Rroxscaffold_3G00253840

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
47991754 .. 47996615
4862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253840.1

Sequence Viewer

Length: 2628 bp
ATGACGTCCAATCAGAACCATCTCCGGCCTCACAAAATCAAGAAAGAAGTCAGAACTATAGACATGGATATTCTTGTTGCAATTGCTGGAAAACTTGCCGAGTACTCAGTTGCACCAATTGGACGCCAAGTGGGTTATCTAGCTCACTACAAAAGCAACCATGAAAAGCTGCAGACCAAATTGAGGGGATTAATTGCTGTCAGAGATGGGGTTCAACATAAGGTTGATCATGTTAAGAGAGAAGGTAAAAGAATCGAGGCTACTGTTCTGAACTGGAAGAAAGATGTGGATGCAATCATCACAGAGGCAGAGGAATTCCTGAAAGAAGGCCGCCATGGGCAGACCGAGTGTCTTCATGGTTTTTGTCCTCATTTGGTGCTCCGTTATCGACTAAGCAGGAAATCAACAAAATTGGCGGAGGAGATTGATGAACTTGATCGAAAAAAGGAGTTCTCCAACTTTGCATATGATGTTCCTCTACAAGAGGTATGTCTTTCATCTGCCGGGCATTACAGTACATTTGATTCAAGGAATTCAATTGTGATGAGAGTCATGGATGAACTGAGAAATCCTAATACAGAAATGATTCTGGTATGGGGAATCGGTGGAGTAGGGAAGACTACACTCGTTGAAGAAGTTCTTAGGCAAGCTAAGGATGTCAGCTTATTTGATGATTTGGTGATGGTGAGAGATGTGAAAGAGAACCCAGACCTTGAAAAAATCCAAAAAGAAATTGCCATGAAGTTGGGTATGAGCATTGAGGAAAAACATACTCTAGCTCAAAGAGCGCCCCTTCTAGGTGATAGGATAAAACAGAAGAGGACTCTTGTAGTTTTAGACGATGTTTGGGAAAAAATTGATCTGAGGGCTATCGGACTTCCACCTCTGGTGAACCTTAAAGTATTGTTGACATGTAGAAGTCGAAAGGAGTTATCATTGGATATGCGTACACAGAAAGATATTTCAGTTGATGTTTTAAATGAAGAGGAAGCATGGAGATTATTTGAGAAGATGGCTGGTGATGTTGTCAGAGACAGCCGGATAAAAAGCGTAGCATTTGAAGTAGCCAAAAAATGTGGAGGTTTGCCGGTCTTGATTGTTACGGTTGCAAGAGCTCTAAAAGACAGAAACAAGTTGCAAATATGGAAAGACACCTTGAGACGCCTTAGAGGCTTTGACAACAAAGAATTTACGGAAAAAGCATACTCGGCTCTGGAGTGGAGTTATGATCAATTGGAAGATAAAGAGCTTAAGCCGTTGTTCTTGCTTTGTGGGATTATTGTAGTGAAGAACCATATTAATTTGGCAGACTTGTTGAAATATGGTTTTGGTTTGGGTTTGATTAAAAATGTCGATACAATAGAAGAAGCACGAGATGCATTGGATGCACAAATTGAAAAGCTTAAAGATTCTTGCTTGTTGCTGGACGGTGATATCAATATGCATGCTAGAATGCATGATCTTGTATGTGAGGTTGCTACACGGATTGCATCCAGAGATCAACATGTCTTATCAGTTGGATATGGAGGTGAACTACAAGAAAGGCCTGATAAAGATTTCTTTGAAAGGTGCAGTAAGATGTCTTTAAAATCCAGCAATATTCCCATGCTTTCTGAAGTACCATGGAAATGCCCGAAACTAGAGATGTTTCATTTGTACAATAAAGATGGTGCATCATCGATGGAAATCCCAGCCAACTTTTTTAGTGAAATGGAGAAACTGAAAGTATTGGGTTTAACTGAAGTGCGTATGCGGTCACTACCCCCCATCTCTTCAGCTCTTGAAGAATCTTCAGACCTTGTGTTTAGAAGAATGTTGCTACCCGTAGAAATAGGGCAATTGATTCGATTGAGATGGTTGGATTTGAGTGATTGTGTCGGACTTCGAGTGATTTCACCTGGTGTTGTTTCAAGGTTGGAAAGACTAGAAGAGTTATCACTCAGAAACGTCTTTCTCAAATGGGAGGCTGAAAGGGGAGGAAGTAATGCTAGTCTTTTAGAGCTAAAAGACTTGTCTCAACTAACTGCATTGGAGATATATATTCGAGATGCAAATATTCTTCCATCAAACTTGTTCTCCAGTAAGTTGGTAAGATACCAAATATATATTGGCGATGTTTGGAAGAGCGGAGATTTTTGGAAGAAGACTACGGCTGAAACGACCCTCAACACGCTAAAACTGAAGCTCGCTCCCAGCGATGAATTGGACCGCGGTATCAAAACATTGTTGAAGAGATCTGAAGATTTGTCTTTGGATGGAACAGAGAGTGTTAATAGTATTGTCCGTCAATTAGATGTTGAAGATTTTCAGCAATTGATACACCTCCGTCTCGAAAACAATGTTGATTTCACCTATATCATTAATAGGAAGTTTGTGTTCCCCAACTTAACAACCTTGAGCATATGTAGCTGTGACCATCTAAGTTTCTTGTTCTCATTTTCTATGGCTAAAAGTTTGGTGGAGCTCAAACATCTTGAAGTATCCAGATGTGAAATAATGGAAGAGATAGTATCAGCAAGAGATCAATCCAATGGAGAAAATATCGATATCATGTTTTGTAAAATTTCCGAGCTTAGAGACACTGCAAATCAGTGTGCTAGGGAAGTTGCACACGCTATGGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

875

Amino Acids

100.04

Weight (kDa)

6.43

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 180 - 340 4e-26 NB-ARC domain
LRR_RPS2 PF23247 771 - 831 2.2e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 2127
AccII CGCG 1 cut(s) 2211
AciI CCGC 6 cut(s) 331, 416, 1753, 2127, 2209, 2211
AcsI RAATTY 4 cut(s) 314, 532, 1187, 2562
AcuI CTGAAG 6 cut(s) 1635, 1758, 1761, 1776, 2201, 2259
AcyI GRCGYC 3 cut(s) 5, 124, 1162
AdeI CACNNNGTG 1 cut(s) 1901
AfaI GTAC 5 cut(s) 104, 517, 949, 1620, 1658
AfiI CCNNNNNNNGG 2 cut(s) 183, 797
AflII CTTAAG 1 cut(s) 1250
AflIII ACRYGT 2 cut(s) 911, 1504
AhdI GACNNNNNGTC 1 cut(s) 348
AjnI CCWGG 1 cut(s) 1897
Alw21I GWGCWC 3 cut(s) 381, 1117, 2466
Alw26I GTCTC 5 cut(s) 1026, 1153, 2019, 2333, 2571
AoxI GGCC 3 cut(s) 26, 328, 1544
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 4 cut(s) 314, 532, 1187, 2562
AseI ATTAAT 3 cut(s) 191, 1299, 2361
Asp700I GAANNNNTTC 3 cut(s) 585, 636, 2304
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 1 cut(s) 2206
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 9 cut(s) 691, 697, 812, 901, 1031, 1442, 1541, 1887, 2341
AvaII GGWCC 1 cut(s) 2206
BaeI ACNNNNGTAYC 2 cut(s) 2197, 2230
BanII GRGCYC 2 cut(s) 1117, 2466
BauI CACGAG 1 cut(s) 1371
BbsI GAAGAC 3 cut(s) 344, 623, 2150
Bbv12I GWGCWC 3 cut(s) 381, 1117, 2466
BbvI GCAGC 1 cut(s) 156
BceAI ACGGC 2 cut(s) 1240, 2166
BcgI CGANNNNNNTGC 2 cut(s) 1826, 1860
BciT130I CCWGG 1 cut(s) 1899
BciVI GTATCC 1 cut(s) 2491
BclI TGATCA 2 cut(s) 226, 1228
BcnI CCSGG 1 cut(s) 505
BcoDI GTCTC 5 cut(s) 1026, 1153, 2019, 2333, 2571
BfaI CTAG 8 cut(s) 140, 776, 797, 1449, 1640, 1925, 1989, 2598
BfmI CTRYAG 2 cut(s) 57, 170
BfoI RGCGCY 1 cut(s) 791
BfrI CTTAAG 1 cut(s) 1250
BfuI GTATCC 1 cut(s) 2491
BglI GCCNNNNNGGC 1 cut(s) 1170
BglII AGATCT 1 cut(s) 2234
BisI GCNGC 2 cut(s) 170, 331
BlsI GCNGC 2 cut(s) 171, 332
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 505, 1899
Bme18I GGWCC 1 cut(s) 2206
BmeRI GACNNNNNGTC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 2206
BmrFI CCNGG 2 cut(s) 505, 1899
BmsI GCATC 6 cut(s) 280, 1366, 1375, 1499, 1682, 2038
BpiI GAAGAC 3 cut(s) 344, 623, 2150
BpmI CTGGAG 2 cut(s) 1235, 2062
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 1177, 2416
BpuMI CCSGG 1 cut(s) 505
Bsa29I ATCGAT 2 cut(s) 1679, 2544
BsaBI GATNNNNATC 1 cut(s) 1685
BsaHI GRCGYC 3 cut(s) 5, 124, 1162
BsaJI CCNNGG 3 cut(s) 334, 1622, 2209
BsaXI ACNNNNNCTCC 2 cut(s) 2060, 2090
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 797
Bse118I RCCGGY 1 cut(s) 1087
Bse1I ACTGG 2 cut(s) 278, 2079
Bse8I GATNNNNATC 1 cut(s) 1685
BseBI CCWGG 1 cut(s) 1899
BseCI ATCGAT 2 cut(s) 1679, 2544
BseDI CCNNGG 3 cut(s) 334, 1622, 2209
BseGI GGATG 6 cut(s) 295, 562, 661, 1390, 1490, 2260
BseJI GATNNNNATC 1 cut(s) 1685
BseLI CCNNNNNNNGG 2 cut(s) 183, 797
BseMII CTCAG 4 cut(s) 120, 554, 854, 1954
BseNI ACTGG 2 cut(s) 278, 2079
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 2 cut(s) 1690, 2192
BsgI GTGCAG 1 cut(s) 1591
Bsh1236I CGCG 1 cut(s) 2211
BshFI GGCC 3 cut(s) 28, 330, 1546
BshVI ATCGAT 2 cut(s) 1679, 2544
BsiHKAI GWGCWC 3 cut(s) 381, 1117, 2466
BsiSI CCGG 4 cut(s) 25, 504, 1039, 1088
BslI CCNNNNNNNGG 2 cut(s) 183, 797
BsmAI GTCTC 5 cut(s) 1026, 1153, 2019, 2333, 2571
BsmBI CGTCTC 2 cut(s) 1153, 2333
BsmI GAATGC 1 cut(s) 1458
BsnI GGCC 3 cut(s) 28, 330, 1546
Bsp1286I GDGCHC 3 cut(s) 381, 1117, 2466
Bsp1407I TGTACA 1 cut(s) 1656
Bsp143I GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
Bsp19I CCATGG 2 cut(s) 334, 1622
BspACI CCGC 6 cut(s) 331, 416, 1753, 2127, 2209, 2211
BspANI GGCC 3 cut(s) 28, 330, 1546
BspCNI CTCAG 4 cut(s) 119, 555, 855, 1953
BspDI ATCGAT 2 cut(s) 1679, 2544
BspFNI CGCG 1 cut(s) 2211
BspMAI CTGCAG 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 2117
BspTI CTTAAG 1 cut(s) 1250
BsrBI CCGCTC 1 cut(s) 2127
BsrFI RCCGGY 1 cut(s) 1087
BsrGI TGTACA 1 cut(s) 1656
BsrI ACTGG 2 cut(s) 278, 2079
BssAI RCCGGY 1 cut(s) 1087
BssECI CCNNGG 3 cut(s) 334, 1622, 2209
BssMI GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
BssNI GRCGYC 3 cut(s) 5, 124, 1162
BssSI CACGAG 1 cut(s) 1371
BssT1I CCWWGG 2 cut(s) 334, 1622
Bst2BI CACGAG 1 cut(s) 1371
Bst2UI CCWGG 1 cut(s) 1899
Bst4CI ACNGT 4 cut(s) 265, 515, 1105, 1430
Bst6I CTCTTC 7 cut(s) 812, 978, 1777, 1923, 2117, 2225, 2496
BstACI GRCGYC 3 cut(s) 5, 124, 1162
BstAFI CTTAAG 1 cut(s) 1250
BstAPI GCANNNNNTGC 2 cut(s) 1376, 1385
BstAUI TGTACA 1 cut(s) 1656
BstC8I GCNNGC 3 cut(s) 648, 1446, 2187
BstDSI CCRYGG 3 cut(s) 334, 1622, 2209
BstF5I GGATG 6 cut(s) 295, 562, 661, 1390, 1490, 2260
BstFNI CGCG 1 cut(s) 2211
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 8 cut(s) 229, 439, 862, 1231, 1462, 1501, 2237, 2524
BstMAI GTCTC 5 cut(s) 1026, 1153, 2019, 2333, 2571
BstMBI GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
BstMWI GCNNNNNNNGC 6 cut(s) 785, 1170, 1208, 1376, 1385, 2406
BstNI CCWGG 1 cut(s) 1899
BstNSI RCATGY 3 cut(s) 915, 1448, 1508
BstSCI CCNGG 2 cut(s) 503, 1897
BstSFI CTRYAG 2 cut(s) 57, 170
BstUI CGCG 1 cut(s) 2211
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 3 cut(s) 344, 623, 2150
BstX2I RGATCY 1 cut(s) 2234
BstXI CCANNNNNNTGG 2 cut(s) 745, 2086
BstYI RGATCY 1 cut(s) 2234
Bsu15I ATCGAT 2 cut(s) 1679, 2544
BsuI GTATCC 1 cut(s) 2491
BsuRI GGCC 3 cut(s) 28, 330, 1546
BsuTUI ATCGAT 2 cut(s) 1679, 2544
BtgI CCRYGG 3 cut(s) 334, 1622, 2209
BtgZI GCGATG 2 cut(s) 2127, 2211
BtsCI GGATG 6 cut(s) 295, 562, 661, 1390, 1490, 2260
BtsI GCAGTG 1 cut(s) 2580
BtsIMutI CAGTG 2 cut(s) 2580, 2597
Cac8I GCNNGC 3 cut(s) 648, 1446, 2187
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 1087
Cfr13I GGNCC 1 cut(s) 2206
Cfr42I CCGCGG 1 cut(s) 2212
ClaI ATCGAT 2 cut(s) 1679, 2544
CseI GACGC 2 cut(s) 132, 1170
CsiI ACCWGGT 1 cut(s) 1897
Csp6I GTAC 5 cut(s) 103, 516, 948, 1619, 1657
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviQI GTAC 5 cut(s) 103, 516, 948, 1619, 1657
DpnI GATC 8 cut(s) 228, 438, 861, 1230, 1461, 1500, 2236, 2523
DpnII GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
DraI TTTAAA 2 cut(s) 978, 1587
DraIII CACNNNGTG 1 cut(s) 1901
DriI GACNNNNNGTC 1 cut(s) 348
Eam1104I CTCTTC 7 cut(s) 812, 978, 1777, 1923, 2117, 2225, 2496
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 7 cut(s) 812, 978, 1777, 1923, 2117, 2225, 2496
EciI GGCGGA 1 cut(s) 431
Ecl136II GAGCTC 2 cut(s) 1115, 2464
Eco130I CCWWGG 2 cut(s) 334, 1622
Eco147I AGGCCT 1 cut(s) 1546
Eco24I GRGCYC 2 cut(s) 1117, 2466
Eco32I GATATC 2 cut(s) 1435, 2548
Eco47I GGWCC 1 cut(s) 2206
Eco53kI GAGCTC 2 cut(s) 1115, 2464
Eco57I CTGAAG 6 cut(s) 1635, 1758, 1761, 1776, 2201, 2259
EcoICRI GAGCTC 2 cut(s) 1115, 2464
EcoRI GAATTC 2 cut(s) 314, 532
EcoRII CCWGG 1 cut(s) 1897
EcoRV GATATC 2 cut(s) 1435, 2548
EcoT14I CCWWGG 2 cut(s) 334, 1622
EcoT22I ATGCAT 3 cut(s) 1381, 1446, 1458
EcoT38I GRGCYC 2 cut(s) 1117, 2466
ErhI CCWWGG 2 cut(s) 334, 1622
Esp3I CGTCTC 2 cut(s) 1153, 2333
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FauNDI CATATG 2 cut(s) 466, 2402
FbaI TGATCA 2 cut(s) 226, 1228
Fnu4HI GCNGC 2 cut(s) 170, 331
FokI GGATG 6 cut(s) 302, 569, 668, 1397, 1477, 2267
FriOI GRGCYC 2 cut(s) 1117, 2466
Fsp4HI GCNGC 2 cut(s) 170, 331
FspBI CTAG 8 cut(s) 140, 776, 797, 1449, 1640, 1925, 1989, 2598
GlaI GCGC 1 cut(s) 789
GluI GCNGC 2 cut(s) 170, 331
GsaI CCCAGC 2 cut(s) 1694, 2196
GsuI CTGGAG 2 cut(s) 1235, 2062
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 3 cut(s) 28, 330, 1546
HapII CCGG 4 cut(s) 25, 504, 1039, 1088
HgaI GACGC 2 cut(s) 132, 1170
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 3 cut(s) 5, 124, 1162
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 1400
HinfI GANTC 9 cut(s) 252, 524, 549, 586, 600, 823, 1409, 1787, 1843
HpaII CCGG 4 cut(s) 25, 504, 1039, 1088
HphI GGTGA 9 cut(s) 691, 697, 812, 901, 1031, 1442, 1541, 1887, 2341
Hpy166II GTNNAC 4 cut(s) 892, 909, 950, 1532
Hpy8I GTNNAC 4 cut(s) 892, 909, 950, 1532
HpyAV CCTTC 3 cut(s) 236, 320, 803
HpyCH4III ACNGT 4 cut(s) 265, 515, 1105, 1430
HpyCH4IV ACGT 2 cut(s) 5, 1947
HpyF10VI GCNNNNNNNGC 6 cut(s) 785, 1170, 1208, 1376, 1385, 2406
HpySE526I ACGT 2 cut(s) 5, 1947
Hsp92I GRCGYC 3 cut(s) 5, 124, 1162
HspAI GCGC 1 cut(s) 788
Ksp22I TGATCA 2 cut(s) 226, 1228
KspI CCGCGG 1 cut(s) 2212
Kzo9I GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
LguI GCTCTTC 1 cut(s) 2117
LmnI GCTCC 3 cut(s) 384, 2194, 2461
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 6 cut(s) 280, 1366, 1375, 1499, 1682, 2038
MabI ACCWGGT 1 cut(s) 1897
MaeI CTAG 8 cut(s) 140, 776, 797, 1449, 1640, 1925, 1989, 2598
MaeII ACGT 2 cut(s) 5, 1947
MaeIII GTNAC 3 cut(s) 1099, 1755, 2411
MalI GATC 8 cut(s) 228, 438, 861, 1230, 1461, 1500, 2236, 2523
MbiI CCGCTC 1 cut(s) 2127
MboI GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
MfeI CAATTG 6 cut(s) 81, 117, 537, 1232, 1838, 2312
MflI RGATCY 1 cut(s) 2234
MhlI GDGCHC 3 cut(s) 381, 1117, 2466
MlyI GAGTC 2 cut(s) 558, 817
MmeI TCCRAC 5 cut(s) 480, 1498, 1839, 1858, 1896
Mph1103I ATGCAT 3 cut(s) 1381, 1446, 1458
MroXI GAANNNNTTC 3 cut(s) 585, 636, 2304
MslI CAYNNNNRTG 1 cut(s) 1627
MspA1I CMGCKG 1 cut(s) 2211
MspCI CTTAAG 1 cut(s) 1250
MspI CCGG 4 cut(s) 25, 504, 1039, 1088
MspR9I CCNGG 2 cut(s) 505, 1899
MunI CAATTG 6 cut(s) 81, 117, 537, 1232, 1838, 2312
Mva1269I GAATGC 1 cut(s) 1458
MvaI CCWGG 1 cut(s) 1899
MvnI CGCG 1 cut(s) 2211
MwoI GCNNNNNNNGC 6 cut(s) 785, 1170, 1208, 1376, 1385, 2406
NciI CCSGG 1 cut(s) 505
NcoI CCATGG 2 cut(s) 334, 1622
NdeI CATATG 2 cut(s) 466, 2402
NdeII GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
NmeAIII GCCGAG 2 cut(s) 124, 1187
NmuCI GTSAC 2 cut(s) 1755, 2411
NsiI ATGCAT 3 cut(s) 1381, 1446, 1458
NspI RCATGY 3 cut(s) 915, 1448, 1508
PaeI GCATGC 1 cut(s) 1448
PceI AGGCCT 1 cut(s) 1546
PciI ACATGT 2 cut(s) 911, 1504
PciSI GCTCTTC 1 cut(s) 2117
PcsI WCGNNNNNNNCGW 2 cut(s) 2156, 2193
PctI GAATGC 1 cut(s) 1458
PdmI GAANNNNTTC 3 cut(s) 585, 636, 2304
PfeI GAWTC 7 cut(s) 252, 524, 586, 600, 1409, 1787, 1843
PkrI GCNGC 2 cut(s) 171, 332
PleI GAGTC 2 cut(s) 557, 817
PpsI GAGTC 2 cut(s) 557, 817
PscI ACATGT 2 cut(s) 911, 1504
PshBI ATTAAT 3 cut(s) 191, 1299, 2361
Psp124BI GAGCTC 2 cut(s) 1117, 2466
Psp6I CCWGG 1 cut(s) 1897
PspFI CCCAGC 2 cut(s) 1690, 2192
PspGI CCWGG 1 cut(s) 1897
PspPI GGNCC 1 cut(s) 2206
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 2234
RsaI GTAC 5 cut(s) 104, 517, 949, 1620, 1658
RsaNI GTAC 5 cut(s) 103, 516, 948, 1619, 1657
RseI CAYNNNNRTG 1 cut(s) 1627
SacI GAGCTC 2 cut(s) 1117, 2466
SacII CCGCGG 1 cut(s) 2212
SapI GCTCTTC 1 cut(s) 2117
SatI GCNGC 2 cut(s) 170, 331
Sau3AI GATC 8 cut(s) 226, 436, 859, 1228, 1459, 1498, 2234, 2521
Sau96I GGNCC 1 cut(s) 2206
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 2 cut(s) 558, 817
ScrFI CCNGG 2 cut(s) 505, 1899
SduI GDGCHC 3 cut(s) 381, 1117, 2466
SexAI ACCWGGT 1 cut(s) 1897
SfaNI GCATC 6 cut(s) 280, 1366, 1375, 1499, 1682, 2038
SfcI CTRYAG 2 cut(s) 57, 170
Sfr303I CCGCGG 1 cut(s) 2212
SgrBI CCGCGG 1 cut(s) 2212
SinI GGWCC 1 cut(s) 2206
SmiMI CAYNNNNRTG 1 cut(s) 1627
SmlI CTYRAG 3 cut(s) 1156, 1250, 2395
SmoI CTYRAG 3 cut(s) 1156, 1250, 2395
SphI GCATGC 1 cut(s) 1448
SseBI AGGCCT 1 cut(s) 1546
SsiI CCGC 6 cut(s) 331, 416, 1753, 2127, 2209, 2211
SspI AATATT 2 cut(s) 1600, 2056
SspMI CTAG 8 cut(s) 140, 776, 797, 1449, 1640, 1925, 1989, 2598
SstI GAGCTC 2 cut(s) 1117, 2466
StuI AGGCCT 1 cut(s) 1546
StyD4I CCNGG 2 cut(s) 503, 1897
StyI CCWWGG 2 cut(s) 334, 1622
TaaI ACNGT 4 cut(s) 265, 515, 1105, 1430
TaiI ACGT 2 cut(s) 8, 1950
TaqII GACCGA 1 cut(s) 359
TatI WGTACW 3 cut(s) 102, 515, 1656
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 7 cut(s) 252, 524, 586, 600, 1409, 1787, 1843
TscAI CASTG 2 cut(s) 2587, 2597
TseFI GTSAC 2 cut(s) 1755, 2411
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 2 cut(s) 1755, 2411
TspDTI ATGAA 9 cut(s) 177, 344, 444, 486, 573, 755, 996, 1640, 2214
TspGWI ACGGA 5 cut(s) 371, 1208, 1498, 2273, 2315
TspRI CASTG 2 cut(s) 2587, 2597
Vha464I CTTAAG 1 cut(s) 1250
VpaK11BI GGWCC 1 cut(s) 2206
VspI ATTAAT 3 cut(s) 191, 1299, 2361
XapI RAATTY 4 cut(s) 314, 532, 1187, 2562
XceI RCATGY 3 cut(s) 915, 1448, 1508
XcmI CCANNNNNNNNNTGG 2 cut(s) 2105, 2200
XmnI GAANNNNTTC 3 cut(s) 585, 636, 2304
XspI CTAG 8 cut(s) 140, 776, 797, 1449, 1640, 1925, 1989, 2598
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 104
Zsp2I ATGCAT 3 cut(s) 1381, 1446, 1458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.