s) 1235
DriI GACNNNNNGTC 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 714
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 382
Eco105I TACGTA 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 1308
Eco47I GGWCC 1 cut(s) 1089
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 537, 1220
Eco88I CYCGRG 1 cut(s) 1484
EcoICRI GAGCTC 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 1089
EcoRI GAATTC 1 cut(s) 1424
EcoRV GATATC 1 cut(s) 1308
EcoT22I ATGCAT 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 1542
FaeI CATG 5 cut(s) 170, 612, 1076, 1173, 1532
FalI AAGNNNNNCTT 2 cut(s) 902, 934
FaqI GGGAC 2 cut(s) 1102, 1163
FatI CATG 5 cut(s) 166, 608, 1072, 1169, 1528
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 2 cut(s) 147, 343
FokI GGATG 7 cut(s) 251, 838, 953, 1097, 1138, 1225, 1496
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 147, 343
FspBI CTAG 6 cut(s) 119, 294, 666, 1190, 1205, 1545
GlaI GCGC 2 cut(s) 514, 948
GluI GCNGC 2 cut(s) 147, 343
GsuI CTGGAG 2 cut(s) 806, 1040
HaeII RGCGCY 1 cut(s) 516
HapII CCGG 1 cut(s) 858
HhaI GCGC 2 cut(s) 515, 949
Hin1II CATG 5 cut(s) 170, 612, 1076, 1173, 1532
Hin6I GCGC 2 cut(s) 513, 947
HinP1I GCGC 2 cut(s) 513, 947
HinfI GANTC 7 cut(s) 124, 737, 890, 1141, 1258, 1406, 1466
HpaII CCGG 1 cut(s) 858
HphI GGTGA 2 cut(s) 631, 1444
Hpy166II GTNNAC 3 cut(s) 54, 567, 757
Hpy188I TCNGA 5 cut(s) 528, 703, 1163, 1200, 1411
Hpy188III TCNNGA 9 cut(s) 217, 268, 692, 785, 825, 1019, 1190, 1255, 1486
Hpy8I GTNNAC 3 cut(s) 54, 567, 757
HpyAV CCTTC 4 cut(s) 469, 512, 580, 1261
HpyCH4III ACNGT 4 cut(s) 28, 58, 833, 986
HpyCH4IV ACGT 3 cut(s) 569, 688, 1551
HpyCH4V TGCA 7 cut(s) 62, 413, 677, 1114, 1169, 1273, 1336
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 4 cut(s) 48, 378, 1470, 1514
HpySE526I ACGT 3 cut(s) 569, 688, 1551
Hsp92II CATG 5 cut(s) 170, 612, 1076, 1173, 1532
HspAI GCGC 2 cut(s) 513, 947
KflI GGGWCCC 1 cut(s) 1089
Kzo9I GATC 1 cut(s) 1235
LmnI GCTCC 1 cut(s) 1389
Lsp1109I GCAGC 2 cut(s) 133, 354
LweI GCATC 4 cut(s) 547, 1116, 1323, 1345
MaeI CTAG 6 cut(s) 119, 294, 666, 1190, 1205, 1545
MaeII ACGT 3 cut(s) 569, 688, 1551
MaeIII GTNAC 3 cut(s) 986, 1214, 1276
MalI GATC 1 cut(s) 1237
MboI GATC 1 cut(s) 1235
MboII GAAGA 4 cut(s) 467, 648, 731, 758
MhlI GDGCHC 1 cut(s) 384
MlyI GAGTC 2 cut(s) 133, 1475
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 9 cut(s) 424, 463, 472, 688, 865, 1103, 1201, 1360, 1467
Mph1103I ATGCAT 1 cut(s) 1338
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 7 cut(s) 204, 605, 638, 791, 1103, 1223, 1232
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 1 cut(s) 859
Mva1269I GAATGC 1 cut(s) 562
MwoI GCNNNNNNNGC 1 cut(s) 339
NciI CCSGG 1 cut(s) 859
NdeII GATC 1 cut(s) 1235
NlaIII CATG 5 cut(s) 170, 612, 1076, 1173, 1532
NlaIV GGNNCC 2 cut(s) 1090, 1091
NmuCI GTSAC 1 cut(s) 1214
NsiI ATGCAT 1 cut(s) 1338
NspI RCATGY 3 cut(s) 170, 1076, 1173
PaeI GCATGC 2 cut(s) 170, 1173
PaeR7I CTCGAG 1 cut(s) 1484
PaqCI CACCTGC 1 cut(s) 200
PciI ACATGT 1 cut(s) 1072
PctI GAATGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 5 cut(s) 737, 890, 1141, 1258, 1406
PfoI TCCNGGA 1 cut(s) 857
PkrI GCNGC 2 cut(s) 148, 344
PleI GAGTC 2 cut(s) 132, 1474
PpsI GAGTC 2 cut(s) 132, 1474
Ppu21I YACGTR 1 cut(s) 570
PpuMI RGGWCCY 1 cut(s) 1089
PscI ACATGT 1 cut(s) 1072
Psp124BI GAGCTC 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 1089
PspN4I GGNNCC 2 cut(s) 1090, 1091
PspPI GGNCC 1 cut(s) 1089
PspPPI RGGWCCY 1 cut(s) 1089
RsaI GTAC 4 cut(s) 25, 464, 835, 1538
RsaNI GTAC 4 cut(s) 24, 463, 834, 1537
SacI GAGCTC 1 cut(s) 384
SaqAI TTAA 7 cut(s) 204, 605, 638, 791, 1103, 1223, 1232
SatI GCNGC 2 cut(s) 147, 343
Sau3AI GATC 1 cut(s) 1235
Sau96I GGNCC 1 cut(s) 1089
SchI GAGTC 2 cut(s) 133, 1475
ScrFI CCNGG 1 cut(s) 859
SduI GDGCHC 1 cut(s) 384
SfaNI GCATC 4 cut(s) 547, 1116, 1323, 1345
Sfr274I CTCGAG 1 cut(s) 1484
SinI GGWCC 1 cut(s) 1089
SlaI CTCGAG 1 cut(s) 1484
SmlI CTYRAG 3 cut(s) 692, 823, 1484
SmoI CTYRAG 3 cut(s) 692, 823, 1484
SnaBI TACGTA 1 cut(s) 570
SphI GCATGC 2 cut(s) 170, 1173
SsiI CCGC 3 cut(s) 617, 1129, 1242
SspI AATATT 1 cut(s) 496
SspMI CTAG 6 cut(s) 119, 294, 666, 1190, 1205, 1545
SstI GAGCTC 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 28, 58, 833, 986
TaiI ACGT 3 cut(s) 572, 691, 1554
TaqI TCGA 1 cut(s) 1485
TatI WGTACW 3 cut(s) 462, 833, 1536
TfiI GAWTC 5 cut(s) 737, 890, 1141, 1258, 1406
Tru1I TTAA 7 cut(s) 204, 605, 638, 791, 1103, 1223, 1232
Tru9I TTAA 7 cut(s) 204, 605, 638, 791, 1103, 1223, 1232
TseFI GTSAC 1 cut(s) 1214
TseI GCWGC 2 cut(s) 146, 342
Tsp45I GTSAC 1 cut(s) 1214
TspDTI ATGAA 9 cut(s) 291, 639, 759, 882, 993, 1154, 1410, 1451, 1544
TspGWI ACGGA 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 1089
XapI RAATTY 6 cut(s) 780, 815, 1194, 1228, 1424, 1503
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 3 cut(s) 170, 1076, 1173
XhoI CTCGAG 1 cut(s) 1484
XmiI GTMKAC 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 6 cut(s) 119, 294, 666, 1190, 1205, 1545
Zsp2I ATGCAT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.