Protein transport protein sec16
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_15 | PF13175 | 1 - 300 | 4.7e-12 | AAA ATPase domain |
| SMC_N | PF02463 | 2 - 1177 | 5.7e-68 | RecF/RecN/SMC N terminal domain |
| AAA_23 | PF13476 | 6 - 310 | 4.1e-10 | AAA domain |
| AAA_21 | PF13304 | 27 - 56 | 5.6e-06 | AAA domain, putative AbiEii toxin, Type IV TA system |
| Myosin_tail_1 | PF01576 | 271 - 495 | 5.3e-08 | Myosin tail |
| SMC_hinge | PF06470 | 522 - 634 | 4.3e-28 | SMC proteins Flexible Hinge Domain |
| AAA_21 | PF13304 | 1065 - 1157 | 2.6e-06 | AAA domain, putative AbiEii toxin, Type IV TA system |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 20, 3461 |
| AarI | CACCTGC | 1 cut(s) | 2987 |
| AatII | GACGTC | 1 cut(s) | 517 |
| Acc36I | ACCTGC | 1 cut(s) | 2987 |
| AccB1I | GGYRCC | 3 cut(s) | 210, 1698, 2315 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 715 |
| AccBSI | CCGCTC | 1 cut(s) | 1288 |
| AccIII | TCCGGA | 1 cut(s) | 107 |
| AciI | CCGC | 5 cut(s) | 289, 1288, 2260, 2417, 2485 |
| AclI | AACGTT | 1 cut(s) | 3546 |
| AclWI | GGATC | 6 cut(s) | 2361, 2427, 3341, 3386, 3399, 3418 |
| AcoI | YGGCCR | 3 cut(s) | 1887, 2292, 3121 |
| AcsI | RAATTY | 4 cut(s) | 367, 1225, 1528, 2944 |
| AcuI | CTGAAG | 4 cut(s) | 680, 1232, 2454, 2699 |
| AcvI | CACGTG | 1 cut(s) | 1355 |
| AcyI | GRCGYC | 2 cut(s) | 514, 3430 |
| AfaI | GTAC | 6 cut(s) | 144, 584, 1294, 1829, 2786, 3401 |
| AfeI | AGCGCT | 1 cut(s) | 3387 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 715, 1419, 1746, 1747, 3139, 3433 |
| AflII | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| AgeI | ACCGGT | 1 cut(s) | 268 |
| AjnI | CCWGG | 4 cut(s) | 1504, 1564, 3196, 3432 |
| AleI | CACNNNNGTG | 1 cut(s) | 497 |
| Alw26I | GTCTC | 3 cut(s) | 505, 2423, 3260 |
| AlwI | GGATC | 6 cut(s) | 2361, 2427, 3341, 3386, 3399, 3418 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 997, 2566, 2746 |
| Ama87I | CYCGRG | 1 cut(s) | 495 |
| Aor13HI | TCCGGA | 1 cut(s) | 107 |
| Aor51HI | AGCGCT | 1 cut(s) | 3387 |
| AoxI | GGCC | 3 cut(s) | 1887, 2292, 3121 |
| ApoI | RAATTY | 4 cut(s) | 367, 1225, 1528, 2944 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 292, 324, 1123, 1155 |
| AsiGI | ACCGGT | 1 cut(s) | 268 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1212, 2617 |
| AspLEI | GCGC | 2 cut(s) | 1407, 3388 |
| AspS9I | GGNCC | 3 cut(s) | 105, 1577, 3194 |
| AsuC2I | CCSGG | 1 cut(s) | 3256 |
| AsuHPI | GGTGA | 7 cut(s) | 1520, 1762, 2552, 3011, 3122, 3154, 3544 |
| AsuII | TTCGAA | 1 cut(s) | 169 |
| AvaI | CYCGRG | 1 cut(s) | 495 |
| AvaII | GGWCC | 3 cut(s) | 105, 1577, 3194 |
| BaeGI | GKGCMC | 2 cut(s) | 213, 2318 |
| BalI | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| BamHI | GGATCC | 1 cut(s) | 3391 |
| BanI | GGYRCC | 3 cut(s) | 210, 1698, 2315 |
| BanII | GRGCYC | 1 cut(s) | 1759 |
| BauI | CACGAG | 1 cut(s) | 1170 |
| BbrPI | CACGTG | 1 cut(s) | 1355 |
| BbsI | GAAGAC | 2 cut(s) | 235, 2700 |
| BccI | CCATC | 5 cut(s) | 329, 1904, 2627, 3149, 3185 |
| BceAI | ACGGC | 1 cut(s) | 3522 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 167, 201, 2802, 2836 |
| BciT130I | CCWGG | 4 cut(s) | 1506, 1566, 3198, 3434 |
| BclI | TGATCA | 5 cut(s) | 1492, 1981, 2272, 2329, 3580 |
| BcnI | CCSGG | 1 cut(s) | 3256 |
| BcoDI | GTCTC | 3 cut(s) | 505, 2423, 3260 |
| BfaI | CTAG | 6 cut(s) | 1857, 1916, 2286, 2498, 2577, 3081 |
| BfmI | CTRYAG | 5 cut(s) | 40, 935, 989, 998, 1546 |
| BfoI | RGCGCY | 1 cut(s) | 3389 |
| BfrI | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| BfuAI | ACCTGC | 1 cut(s) | 2987 |
| BglII | AGATCT | 6 cut(s) | 826, 931, 1542, 1876, 2386, 3212 |
| BlpI | GCTNAGC | 2 cut(s) | 1115, 2139 |
| BmcAI | AGTACT | 2 cut(s) | 584, 2786 |
| Bme1390I | CCNGG | 5 cut(s) | 1506, 1566, 3198, 3256, 3434 |
| Bme18I | GGWCC | 3 cut(s) | 105, 1577, 3194 |
| BmeT110I | CYCGRG | 1 cut(s) | 495 |
| BmgT120I | GGNCC | 3 cut(s) | 105, 1577, 3194 |
| BmiI | GGNNCC | 7 cut(s) | 106, 212, 1700, 1758, 1794, 2317, 3393 |
| BmrFI | CCNGG | 5 cut(s) | 1506, 1566, 3198, 3256, 3434 |
| BmrI | ACTGGG | 1 cut(s) | 1144 |
| BmuI | ACTGGG | 1 cut(s) | 1144 |
| BpiI | GAAGAC | 2 cut(s) | 235, 2700 |
| BpmI | CTGGAG | 3 cut(s) | 2325, 2756, 2954 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1845 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1115, 2139 |
| Bpu14I | TTCGAA | 1 cut(s) | 169 |
| BpuEI | CTTGAG | 4 cut(s) | 935, 1052, 2081, 2347 |
| BpuMI | CCSGG | 1 cut(s) | 3256 |
| BsaAI | YACGTR | 1 cut(s) | 1355 |
| BsaHI | GRCGYC | 2 cut(s) | 514, 3430 |
| BsaJI | CCNNGG | 6 cut(s) | 801, 1565, 1760, 2661, 3124, 3197 |
| BsaWI | WCCGGW | 2 cut(s) | 107, 268 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1929, 1959 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 715, 1419, 1746, 1747, 3139, 3433 |
| Bse118I | RCCGGY | 1 cut(s) | 268 |
| Bse1I | ACTGG | 9 cut(s) | 378, 471, 550, 612, 1150, 2169, 2935, 2994, 3589 |
| Bse3DI | GCAATG | 3 cut(s) | 2184, 2893, 3347 |
| BseAI | TCCGGA | 1 cut(s) | 107 |
| BseBI | CCWGG | 4 cut(s) | 1506, 1566, 3198, 3434 |
| BseDI | CCNNGG | 6 cut(s) | 801, 1565, 1760, 2661, 3124, 3197 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 715, 1419, 1746, 1747, 3139, 3433 |
| BseMI | GCAATG | 3 cut(s) | 2184, 2893, 3347 |
| BseNI | ACTGG | 9 cut(s) | 378, 471, 550, 612, 1150, 2169, 2935, 2994, 3589 |
| BseRI | GAGGAG | 3 cut(s) | 521, 1531, 2360 |
| BseSI | GKGCMC | 2 cut(s) | 213, 2318 |
| BseYI | CCCAGC | 2 cut(s) | 383, 1637 |
| BsgI | GTGCAG | 3 cut(s) | 225, 437, 2861 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BshFI | GGCC | 3 cut(s) | 1889, 2294, 3123 |
| BshNI | GGYRCC | 3 cut(s) | 210, 1698, 2315 |
| BshTI | ACCGGT | 1 cut(s) | 268 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsiHKCI | CYCGRG | 1 cut(s) | 495 |
| BsiSI | CCGG | 3 cut(s) | 108, 269, 3255 |
| BslFI | GGGAC | 1 cut(s) | 1400 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 715, 1419, 1746, 1747, 3139, 3433 |
| BsmAI | GTCTC | 3 cut(s) | 505, 2423, 3260 |
| BsmBI | CGTCTC | 1 cut(s) | 505 |
| BsmFI | GGGAC | 1 cut(s) | 1400 |
| BsmI | GAATGC | 1 cut(s) | 2197 |
| BsnI | GGCC | 3 cut(s) | 1889, 2294, 3123 |
| BsoBI | CYCGRG | 1 cut(s) | 495 |
| Bsp119I | TTCGAA | 1 cut(s) | 169 |
| Bsp1286I | GDGCHC | 3 cut(s) | 213, 1759, 2318 |
| Bsp13I | TCCGGA | 1 cut(s) | 107 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1115, 2139 |
| Bsp19I | CCATGG | 1 cut(s) | 3124 |
| BspACI | CCGC | 5 cut(s) | 289, 1288, 2260, 2417, 2485 |
| BspANI | GGCC | 3 cut(s) | 1889, 2294, 3123 |
| BspEI | TCCGGA | 1 cut(s) | 107 |
| BspHI | TCATGA | 1 cut(s) | 1065 |
| BspLI | GGNNCC | 7 cut(s) | 106, 212, 1700, 1758, 1794, 2317, 3393 |
| BspMAI | CTGCAG | 2 cut(s) | 1002, 1550 |
| BspMI | ACCTGC | 1 cut(s) | 2987 |
| BspPI | GGATC | 6 cut(s) | 2361, 2427, 3341, 3386, 3399, 3418 |
| BspQI | GCTCTTC | 1 cut(s) | 1478 |
| BspT104I | TTCGAA | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 3 cut(s) | 210, 1698, 2315 |
| BspTI | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| BsrBI | CCGCTC | 1 cut(s) | 1288 |
| BsrDI | GCAATG | 3 cut(s) | 2184, 2893, 3347 |
| BsrFI | RCCGGY | 1 cut(s) | 268 |
| BsrI | ACTGG | 9 cut(s) | 378, 471, 550, 612, 1150, 2169, 2935, 2994, 3589 |
| BssAI | RCCGGY | 1 cut(s) | 268 |
| BssECI | CCNNGG | 6 cut(s) | 801, 1565, 1760, 2661, 3124, 3197 |
| BssNI | GRCGYC | 2 cut(s) | 514, 3430 |
| BssSI | CACGAG | 1 cut(s) | 1170 |
| BssT1I | CCWWGG | 4 cut(s) | 801, 1760, 2661, 3124 |
| Bst2BI | CACGAG | 1 cut(s) | 1170 |
| Bst2UI | CCWGG | 4 cut(s) | 1506, 1566, 3198, 3434 |
| Bst4CI | ACNGT | 3 cut(s) | 1864, 2904, 3307 |
| Bst6I | CTCTTC | 5 cut(s) | 609, 1478, 1799, 2608, 2775 |
| BstACI | GRCGYC | 2 cut(s) | 514, 3430 |
| BstAFI | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| BstBAI | YACGTR | 1 cut(s) | 1355 |
| BstBI | TTCGAA | 1 cut(s) | 169 |
| BstC8I | GCNNGC | 6 cut(s) | 186, 706, 717, 2304, 2410, 2982 |
| BstDSI | CCRYGG | 1 cut(s) | 3124 |
| BstEII | GGTNACC | 2 cut(s) | 3128, 3158 |
| BstH2I | RGCGCY | 1 cut(s) | 3389 |
| BstHHI | GCGC | 2 cut(s) | 1407, 3388 |
| BstMAI | GTCTC | 3 cut(s) | 505, 2423, 3260 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 10, 652, 1108, 1402, 1841, 2291, 2414, 2444, 2740 |
| BstNI | CCWGG | 4 cut(s) | 1506, 1566, 3198, 3434 |
| BstNSI | RCATGY | 3 cut(s) | 188, 2306, 2412 |
| BstPI | GGTNACC | 2 cut(s) | 3128, 3158 |
| BstSCI | CCNGG | 5 cut(s) | 1504, 1564, 3196, 3254, 3432 |
| BstSFI | CTRYAG | 5 cut(s) | 40, 935, 989, 998, 1546 |
| BstSLI | GKGCMC | 2 cut(s) | 213, 2318 |
| BstV2I | GAAGAC | 2 cut(s) | 235, 2700 |
| BstX2I | RGATCY | 8 cut(s) | 826, 931, 1542, 1876, 2353, 2386, 3212, 3391 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 808, 2734 |
| BstYI | RGATCY | 8 cut(s) | 826, 931, 1542, 1876, 2353, 2386, 3212, 3391 |
| BsuRI | GGCC | 3 cut(s) | 1889, 2294, 3123 |
| BtgI | CCRYGG | 1 cut(s) | 3124 |
| BtgZI | GCGATG | 1 cut(s) | 1923 |
| BtsI | GCAGTG | 3 cut(s) | 876, 1629, 1830 |
| BtsIMutI | CAGTG | 6 cut(s) | 443, 543, 876, 1629, 1709, 1830 |
| BveI | ACCTGC | 1 cut(s) | 2987 |
| Cac8I | GCNNGC | 6 cut(s) | 186, 706, 717, 2304, 2410, 2982 |
| CaiI | CAGNNNCTG | 3 cut(s) | 997, 2566, 2746 |
| CciI | TCATGA | 1 cut(s) | 1065 |
| CfoI | GCGC | 2 cut(s) | 1407, 3388 |
| Cfr10I | RCCGGY | 1 cut(s) | 268 |
| Cfr13I | GGNCC | 3 cut(s) | 105, 1577, 3194 |
| CseI | GACGC | 3 cut(s) | 1998, 3328, 3438 |
| Csp6I | GTAC | 6 cut(s) | 143, 583, 1293, 1828, 2785, 3400 |
| CspAI | ACCGGT | 1 cut(s) | 268 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1879, 1914, 1939, 1974 |
| CviQI | GTAC | 6 cut(s) | 143, 583, 1293, 1828, 2785, 3400 |
| DraI | TTTAAA | 2 cut(s) | 852, 3070 |
| EaeI | YGGCCR | 3 cut(s) | 1887, 2292, 3121 |
| Eam1104I | CTCTTC | 5 cut(s) | 609, 1478, 1799, 2608, 2775 |
| EarI | CTCTTC | 5 cut(s) | 609, 1478, 1799, 2608, 2775 |
| EciI | GGCGGA | 2 cut(s) | 2432, 2500 |
| Eco130I | CCWWGG | 4 cut(s) | 801, 1760, 2661, 3124 |
| Eco24I | GRGCYC | 1 cut(s) | 1759 |
| Eco32I | GATATC | 1 cut(s) | 948 |
| Eco47I | GGWCC | 3 cut(s) | 105, 1577, 3194 |
| Eco47III | AGCGCT | 1 cut(s) | 3387 |
| Eco57I | CTGAAG | 4 cut(s) | 680, 1232, 2454, 2699 |
| Eco72I | CACGTG | 1 cut(s) | 1355 |
| Eco88I | CYCGRG | 1 cut(s) | 495 |
| Eco91I | GGTNACC | 2 cut(s) | 3128, 3158 |
| EcoO65I | GGTNACC | 2 cut(s) | 3128, 3158 |
| EcoRII | CCWGG | 4 cut(s) | 1504, 1564, 3196, 3432 |
| EcoRV | GATATC | 1 cut(s) | 948 |
| EcoT14I | CCWWGG | 4 cut(s) | 801, 1760, 2661, 3124 |
| EcoT38I | GRGCYC | 1 cut(s) | 1759 |
| ErhI | CCWWGG | 4 cut(s) | 801, 1760, 2661, 3124 |
| Esp3I | CGTCTC | 1 cut(s) | 505 |
| FaqI | GGGAC | 1 cut(s) | 1400 |
| FauI | CCCGC | 2 cut(s) | 1281, 2253 |
| FbaI | TGATCA | 5 cut(s) | 1492, 1981, 2272, 2329, 3580 |
| FriOI | GRGCYC | 1 cut(s) | 1759 |
| FspBI | CTAG | 6 cut(s) | 1857, 1916, 2286, 2498, 2577, 3081 |
| GlaI | GCGC | 2 cut(s) | 1406, 3387 |
| GsaI | CCCAGC | 2 cut(s) | 387, 1641 |
| GsuI | CTGGAG | 3 cut(s) | 2325, 2756, 2954 |
| HaeII | RGCGCY | 1 cut(s) | 3389 |
| HaeIII | GGCC | 3 cut(s) | 1889, 2294, 3123 |
| HapII | CCGG | 3 cut(s) | 108, 269, 3255 |
| HgaI | GACGC | 3 cut(s) | 1998, 3328, 3438 |
| HhaI | GCGC | 2 cut(s) | 1407, 3388 |
| Hin1I | GRCGYC | 2 cut(s) | 514, 3430 |
| Hin6I | GCGC | 2 cut(s) | 1405, 3386 |
| HinP1I | GCGC | 2 cut(s) | 1405, 3386 |
| HincII | GTYRAC | 2 cut(s) | 2917, 3544 |
| HindII | GTYRAC | 2 cut(s) | 2917, 3544 |
| HindIII | AAGCTT | 3 cut(s) | 846, 1244, 2399 |
| HpaII | CCGG | 3 cut(s) | 108, 269, 3255 |
| HphI | GGTGA | 7 cut(s) | 1520, 1762, 2552, 3011, 3122, 3154, 3544 |
| Hpy166II | GTNNAC | 3 cut(s) | 1830, 2917, 3544 |
| Hpy8I | GTNNAC | 3 cut(s) | 1830, 2917, 3544 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 763, 3432 |
| HpyCH4III | ACNGT | 3 cut(s) | 1864, 2904, 3307 |
| HpyCH4IV | ACGT | 6 cut(s) | 514, 1264, 1354, 2837, 2959, 3546 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 10, 652, 1108, 1402, 1841, 2291, 2414, 2444, 2740 |
| HpySE526I | ACGT | 6 cut(s) | 514, 1264, 1354, 2837, 2959, 3546 |
| Hsp92I | GRCGYC | 2 cut(s) | 514, 3430 |
| HspAI | GCGC | 2 cut(s) | 1405, 3386 |
| Kpn2I | TCCGGA | 1 cut(s) | 107 |
| Ksp22I | TGATCA | 5 cut(s) | 1492, 1981, 2272, 2329, 3580 |
| LguI | GCTCTTC | 1 cut(s) | 1478 |
| LmnI | GCTCC | 5 cut(s) | 401, 1099, 1762, 2737, 3358 |
| MaeI | CTAG | 6 cut(s) | 1857, 1916, 2286, 2498, 2577, 3081 |
| MaeII | ACGT | 6 cut(s) | 514, 1264, 1354, 2837, 2959, 3546 |
| MbiI | CCGCTC | 1 cut(s) | 1288 |
| MfeI | CAATTG | 3 cut(s) | 82, 303, 2648 |
| MflI | RGATCY | 8 cut(s) | 826, 931, 1542, 1876, 2353, 2386, 3212, 3391 |
| MhlI | GDGCHC | 3 cut(s) | 213, 1759, 2318 |
| MlsI | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| MluNI | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| MlyI | GAGTC | 3 cut(s) | 1003, 2332, 3262 |
| MmeI | TCCRAC | 4 cut(s) | 2044, 3394, 3451, 3499 |
| Mox20I | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| MroI | TCCGGA | 1 cut(s) | 107 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1212, 2617 |
| MscI | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| MslI | CAYNNNNRTG | 2 cut(s) | 201, 497 |
| Msp20I | TGGCCA | 3 cut(s) | 1889, 2294, 3123 |
| MspA1I | CMGCKG | 1 cut(s) | 2734 |
| MspCI | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| MspI | CCGG | 3 cut(s) | 108, 269, 3255 |
| MspR9I | CCNGG | 5 cut(s) | 1506, 1566, 3198, 3256, 3434 |
| MunI | CAATTG | 3 cut(s) | 82, 303, 2648 |
| Mva1269I | GAATGC | 1 cut(s) | 2197 |
| MvaI | CCWGG | 4 cut(s) | 1506, 1566, 3198, 3434 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 10, 652, 1108, 1402, 1841, 2291, 2414, 2444, 2740 |
| NciI | CCSGG | 1 cut(s) | 3256 |
| NcoI | CCATGG | 1 cut(s) | 3124 |
| NlaIV | GGNNCC | 7 cut(s) | 106, 212, 1700, 1758, 1794, 2317, 3393 |
| NmuCI | GTSAC | 5 cut(s) | 149, 1172, 1350, 3128, 3591 |
| NspI | RCATGY | 3 cut(s) | 188, 2306, 2412 |
| NspV | TTCGAA | 1 cut(s) | 169 |
| OliI | CACNNNNGTG | 1 cut(s) | 497 |
| PaeI | GCATGC | 3 cut(s) | 188, 2306, 2412 |
| PaeR7I | CTCGAG | 1 cut(s) | 495 |
| PagI | TCATGA | 1 cut(s) | 1065 |
| PaqCI | CACCTGC | 1 cut(s) | 2987 |
| PciSI | GCTCTTC | 1 cut(s) | 1478 |
| PctI | GAATGC | 1 cut(s) | 2197 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1212, 2617 |
| PfeI | GAWTC | 9 cut(s) | 455, 1009, 1016, 1057, 1304, 1334, 2011, 2557, 3050 |
| PflFI | GACNNNGTC | 1 cut(s) | 3271 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 715 |
| PinAI | ACCGGT | 1 cut(s) | 268 |
| Ple19I | CGATCG | 1 cut(s) | 181 |
| PleI | GAGTC | 3 cut(s) | 1002, 2332, 3262 |
| PmaCI | CACGTG | 1 cut(s) | 1355 |
| PmlI | CACGTG | 1 cut(s) | 1355 |
| PpsI | GAGTC | 3 cut(s) | 1002, 2332, 3262 |
| Ppu21I | YACGTR | 1 cut(s) | 1355 |
| PsiI | TTATAA | 2 cut(s) | 20, 3461 |
| Psp1406I | AACGTT | 1 cut(s) | 3546 |
| Psp6I | CCWGG | 4 cut(s) | 1504, 1564, 3196, 3432 |
| PspCI | CACGTG | 1 cut(s) | 1355 |
| PspEI | GGTNACC | 2 cut(s) | 3128, 3158 |
| PspFI | CCCAGC | 2 cut(s) | 383, 1637 |
| PspGI | CCWGG | 4 cut(s) | 1504, 1564, 3196, 3432 |
| PspN4I | GGNNCC | 7 cut(s) | 106, 212, 1700, 1758, 1794, 2317, 3393 |
| PspPI | GGNCC | 3 cut(s) | 105, 1577, 3194 |
| PspXI | VCTCGAGB | 1 cut(s) | 495 |
| PstI | CTGCAG | 2 cut(s) | 1002, 1550 |
| PstNI | CAGNNNCTG | 3 cut(s) | 997, 2566, 2746 |
| PsuI | RGATCY | 8 cut(s) | 826, 931, 1542, 1876, 2353, 2386, 3212, 3391 |
| PsyI | GACNNNGTC | 1 cut(s) | 3271 |
| PvuI | CGATCG | 1 cut(s) | 181 |
| PvuII | CAGCTG | 1 cut(s) | 2734 |
| RsaI | GTAC | 6 cut(s) | 144, 584, 1294, 1829, 2786, 3401 |
| RsaNI | GTAC | 6 cut(s) | 143, 583, 1293, 1828, 2785, 3400 |
| RseI | CAYNNNNRTG | 2 cut(s) | 201, 497 |
| SapI | GCTCTTC | 1 cut(s) | 1478 |
| Sau96I | GGNCC | 3 cut(s) | 105, 1577, 3194 |
| ScaI | AGTACT | 2 cut(s) | 584, 2786 |
| SchI | GAGTC | 3 cut(s) | 1003, 2332, 3262 |
| ScrFI | CCNGG | 5 cut(s) | 1506, 1566, 3198, 3256, 3434 |
| SduI | GDGCHC | 3 cut(s) | 213, 1759, 2318 |
| SfcI | CTRYAG | 5 cut(s) | 40, 935, 989, 998, 1546 |
| Sfr274I | CTCGAG | 1 cut(s) | 495 |
| SfuI | TTCGAA | 1 cut(s) | 169 |
| SinI | GGWCC | 3 cut(s) | 105, 1577, 3194 |
| SlaI | CTCGAG | 1 cut(s) | 495 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 201, 497 |
| SmlI | CTYRAG | 8 cut(s) | 476, 495, 914, 1031, 2060, 2174, 2362, 2477 |
| SmoI | CTYRAG | 8 cut(s) | 476, 495, 914, 1031, 2060, 2174, 2362, 2477 |
| SphI | GCATGC | 3 cut(s) | 188, 2306, 2412 |
| SsiI | CCGC | 5 cut(s) | 289, 1288, 2260, 2417, 2485 |
| SspI | AATATT | 1 cut(s) | 1561 |
| SspMI | CTAG | 6 cut(s) | 1857, 1916, 2286, 2498, 2577, 3081 |
| StyD4I | CCNGG | 5 cut(s) | 1504, 1564, 3196, 3254, 3432 |
| StyI | CCWWGG | 4 cut(s) | 801, 1760, 2661, 3124 |
| TaaI | ACNGT | 3 cut(s) | 1864, 2904, 3307 |
| TaiI | ACGT | 6 cut(s) | 517, 1267, 1357, 2840, 2962, 3549 |
| TatI | WGTACW | 5 cut(s) | 142, 582, 1827, 2784, 3399 |
| TfiI | GAWTC | 9 cut(s) | 455, 1009, 1016, 1057, 1304, 1334, 2011, 2557, 3050 |
| TscAI | CASTG | 6 cut(s) | 450, 550, 876, 1629, 1716, 1837 |
| TseFI | GTSAC | 5 cut(s) | 149, 1172, 1350, 3128, 3591 |
| Tsp45I | GTSAC | 5 cut(s) | 149, 1172, 1350, 3128, 3591 |
| TspRI | CASTG | 6 cut(s) | 450, 550, 876, 1629, 1716, 1837 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3271 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 715 |
| Vha464I | CTTAAG | 3 cut(s) | 476, 2174, 2477 |
| VpaK11BI | GGWCC | 3 cut(s) | 105, 1577, 3194 |
| XapI | RAATTY | 4 cut(s) | 367, 1225, 1528, 2944 |
| XbaI | TCTAGA | 1 cut(s) | 1915 |
| XceI | RCATGY | 3 cut(s) | 188, 2306, 2412 |
| XhoI | CTCGAG | 1 cut(s) | 495 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1212, 2617 |
| XspI | CTAG | 6 cut(s) | 1857, 1916, 2286, 2498, 2577, 3081 |
| ZraI | GACGTC | 1 cut(s) | 515 |
| ZrmI | AGTACT | 2 cut(s) | 584, 2786 |