Rmu_sc0002148.1_g000013

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002148.1
OG0000042
Physical Location & Seq
Reverse (-)
67431 .. 74999
7569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002148.1_g000013.1.cds

Sequence Viewer

Length: 4323 bp
atggggtttcttgttgcaattattggagttgttggaaagattgctgacttcacagttgcaccagttatacaccaagtgggttatgtaatcaactacaacaagaacctcaagaaactaaagagtcaagtagatgacttgggtgatgccagagaaagcatgaagtgggatgttgaaacagaggaaagaaaaggtagagaaattaaagtaggtgtccaaaattggctgactaaagtggatgagatgactagagaagcaaacgatttcttgaaagatgaacagcatgcagagactagatgtctccatggcttttgtcctaatctaaaggttcgccatcatcgcagcaggaaatcaacaaaattggttcaagaagttgctgagctctgtgggaaaagggttgttggcgatatttcatacgatgtcaaaccagaggaggtgtggagcatacctactaaagattaccaggcctttgattcaaggactttagttgcagagaaaatcatgaatgaactgagacaatctgagaccgacatgattggggtgtacggtattgggggcgtggggaagacaacacttgctaaagaagtttatcggcaagctaaacaagaaaaaacgctatttgatgatgttgttatagtactagatgtgaaaaagattccaaatttggaagaaattcaaaaaagaattgctgaaaagttgggaatggaatttctgggagatgagactatagatagaaaagctggtcgtctttttcgtaggataaaagacaagaaagttctggtaattttggatgacatacaagaaaaagttgatttggcgattttgggacttccacgggtgtccagttgtaaagtattgttgacttctagaagcagagaagtattatcggttgagatgcgtacacaaaatgagtttcaaattgaccttttaaatgcagaagaaaactggagtttatttgagaagatggcaggtgatgttgttcaaaattctgccatacgagaagtagcaacagaagtagcccaaaagtgcggaggcttgccggttttagtggtaacagttgcaagcgccctgaagaatagaagtacagtacaagcttggaaagatgctttgcgacgcctaaaaaaatttgagaaagaaggattcacggaaaaagcatacttggctctggagtggagttacaagcaattggatgataaggagcttaggccattgttcttgctatctggacttataagaggtgtctgtataaatcttcttgacttgttgaaatatagtatgggcttgggcttgattaaaaacgtggagacaatggaagaagcacaggatgcattgcattcactggttgaaaaacttaaagattcttgtctgttgctagaggacagtgataataataaatttgtgagaatgcatgatcttgttcatgaagttgcaatccaaattgcctcgagagatcaacacgtcttcaaagttgctattggagatgatttcaaagaatggccaactaaggatttttgtaaaaagagcactatgatctttcttaataactacagtatcccccatcttcctgaaggtttgaaatgtccagaactgaaaatgtttttcttttataatagggattttgatcactgcttggaaattcccagcaaattttttgaagggatgaagaaactctgtgtgttggacttgactagattaagtatcccatcactgcctccatctcttcaattcctagaaagtattcagacgttgtgtttggatcaatgcacattgggaaacctagctttagttggagagctaagaaacttagaaattcttagctttacaatgtccaagtttagaaagttgcccaaagaaatagggcaattgacgcgtctccgattgttggatttgaatggttgctctcaacttgaagtgatttcacctaatgttatatcaaacttgaaaaggttagaaaacttgagaatgggtaacaactttaaccgatgggagggtgaaggagtcatcagtagtgaaagaagaaatgcaaaccttgaagagctaaagcacttgcctcagctaactgctttacaaatacatatcccagatgctaacatccttccagcagatttgttcaccactagtaagttaaggagattccaaatatgtattggttctgcgtggaaatgggataatgtggatgaatccttcaatgcactaaagctccgactcactgctagcaatgaattggaccaaggtttaagaatgttgctgaaaagaactgaagacttgtacttggaggggacggagggtgttaataatagtattgtctaccaaataggtgtcgaaggttttcagaaattgaagcatctccatctccatctccaaacgaatgtcgagtttacgtgtatcataaatgagaaggtatcaggatgtcaaacaatggaagagatagtatcattagatgaatctgatgaagaaattgtagacaacttattttgccatgtacaagatctggagttaaaggaccttccaaatctcactaaattctgctcaagaaattatactgaactttcaaatccatccattgggaaattgcaattagtggattgtaataaaacaaatacaacttgtgaagaaattgaagagatagactcaactagaaaccttgacattgtgattcaacactttctttttgacaataaggtagagtttccaaacttgaagaagctatccattgatgacctatcaaagttgacgacaatatggaacaatcaactttctctagagatttcaaaaaacctagagacaatagaaattgtttcgtgtgacagtttgaaaagtattttcccggtttcgatggctagaaatctcaagcaattaaaaaggttgatagtgaagagttgtggagtgcaagaaattgttgcaagagaggagggactacaaacaacacctaagtttgtgtttccaaaagtaacacaagtgattttcagtaatttgtccaacctcatgaatttctacccagggatgcatgtgtctgtttggccgtcacttaatgagttgagggtggtacaatgtgctaaagtcaaagtgtttgccgaggaaatctcaaattttcaaggacataatgagtcggaacatctcagtgttcttatcccgcagtctctctttttaattgagaaggattcatttcccaatttggaatggttgagcatgaatgcaatggagttttcgaatggtccactcccagcagcagcgcagttgtttagcaaactaaagcaactggatgttgtttgtccaaagtccaagtcacttgttttacttgacaaattactcgatccagaaggaaacagtgcagttgagattgggacccaacagcaacagcagctccaacatttaaaagagttgaggcttgttcgaatggagaagctgatgcatctaggccaggatgatgaggaggataactcacaatcagccccccgcatcccaaattttccaaacctgcaaattctatcgatgaatacttgtcacagcttaaggaatctgagatcatccgcaatatccttcaacaatctaacaactctacaagtaagtgcttgcgtgggattgaaatacttgataacttactccatggccaagagtttaacgcaactcacaaaactggaagtcgagaattgccggagactggtcgaaatagtgggaggcaatgaagatgacgattcaagacatgagattacattcaggcggttgaaacatttgaaactattgggtctaccaagactgcaacgcttttgctccggaaattgcattgctaaattccctgaagctcatccggggtatcaagatgaagtggaaatcgagtttttgaggactacatttgggaagggctatactatacagaccaatgtttgcatcagaggaagtggagatggaaaaattattgggagagagatgaagttacttttgtggatctgtatgctgacagtatcagagggaagctcaaatagaattgatgcttctgaagtttcgtcggagctaaaatcaaatggacaagttgtggatggaagtctgttcaaagatagcaagatgaatgtgactgagatgcagatagaacctccttgtgaaggagcacaagatttgatagttgccaaagattctaattatgttactactattcaatctgcgttgcgacataaagtaaacgaatcactaagtgctgtgaaaattgttgagccgatttcattgactttgagttcaactcccactaagagactggcaagcaagagttctgatgtgaatgtggctgccactgtaatagagcctaaagaagcttcaaggctgaggcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1440

Amino Acids

163.31

Weight (kDa)

6.13

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1229, 1605
AarI CACCTGC 1 cut(s) 956
Acc36I ACCTGC 2 cut(s) 956, 3483
AccB7I CCANNNNNTGG 1 cut(s) 2561
AccI GTMKAC 3 cut(s) 2304, 2460, 3745
AccII CGCG 1 cut(s) 1867
AccIII TCCGGA 1 cut(s) 3770
AciI CCGC 5 cut(s) 1026, 3131, 3454, 3528, 3718
AclWI GGATC 3 cut(s) 1761, 3305, 3950
AcoI YGGCCR 3 cut(s) 1493, 3017, 3606
AcuI CTGAAG 5 cut(s) 1088, 1584, 2277, 3816, 4014
AcyI GRCGYC 1 cut(s) 1111
AdeI CACNNNGTG 2 cut(s) 76, 4187
AfaI GTAC 8 cut(s) 542, 636, 898, 1081, 1086, 2267, 2481, 3045
AfiI CCNNNNNNNGG 5 cut(s) 1879, 1984, 2561, 3658, 4097
AflII CTTAAG 1 cut(s) 3508
AflIII ACRYGT 3 cut(s) 1453, 1865, 2378
AhdI GACNNNNNGTC 1 cut(s) 294
AhlI ACTAGT 1 cut(s) 2114
AjiI CACGTC 1 cut(s) 1456
AjnI CCWGG 3 cut(s) 459, 2995, 3417
Alw21I GWGCWC 3 cut(s) 381, 1523, 4105
AlwI GGATC 3 cut(s) 1761, 3305, 3950
Ama87I CYCGRG 1 cut(s) 1441
Aor13HI TCCGGA 1 cut(s) 3770
AoxI GGCC 6 cut(s) 462, 1202, 1493, 3017, 3415, 3606
ApeKI GCWGC 5 cut(s) 339, 3224, 3227, 3358, 4277
ArsI GACNNNNNNTTYG 4 cut(s) 1732, 1764, 3266, 3298
Asp700I GAANNNNTTC 3 cut(s) 669, 1734, 2325
AspLEI GCGC 2 cut(s) 1064, 3232
AspS9I GGNCC 4 cut(s) 2224, 2500, 3212, 3342
AsuC2I CCSGG 2 cut(s) 2825, 3807
AsuHPI GGTGA 5 cut(s) 152, 980, 1908, 2000, 2101
AsuII TTCGAA 2 cut(s) 3206, 3391
AsuNHI GCTAGC 1 cut(s) 2210
AvaI CYCGRG 1 cut(s) 1441
AvaII GGWCC 4 cut(s) 2224, 2500, 3212, 3342
BaeI ACNNNNGTAYC 2 cut(s) 1531, 1564
BalI TGGCCA 2 cut(s) 1495, 3608
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 3 cut(s) 569, 1450, 2265
Bbv12I GWGCWC 3 cut(s) 381, 1523, 4105
BbvCI CCTCAGC 2 cut(s) 2049, 4313
BbvI GCAGC 5 cut(s) 351, 3236, 3239, 3370, 4264
BceAI ACGGC 1 cut(s) 3004
BciT130I CCWGG 3 cut(s) 461, 2997, 3419
BciVI GTATCC 2 cut(s) 1559, 1706
BclI TGATCA 1 cut(s) 1618
BcnI CCSGG 2 cut(s) 2825, 3807
BcuI ACTAGT 1 cut(s) 2114
BfmI CTRYAG 2 cut(s) 723, 1543
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 3508
BfuAI ACCTGC 2 cut(s) 956, 3483
BfuI GTATCC 2 cut(s) 1559, 1706
BglII AGATCT 1 cut(s) 2485
BisI GCNGC 5 cut(s) 340, 3225, 3228, 3359, 4278
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 5 cut(s) 341, 3226, 3229, 3360, 4279
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 5 cut(s) 461, 2825, 2997, 3419, 3807
Bme18I GGWCC 4 cut(s) 2224, 2500, 3212, 3342
BmeRI GACNNNNNGTC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 1441
BmgBI CACGTC 1 cut(s) 1456
BmgT120I GGNCC 4 cut(s) 2224, 2500, 3212, 3342
BmiI GGNNCC 2 cut(s) 3343, 3344
BmrFI CCNGG 5 cut(s) 461, 2825, 2997, 3419, 3807
BmtI GCTAGC 1 cut(s) 2214
BpiI GAAGAC 3 cut(s) 569, 1450, 2265
BpmI CTGGAG 3 cut(s) 964, 1184, 2510
Bpu10I CCTNAGC 3 cut(s) 1199, 2049, 4313
Bpu1102I GCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 2 cut(s) 3206, 3391
BpuEI CTTGAG 4 cut(s) 92, 1975, 2512, 2831
BpuMI CCSGG 2 cut(s) 2825, 3807
Bsa29I ATCGAT 1 cut(s) 3488
BsaAI YACGTR 1 cut(s) 2379
BsaBI GATNNNNATC 1 cut(s) 1617
BsaHI GRCGYC 1 cut(s) 1111
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 8 cut(s) 301, 830, 2227, 2995, 2996, 3072, 3603, 3806
BsaWI WCCGGW 1 cut(s) 3770
BsaXI ACNNNNNCTCC 4 cut(s) 2181, 2211, 3345, 3375
Bsc4I CCNNNNNNNGG 5 cut(s) 1879, 1984, 2561, 3658, 4097
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 8 cut(s) 62, 840, 947, 1341, 3261, 3639, 3663, 4251
Bse3DI GCAATG 5 cut(s) 1325, 2221, 3201, 3685, 3780
Bse8I GATNNNNATC 1 cut(s) 1617
BseAI TCCGGA 1 cut(s) 3770
BseBI CCWGG 3 cut(s) 461, 2997, 3419
BseCI ATCGAT 1 cut(s) 3488
BseDI CCNNGG 8 cut(s) 301, 830, 2227, 2995, 2996, 3072, 3603, 3806
BseJI GATNNNNATC 1 cut(s) 1617
BseLI CCNNNNNNNGG 5 cut(s) 1879, 1984, 2561, 3658, 4097
BseMI GCAATG 5 cut(s) 1325, 2221, 3201, 3685, 3780
BseMII CTCAG 8 cut(s) 366, 500, 510, 2063, 3130, 3509, 4062, 4304
BseNI ACTGG 8 cut(s) 62, 840, 947, 1341, 3261, 3639, 3663, 4251
BseRI GAGGAG 3 cut(s) 443, 2921, 3443
BseXI GCAGC 5 cut(s) 351, 3236, 3239, 3370, 4264
BseYI CCCAGC 2 cut(s) 1637, 3220
BsgI GTGCAG 1 cut(s) 3348
Bsh1236I CGCG 1 cut(s) 1867
BshFI GGCC 6 cut(s) 464, 1204, 1495, 3019, 3417, 3608
BshVI ATCGAT 1 cut(s) 3488
BsiHKAI GWGCWC 3 cut(s) 381, 1523, 4105
BsiHKCI CYCGRG 1 cut(s) 1441
BsiSI CCGG 5 cut(s) 1037, 2825, 3652, 3771, 3806
BslFI GGGAC 4 cut(s) 837, 2290, 2925, 3355
BslI CCNNNNNNNGG 5 cut(s) 1879, 1984, 2561, 3658, 4097
BsmBI CGTCTC 1 cut(s) 1874
BsmFI GGGAC 4 cut(s) 837, 2290, 2925, 3355
BsmI GAATGC 3 cut(s) 1330, 1407, 3196
BsnI GGCC 6 cut(s) 464, 1204, 1495, 3019, 3417, 3608
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 1441
Bsp119I TTCGAA 2 cut(s) 3206, 3391
Bsp1286I GDGCHC 3 cut(s) 381, 1523, 4105
Bsp13I TCCGGA 1 cut(s) 3770
Bsp1407I TGTACA 1 cut(s) 2479
Bsp143I GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 2 cut(s) 301, 3603
BspACI CCGC 5 cut(s) 1026, 3131, 3454, 3528, 3718
BspANI GGCC 6 cut(s) 464, 1204, 1495, 3019, 3417, 3608
BspCNI CTCAG 8 cut(s) 367, 501, 511, 2062, 3129, 3510, 4063, 4305
BspDI ATCGAT 1 cut(s) 3488
BspEI TCCGGA 1 cut(s) 3770
BspFNI CGCG 1 cut(s) 1867
BspHI TCATGA 3 cut(s) 498, 1417, 2982
BspLI GGNNCC 2 cut(s) 3343, 3344
BspMI ACCTGC 2 cut(s) 956, 3483
BspOI GCTAGC 1 cut(s) 2214
BspPI GGATC 3 cut(s) 1761, 3305, 3950
BspQI GCTCTTC 1 cut(s) 2025
BspT104I TTCGAA 2 cut(s) 3206, 3391
BspTI CTTAAG 1 cut(s) 3508
BspTNI GGTCTC 1 cut(s) 515
BsrDI GCAATG 5 cut(s) 1325, 2221, 3201, 3685, 3780
BsrFI RCCGGY 1 cut(s) 1036
BsrGI TGTACA 1 cut(s) 2479
BsrI ACTGG 8 cut(s) 62, 840, 947, 1341, 3261, 3639, 3663, 4251
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 8 cut(s) 301, 830, 2227, 2995, 2996, 3072, 3603, 3806
BssMI GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
BssNI GRCGYC 1 cut(s) 1111
BssT1I CCWWGG 3 cut(s) 301, 2227, 3603
Bst2UI CCWGG 3 cut(s) 461, 2997, 3419
Bst6I CTCTTC 5 cut(s) 1722, 2025, 2415, 2613, 2867
BstACI GRCGYC 1 cut(s) 1111
BstAFI CTTAAG 1 cut(s) 3508
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstAUI TGTACA 1 cut(s) 2479
BstBAI YACGTR 1 cut(s) 2379
BstBI TTCGAA 2 cut(s) 3206, 3391
BstC8I GCNNGC 7 cut(s) 282, 594, 1034, 1060, 2212, 3571, 4252
BstDSI CCRYGG 3 cut(s) 301, 830, 3603
BstENI CCTNNNNNAGG 1 cut(s) 4095
BstFNI CGCG 1 cut(s) 1867
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 2 cut(s) 1064, 3232
BstKTI GATC 9 cut(s) 1411, 1450, 1530, 1621, 1756, 2488, 3313, 3524, 3945
BstMBI GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
BstMWI GCNNNNNNNGC 5 cut(s) 336, 1157, 1322, 1864, 3358
BstNI CCWGG 3 cut(s) 461, 2997, 3419
BstNSI RCATGY 2 cut(s) 284, 3008
BstSCI CCNGG 5 cut(s) 459, 2823, 2995, 3417, 3805
BstSFI CTRYAG 2 cut(s) 723, 1543
BstUI CGCG 1 cut(s) 1867
BstV1I GCAGC 5 cut(s) 351, 3236, 3239, 3370, 4264
BstV2I GAAGAC 3 cut(s) 569, 1450, 2265
BstX2I RGATCY 2 cut(s) 2485, 3942
BstYI RGATCY 2 cut(s) 2485, 3942
Bsu15I ATCGAT 1 cut(s) 3488
BsuI GTATCC 2 cut(s) 1559, 1706
BsuRI GGCC 6 cut(s) 464, 1204, 1495, 3019, 3417, 3608
BsuTUI ATCGAT 1 cut(s) 3488
BtgI CCRYGG 3 cut(s) 301, 830, 3603
BtgZI GCGATG 1 cut(s) 320
BtrI CACGTC 1 cut(s) 1456
BtsI GCAGTG 3 cut(s) 1621, 1703, 2205
BtsIMutI CAGTG 8 cut(s) 1334, 1384, 1621, 1703, 2205, 3124, 3331, 4281
BveI ACCTGC 2 cut(s) 956, 3483
Cac8I GCNNGC 7 cut(s) 282, 594, 1034, 1060, 2212, 3571, 4252
CciI TCATGA 3 cut(s) 498, 1417, 2982
CfoI GCGC 2 cut(s) 1064, 3232
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 4 cut(s) 2224, 2500, 3212, 3342
ClaI ATCGAT 1 cut(s) 3488
CseI GACGC 3 cut(s) 1119, 1856, 1873
Csp6I GTAC 8 cut(s) 541, 635, 897, 1080, 1085, 2266, 2480, 3044
CviQI GTAC 8 cut(s) 541, 635, 897, 1080, 1085, 2266, 2480, 3044
DpnI GATC 9 cut(s) 1410, 1449, 1529, 1620, 1755, 2487, 3312, 3523, 3944
DpnII GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
DraI TTTAAA 2 cut(s) 927, 3372
DraIII CACNNNGTG 2 cut(s) 76, 4187
DriI GACNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 3 cut(s) 1493, 3017, 3606
Eam1104I CTCTTC 5 cut(s) 1722, 2025, 2415, 2613, 2867
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 5 cut(s) 1722, 2025, 2415, 2613, 2867
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 301, 2227, 3603
Eco147I AGGCCT 1 cut(s) 464
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 4 cut(s) 2224, 2500, 3212, 3342
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 5 cut(s) 1088, 1584, 2277, 3816, 4014
Eco88I CYCGRG 1 cut(s) 1441
EcoICRI GAGCTC 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 4095
EcoO109I RGGNCCY 2 cut(s) 2500, 3342
EcoRII CCWGG 3 cut(s) 459, 2995, 3417
EcoT14I CCWWGG 3 cut(s) 301, 2227, 3603
EcoT22I ATGCAT 4 cut(s) 1327, 1407, 3006, 3411
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 3 cut(s) 301, 2227, 3603
Esp3I CGTCTC 1 cut(s) 1874
FaqI GGGAC 4 cut(s) 837, 2290, 2925, 3355
FauI CCCGC 2 cut(s) 3138, 3461
FbaI TGATCA 1 cut(s) 1618
FblI GTMKAC 3 cut(s) 2304, 2460, 3745
Fnu4HI GCNGC 5 cut(s) 340, 3225, 3228, 3359, 4278
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 5 cut(s) 340, 3225, 3228, 3359, 4278
GlaI GCGC 2 cut(s) 1063, 3231
GluI GCNGC 5 cut(s) 340, 3225, 3228, 3359, 4278
GsaI CCCAGC 2 cut(s) 1641, 3224
GsuI CTGGAG 3 cut(s) 964, 1184, 2510
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 6 cut(s) 464, 1204, 1495, 3019, 3417, 3608
HapII CCGG 5 cut(s) 1037, 2825, 3652, 3771, 3806
HgaI GACGC 3 cut(s) 1119, 1856, 1873
HhaI GCGC 2 cut(s) 1064, 3232
Hin1I GRCGYC 1 cut(s) 1111
Hin6I GCGC 2 cut(s) 1062, 3230
HinP1I GCGC 2 cut(s) 1062, 3230
HincII GTYRAC 2 cut(s) 858, 2730
HindII GTYRAC 2 cut(s) 858, 2730
HindIII AAGCTT 2 cut(s) 1089, 4302
HpaII CCGG 5 cut(s) 1037, 2825, 3652, 3771, 3806
HphI GGTGA 5 cut(s) 152, 980, 1908, 2000, 2101
Hpy99I CGWCG 2 cut(s) 1113, 4006
HpyCH4IV ACGT 4 cut(s) 1296, 1455, 1742, 2378
HpyF10VI GCNNNNNNNGC 5 cut(s) 336, 1157, 1322, 1864, 3358
HpySE526I ACGT 4 cut(s) 1296, 1455, 1742, 2378
Hsp92I GRCGYC 1 cut(s) 1111
HspAI GCGC 2 cut(s) 1062, 3230
KflI GGGWCCC 1 cut(s) 3342
Kpn2I TCCGGA 1 cut(s) 3770
Ksp22I TGATCA 1 cut(s) 1618
Kzo9I GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
LguI GCTCTTC 1 cut(s) 2025
LmnI GCTCC 7 cut(s) 438, 1195, 2202, 3366, 3773, 4006, 4100
Lsp1109I GCAGC 5 cut(s) 351, 3236, 3239, 3370, 4264
MaeII ACGT 4 cut(s) 1296, 1455, 1742, 2378
MalI GATC 9 cut(s) 1410, 1449, 1529, 1620, 1755, 2487, 3312, 3523, 3944
MboI GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
MfeI CAATTG 2 cut(s) 1181, 1859
MflI RGATCY 2 cut(s) 2485, 3942
MhlI GDGCHC 3 cut(s) 381, 1523, 4105
MlsI TGGCCA 2 cut(s) 1495, 3608
MluI ACGCGT 1 cut(s) 1865
MluNI TGGCCA 2 cut(s) 1495, 3608
MlyI GAGTC 5 cut(s) 130, 2004, 2196, 2621, 3113
MmeI TCCRAC 9 cut(s) 13, 1656, 1765, 1860, 2224, 3000, 3087, 3388, 3984
Mox20I TGGCCA 2 cut(s) 1495, 3608
Mph1103I ATGCAT 4 cut(s) 1327, 1407, 3006, 3411
MroI TCCGGA 1 cut(s) 3770
MroXI GAANNNNTTC 3 cut(s) 669, 1734, 2325
MscI TGGCCA 2 cut(s) 1495, 3608
MslI CAYNNNNRTG 1 cut(s) 3117
Msp20I TGGCCA 2 cut(s) 1495, 3608
MspCI CTTAAG 1 cut(s) 3508
MspI CCGG 5 cut(s) 1037, 2825, 3652, 3771, 3806
MspR9I CCNGG 5 cut(s) 461, 2825, 2997, 3419, 3807
MunI CAATTG 2 cut(s) 1181, 1859
Mva1269I GAATGC 3 cut(s) 1330, 1407, 3196
MvaI CCWGG 3 cut(s) 461, 2997, 3419
MvnI CGCG 1 cut(s) 1867
MwoI GCNNNNNNNGC 5 cut(s) 336, 1157, 1322, 1864, 3358
NciI CCSGG 2 cut(s) 2825, 3807
NcoI CCATGG 2 cut(s) 301, 3603
NdeII GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
NheI GCTAGC 1 cut(s) 2210
NlaIV GGNNCC 2 cut(s) 3343, 3344
NmeAIII GCCGAG 1 cut(s) 3097
NmuCI GTSAC 5 cut(s) 2801, 3021, 3282, 3500, 4066
NsiI ATGCAT 4 cut(s) 1327, 1407, 3006, 3411
NspI RCATGY 2 cut(s) 284, 3008
NspV TTCGAA 2 cut(s) 3206, 3391
PaeI GCATGC 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 1441
PagI TCATGA 3 cut(s) 498, 1417, 2982
PaqCI CACCTGC 1 cut(s) 956
PasI CCCWGGG 1 cut(s) 2996
PceI AGGCCT 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 2025
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PctI GAATGC 3 cut(s) 1330, 1407, 3196
PdmI GAANNNNTTC 3 cut(s) 669, 1734, 2325
PflMI CCANNNNNTGG 1 cut(s) 2561
PkrI GCNGC 5 cut(s) 341, 3226, 3229, 3360, 4279
PleI GAGTC 5 cut(s) 129, 2003, 2196, 2621, 3112
PpsI GAGTC 5 cut(s) 129, 2003, 2196, 2621, 3112
Ppu21I YACGTR 1 cut(s) 2379
PpuMI RGGWCCY 2 cut(s) 2500, 3342
PsiI TTATAA 2 cut(s) 1229, 1605
Psp124BI GAGCTC 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 2500, 3342
Psp6I CCWGG 3 cut(s) 459, 2995, 3417
PspFI CCCAGC 2 cut(s) 1637, 3220
PspGI CCWGG 3 cut(s) 459, 2995, 3417
PspN4I GGNNCC 2 cut(s) 3343, 3344
PspPI GGNCC 4 cut(s) 2224, 2500, 3212, 3342
PspPPI RGGWCCY 2 cut(s) 2500, 3342
PsuI RGATCY 2 cut(s) 2485, 3942
RsaI GTAC 8 cut(s) 542, 636, 898, 1081, 1086, 2267, 2481, 3045
RsaNI GTAC 8 cut(s) 541, 635, 897, 1080, 1085, 2266, 2480, 3044
RseI CAYNNNNRTG 1 cut(s) 3117
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 2025
SatI GCNGC 5 cut(s) 340, 3225, 3228, 3359, 4278
Sau3AI GATC 9 cut(s) 1408, 1447, 1527, 1618, 1753, 2485, 3310, 3521, 3942
Sau96I GGNCC 4 cut(s) 2224, 2500, 3212, 3342
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 5 cut(s) 130, 2004, 2196, 2621, 3113
ScrFI CCNGG 5 cut(s) 461, 2825, 2997, 3419, 3807
SduI GDGCHC 3 cut(s) 381, 1523, 4105
SfcI CTRYAG 2 cut(s) 723, 1543
Sfr274I CTCGAG 1 cut(s) 1441
SfuI TTCGAA 2 cut(s) 3206, 3391
SinI GGWCC 4 cut(s) 2224, 2500, 3212, 3342
SlaI CTCGAG 1 cut(s) 1441
SmiMI CAYNNNNRTG 1 cut(s) 3117
SmlI CTYRAG 6 cut(s) 107, 1441, 1954, 2527, 2846, 3508
SmoI CTYRAG 6 cut(s) 107, 1441, 1954, 2527, 2846, 3508
SpeI ACTAGT 1 cut(s) 2114
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 5 cut(s) 1026, 3131, 3454, 3528, 3718
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 5 cut(s) 459, 2823, 2995, 3417, 3805
StyI CCWWGG 3 cut(s) 301, 2227, 3603
TaiI ACGT 4 cut(s) 1299, 1458, 1745, 2381
TaqII GACCGA 1 cut(s) 539
TatI WGTACW 5 cut(s) 634, 1079, 1084, 2265, 2479
TscAI CASTG 8 cut(s) 1341, 1384, 1628, 1710, 2212, 3124, 3331, 4288
TseFI GTSAC 5 cut(s) 2801, 3021, 3282, 3500, 4066
TseI GCWGC 5 cut(s) 339, 3224, 3227, 3358, 4277
Tsp45I GTSAC 5 cut(s) 2801, 3021, 3282, 3500, 4066
TspGWI ACGGA 2 cut(s) 1157, 2294
TspRI CASTG 8 cut(s) 1341, 1384, 1628, 1710, 2212, 3124, 3331, 4288
Van91I CCANNNNNTGG 1 cut(s) 2561
Vha464I CTTAAG 1 cut(s) 3508
VpaK11BI GGWCC 4 cut(s) 2224, 2500, 3212, 3342
XagI CCTNNNNNAGG 1 cut(s) 4095
XbaI TCTAGA 2 cut(s) 863, 2758
XceI RCATGY 2 cut(s) 284, 3008
XcmI CCANNNNNNNNNTGG 3 cut(s) 432, 2141, 4243
XhoI CTCGAG 1 cut(s) 1441
XmiI GTMKAC 3 cut(s) 2304, 2460, 3745
XmnI GAANNNNTTC 3 cut(s) 669, 1734, 2325
ZrmI AGTACT 1 cut(s) 636
Zsp2I ATGCAT 4 cut(s) 1327, 1407, 3006, 3411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.