Rmu_sc0005276.1_g000008

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005276.1
OG0000042
Physical Location & Seq
Reverse (-)
38017 .. 41282
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005276.1_g000008.1.cds

Sequence Viewer

Length: 2559 bp
atgcagttggtgtgcgttggtgctgcaggggcagcagacatgcagcggtgctgcaggggcagcagggatgcgtgcgcaggggcgcgtaggtgctgtaggggcaggtgcacaggtaaggtaaggctagcgtgggctaggagccgcggtgatgaagaagattttcaggtttttggtttgtggtttgtggttagaactcgtgctgataacgttggacttccaagcttggagagattggtcatttatgaccttcctaagtcgataaacatatggcacaaccaactttctcaggactctttttgcatactcagaaaagttgacgtacaaagatgccacaatctaataaatatctttgctgctagtatcatgagaagattgaacgctctagacaccttacagatacataattgcaagtcaatacaattggtatttgaacttggaggatccaacgttgaaagaaatgaggacccatcggctactcatatgagtgtgtcttattgtcaaaatctccatttaatagatatagattcatgtgagagtttgaagaatatccttccagtatcagtggccaagggtcttaagcaactaaggaagctgagagtggctatttgtaatggagtggagacgattgttgcaaagggaggacaagaaacaacgcccaactctgtgttcccgaaagcagcatctgcgacattctcagaaattccaacgctaatgcatctggggaaggagaagtcccaactaattattccaaatttggaaattctagaggtgttacactgtgggaaattaaagaatctaagctcaccagcaatatcccttcagaatctcacaactctgaaagtaattggttgtcgagggctggaatgtttgataactagctcgattgcccagagtctaatgcaactcacacatctggaagtcaagtattgtgaaagactggtgcaaatagtgggaaacagcagcgaagatgaggccggaaatgagattgcttttaacaggttggagcatttggaactttcaggactgcccagtttgcaatgttttttctcgggtaccaatctttctcatcaatttacaatttgcgatgaaatcgaagagagtgatacgaaggagaatcctgatagtgctgtacaatactttctatttgacaaaaaggtgggattacctagattggaaacactgatcatccatgacctacataagttgatgacaatatggcacgaacaacttgctccagactccttttgtagactcaaaacagttgatgttcagagatgcaagagtctagtaaatatctttggggccagtattctgggaagattgaatgctctcgacgctttgaacctaaggcagtgccagtcgctacggctgatattcgaacacggaggaatcaatgctgaagaagaagatgatacatcaatcactccgtccaaattgcctgaatactcctcagtagcaaaaggtcttcagcagctgaggaagctgagtgtaacgaattgcgttggagtggaggaaattgttgcaatggaaggactgggaatgacaacacctgagtttgtgttcccaaacgcaacatctgtgaaatttggaaatctgccacgacttgcaagtttttatccagagatgcacgcttccgtgtggcctctactcggggaattgcgagttgagtcctgtgataatgtggagatttttgccctggaattttcaagatttcaggctaaacctgagttgggccttgtgggtacagctatgaagcaacctttgtttctaatcgagaagggttcattctccaacttggaagatttgcacctttactcgatggtaggtgcaatgaagaattggtggagtccacacccagcagaactcttcaccaaactaaagtctctttggtctcaatctccagtgcttcagtctggtttccttcagaacttaccccatcttgaaagccttttgctttatggttttgagaaagaagtatttgtccatgaaggaattagtagtggggaaatccaggcagttgggacactactcccgcacttaaaaagtctgacgctatttaatatgatcgacctgatgaatctaggcaaggagaactcacaaccagttcttccaaacttggagtttctacaggtgaagctttgtgggaaattaaagaatctaaggtcgtccgcaatatcctttcagaatctaaaaactttggtagtagtggaatgccacgaattggaatatttgataccttgttcgatagctcaaagcttaatgcaactggaacgtatggaagttaaggattgtcaaggactgatagagatagtggcaaatagcaaccaagatgatcatgcagtaaatgagattgcattcatgagattacaacgtttggaactttcaggtctaccaagtctccgaagattttgctccggaaattgtttagttaaaatcccatccctggatacattggtcgtgaccgactgcctggtcaagttgagtgtttcccctgatcgggtactcctcactgattttaacccagaaaggtttcttctgttgaaggaaaaacaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

852

Amino Acids

95.09

Weight (kDa)

6.16

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
AasI GACNNNNNNGTC 1 cut(s) 2471
Acc16I TGCGCA 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 93
Acc65I GGTACC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 1052
AccB7I CCANNNNNTGG 1 cut(s) 2221
AccI GTMKAC 2 cut(s) 1249, 2389
AccII CGCG 2 cut(s) 85, 144
AccIII TCCGGA 1 cut(s) 2414
AciI CCGC 5 cut(s) 46, 142, 144, 2033, 2169
AclI AACGTT 3 cut(s) 207, 447, 2371
AclWI GGATC 2 cut(s) 435, 448
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 5 cut(s) 699, 751, 759, 1583, 1700
AcuI CTGAAG 5 cut(s) 803, 1419, 1451, 1892, 1907
AfaI GTAC 5 cut(s) 321, 1054, 1131, 1744, 2502
AfiI CCNNNNNNNGG 6 cut(s) 1649, 1730, 2221, 2443, 2496, 2497
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 9 cut(s) 376, 431, 452, 541, 1324, 1342, 1707, 1943, 2542
AjnI CCWGG 4 cut(s) 1695, 2010, 2442, 2469
AjuI GAANNNNNNNTTGG 4 cut(s) 650, 682, 729, 761
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 4 cut(s) 614, 1887, 1896, 2402
Alw44I GTGCAC 1 cut(s) 106
AlwI GGATC 2 cut(s) 435, 448
AlwNI CAGNNNCTG 2 cut(s) 683, 1474
Ama87I CYCGRG 2 cut(s) 1048, 1649
Aor13HI TCCGGA 1 cut(s) 2414
AoxI GGCC 5 cut(s) 564, 972, 1302, 1640, 1732
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 9 cut(s) 23, 32, 43, 51, 60, 353, 677, 960, 1471
ApoI RAATTY 5 cut(s) 699, 751, 759, 1583, 1700
Asp700I GAANNNNTTC 2 cut(s) 159, 2529
Asp718I GGTACC 1 cut(s) 1052
AspLEI GCGC 2 cut(s) 77, 85
AspS9I GGNCC 3 cut(s) 463, 1302, 1732
AsuHPI GGTGA 4 cut(s) 158, 795, 1861, 2143
AsuII TTCGAA 1 cut(s) 1377
AsuNHI GCTAGC 1 cut(s) 124
AvaI CYCGRG 2 cut(s) 1048, 1649
AvaII GGWCC 1 cut(s) 463
AxyI CCTNAGG 1 cut(s) 1346
BaeGI GKGCMC 1 cut(s) 110
BaeI ACNNNNGTAYC 2 cut(s) 2439, 2472
BalI TGGCCA 1 cut(s) 566
BamHI GGATCC 1 cut(s) 440
BanI GGYRCC 1 cut(s) 1052
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 1457
Bbv12I GWGCWC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 1475
BbvI GCAGC 9 cut(s) 10, 38, 44, 55, 72, 340, 689, 972, 1483
BccI CCATC 4 cut(s) 475, 1813, 1944, 2446
BceAI ACGGC 1 cut(s) 1382
BcgI CGANNNNNNTGC 4 cut(s) 1211, 1245, 2391, 2425
BciT130I CCWGG 4 cut(s) 1697, 2012, 2444, 2471
BciVI GTATCC 1 cut(s) 2440
BclI TGATCA 2 cut(s) 1182, 2332
BcoDI GTCTC 4 cut(s) 614, 1887, 1896, 2402
BfaI CTAG 9 cut(s) 125, 135, 357, 383, 764, 876, 1167, 1286, 2081
BfmI CTRYAG 4 cut(s) 24, 52, 94, 2126
BfrI CTTAAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 93
BfuI GTATCC 1 cut(s) 2440
Bme1390I CCNGG 4 cut(s) 1697, 2012, 2444, 2471
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 2 cut(s) 1048, 1649
BmgT120I GGNCC 3 cut(s) 463, 1302, 1732
BmiI GGNNCC 5 cut(s) 140, 442, 465, 1054, 1303
BmrFI CCNGG 4 cut(s) 1697, 2012, 2444, 2471
BmrI ACTGGG 2 cut(s) 1023, 1544
BmsI GCATC 6 cut(s) 58, 317, 689, 724, 1265, 1614
BmtI GCTAGC 1 cut(s) 128
BmuI ACTGGG 2 cut(s) 1023, 1544
BpiI GAAGAC 1 cut(s) 1457
BpmI CTGGAG 2 cut(s) 1218, 1884
Bpu10I CCTNAGC 1 cut(s) 1475
Bpu14I TTCGAA 1 cut(s) 1377
BsaI GGTCTC 1 cut(s) 1896
BsaJI CCNNGG 4 cut(s) 142, 567, 1695, 2442
BsaWI WCCGGW 1 cut(s) 2414
BsaXI ACNNNNNCTCC 4 cut(s) 130, 160, 2382, 2412
Bsc4I CCNNNNNNNGG 6 cut(s) 1649, 1730, 2221, 2443, 2496, 2497
Bse1I ACTGG 9 cut(s) 554, 942, 1029, 1305, 1357, 1539, 1901, 2102, 2271
Bse21I CCTNAGG 1 cut(s) 1346
Bse3DI GCAATG 3 cut(s) 1043, 1530, 1836
BseAI TCCGGA 1 cut(s) 2414
BseBI CCWGG 4 cut(s) 1697, 2012, 2444, 2471
BseDI CCNNGG 4 cut(s) 142, 567, 1695, 2442
BseGI GGATG 3 cut(s) 73, 1185, 2438
BseLI CCNNNNNNNGG 6 cut(s) 1649, 1730, 2221, 2443, 2496, 2497
BseMI GCAATG 3 cut(s) 1043, 1530, 1836
BseMII CTCAG 9 cut(s) 299, 319, 584, 708, 1464, 1466, 1475, 1542, 1716
BseNI ACTGG 9 cut(s) 554, 942, 1029, 1305, 1357, 1539, 1901, 2102, 2271
BseRI GAGGAG 2 cut(s) 1438, 2495
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 9 cut(s) 10, 38, 44, 55, 72, 340, 689, 972, 1483
BseYI CCCAGC 1 cut(s) 1855
Bsh1236I CGCG 2 cut(s) 85, 144
BshFI GGCC 5 cut(s) 566, 974, 1304, 1642, 1734
BshNI GGYRCC 1 cut(s) 1052
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 2 cut(s) 1048, 1649
BsiSI CCGG 2 cut(s) 975, 2415
BslFI GGGAC 2 cut(s) 718, 2035
BslI CCNNNNNNNGG 6 cut(s) 1649, 1730, 2221, 2443, 2496, 2497
BsmAI GTCTC 4 cut(s) 614, 1887, 1896, 2402
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 2 cut(s) 718, 2035
BsmI GAATGC 3 cut(s) 1330, 2216, 2354
BsnI GGCC 5 cut(s) 566, 974, 1304, 1642, 1734
Bso31I GGTCTC 1 cut(s) 1896
BsoBI CYCGRG 2 cut(s) 1048, 1649
Bsp119I TTCGAA 1 cut(s) 1377
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 2414
Bsp1407I TGTACA 1 cut(s) 1129
Bsp143I GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
BspACI CCGC 5 cut(s) 46, 142, 144, 2033, 2169
BspANI GGCC 5 cut(s) 566, 974, 1304, 1642, 1734
BspCNI CTCAG 9 cut(s) 298, 318, 585, 707, 1463, 1467, 1476, 1543, 1717
BspEI TCCGGA 1 cut(s) 2414
BspFNI CGCG 2 cut(s) 85, 144
BspHI TCATGA 2 cut(s) 363, 2358
BspLI GGNNCC 5 cut(s) 140, 442, 465, 1054, 1303
BspMAI CTGCAG 2 cut(s) 28, 56
BspMI ACCTGC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 2 cut(s) 435, 448
BspT104I TTCGAA 1 cut(s) 1377
BspT107I GGYRCC 1 cut(s) 1052
BspTI CTTAAG 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 1896
BsrDI GCAATG 3 cut(s) 1043, 1530, 1836
BsrGI TGTACA 1 cut(s) 1129
BsrI ACTGG 9 cut(s) 554, 942, 1029, 1305, 1357, 1539, 1901, 2102, 2271
BssECI CCNNGG 4 cut(s) 142, 567, 1695, 2442
BssMI GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
BssSI CACGAG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 4 cut(s) 1697, 2012, 2444, 2471
Bst4CI ACNGT 2 cut(s) 779, 1261
Bst6I CTCTTC 2 cut(s) 1089, 1871
BstAFI CTTAAG 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 683
BstAUI TGTACA 1 cut(s) 1129
BstBI TTCGAA 1 cut(s) 1377
BstC8I GCNNGC 3 cut(s) 73, 126, 1629
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 3 cut(s) 73, 1185, 2438
BstFNI CGCG 2 cut(s) 85, 144
BstHHI GCGC 2 cut(s) 77, 85
BstKTI GATC 5 cut(s) 443, 1185, 2067, 2335, 2497
BstMAI GTCTC 4 cut(s) 614, 1887, 1896, 2402
BstMBI GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
BstMWI GCNNNNNNNGC 9 cut(s) 29, 32, 57, 60, 99, 683, 1033, 1334, 1480
BstNI CCWGG 4 cut(s) 1697, 2012, 2444, 2471
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 4 cut(s) 1695, 2010, 2442, 2469
BstSFI CTRYAG 4 cut(s) 24, 52, 94, 2126
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 2 cut(s) 85, 144
BstV1I GCAGC 9 cut(s) 10, 38, 44, 55, 72, 340, 689, 972, 1483
BstV2I GAAGAC 1 cut(s) 1457
BstX2I RGATCY 1 cut(s) 440
BstXI CCANNNNNNTGG 2 cut(s) 1312, 2018
BstYI RGATCY 1 cut(s) 440
Bsu36I CCTNAGG 1 cut(s) 1346
BsuI GTATCC 1 cut(s) 2440
BsuRI GGCC 5 cut(s) 566, 974, 1304, 1642, 1734
BtgI CCRYGG 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 1098
BtsCI GGATG 3 cut(s) 73, 1185, 2438
BtsI GCAGTG 1 cut(s) 1358
BtsIMutI CAGTG 6 cut(s) 567, 775, 1178, 1358, 1908, 2508
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 73, 126, 1629
CaiI CAGNNNCTG 2 cut(s) 683, 1474
CciI TCATGA 2 cut(s) 363, 2358
CfoI GCGC 2 cut(s) 77, 85
Cfr13I GGNCC 3 cut(s) 463, 1302, 1732
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 2 cut(s) 1343, 2059
Csp6I GTAC 5 cut(s) 320, 1053, 1130, 1743, 2501
CviAII CATG 7 cut(s) 40, 364, 528, 1190, 1985, 2336, 2359
CviQI GTAC 5 cut(s) 320, 1053, 1130, 1743, 2501
DpnI GATC 5 cut(s) 442, 1184, 2066, 2334, 2496
DpnII GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
DrdI GACNNNNNNGTC 1 cut(s) 2471
DseDI GACNNNNNNGTC 1 cut(s) 2471
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 1089, 1871
EarI CTCTTC 2 cut(s) 1089, 1871
Eco130I CCWWGG 1 cut(s) 567
Eco31I GGTCTC 1 cut(s) 1896
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 5 cut(s) 803, 1419, 1451, 1892, 1907
Eco81I CCTNAGG 1 cut(s) 1346
Eco88I CYCGRG 2 cut(s) 1048, 1649
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 4 cut(s) 1695, 2010, 2442, 2469
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 7 cut(s) 43, 367, 531, 1193, 1988, 2339, 2362
FaqI GGGAC 2 cut(s) 718, 2035
FatI CATG 7 cut(s) 39, 363, 527, 1189, 1984, 2335, 2358
FauI CCCGC 1 cut(s) 2040
FauNDI CATATG 2 cut(s) 266, 480
FbaI TGATCA 2 cut(s) 1182, 2332
FblI GTMKAC 2 cut(s) 1249, 2389
FokI GGATG 3 cut(s) 80, 1172, 2425
FspBI CTAG 9 cut(s) 125, 135, 357, 383, 764, 876, 1167, 1286, 2081
FspI TGCGCA 1 cut(s) 76
GlaI GCGC 2 cut(s) 76, 84
GsaI CCCAGC 1 cut(s) 1859
GsuI CTGGAG 2 cut(s) 1218, 1884
HaeIII GGCC 5 cut(s) 566, 974, 1304, 1642, 1734
HapII CCGG 2 cut(s) 975, 2415
HgaI GACGC 2 cut(s) 1343, 2059
HhaI GCGC 2 cut(s) 77, 85
Hin1II CATG 7 cut(s) 43, 367, 531, 1193, 1988, 2339, 2362
Hin6I GCGC 2 cut(s) 75, 83
HinP1I GCGC 2 cut(s) 75, 83
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 3 cut(s) 220, 2135, 2254
HpaII CCGG 2 cut(s) 975, 2415
HphI GGTGA 4 cut(s) 158, 795, 1861, 2143
Hpy166II GTNNAC 5 cut(s) 108, 316, 1250, 1850, 2390
Hpy188I TCNGA 9 cut(s) 308, 697, 822, 837, 1272, 1926, 2049, 2184, 2402
Hpy8I GTNNAC 5 cut(s) 108, 316, 1250, 1850, 2390
Hpy99I CGWCG 1 cut(s) 1337
HpyCH4III ACNGT 2 cut(s) 779, 1261
HpyCH4IV ACGT 5 cut(s) 207, 318, 447, 2272, 2371
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 32, 57, 60, 99, 683, 1033, 1334, 1480
HpySE526I ACGT 5 cut(s) 207, 318, 447, 2272, 2371
Hsp92II CATG 7 cut(s) 43, 367, 531, 1193, 1988, 2339, 2362
HspAI GCGC 2 cut(s) 75, 83
Kpn2I TCCGGA 1 cut(s) 2414
KpnI GGTACC 1 cut(s) 1056
Ksp22I TGATCA 2 cut(s) 1182, 2332
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
LmnI GCTCC 4 cut(s) 138, 1003, 1237, 2417
Lsp1109I GCAGC 9 cut(s) 10, 38, 44, 55, 72, 340, 689, 972, 1483
LweI GCATC 6 cut(s) 58, 317, 689, 724, 1265, 1614
MaeI CTAG 9 cut(s) 125, 135, 357, 383, 764, 876, 1167, 1286, 2081
MaeII ACGT 5 cut(s) 207, 318, 447, 2272, 2371
MaeIII GTNAC 3 cut(s) 771, 1489, 2458
MalI GATC 5 cut(s) 442, 1184, 2066, 2334, 2496
MboI GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 110
MlsI TGGCCA 1 cut(s) 566
MluNI TGGCCA 1 cut(s) 566
MlyI GAGTC 7 cut(s) 284, 901, 1232, 1245, 1291, 1676, 1855
MmeI TCCRAC 6 cut(s) 190, 468, 728, 981, 1483, 1815
Mox20I TGGCCA 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 717
MroI TCCGGA 1 cut(s) 2414
MroXI GAANNNNTTC 2 cut(s) 159, 2529
MscI TGGCCA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 566
MspA1I CMGCKG 3 cut(s) 46, 144, 1474
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 2 cut(s) 975, 2415
MspR9I CCNGG 4 cut(s) 1697, 2012, 2444, 2471
MunI CAATTG 1 cut(s) 419
Mva1269I GAATGC 3 cut(s) 1330, 2216, 2354
MvaI CCWGG 4 cut(s) 1697, 2012, 2444, 2471
MvnI CGCG 2 cut(s) 85, 144
MwoI GCNNNNNNNGC 9 cut(s) 29, 32, 57, 60, 99, 683, 1033, 1334, 1480
NdeI CATATG 2 cut(s) 266, 480
NdeII GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 7 cut(s) 43, 367, 531, 1193, 1988, 2339, 2362
NlaIV GGNNCC 5 cut(s) 140, 442, 465, 1054, 1303
NmuCI GTSAC 1 cut(s) 2458
NsbI TGCGCA 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 717
NspI RCATGY 1 cut(s) 43
NspV TTCGAA 1 cut(s) 1377
PagI TCATGA 2 cut(s) 363, 2358
PaqCI CACCTGC 1 cut(s) 93
PctI GAATGC 3 cut(s) 1330, 2216, 2354
PdmI GAANNNNTTC 2 cut(s) 159, 2529
PfeI GAWTC 8 cut(s) 524, 793, 823, 1114, 1389, 2077, 2155, 2185
PflMI CCANNNNNTGG 1 cut(s) 2221
PleI GAGTC 7 cut(s) 284, 900, 1232, 1245, 1290, 1675, 1854
PpsI GAGTC 7 cut(s) 284, 900, 1232, 1245, 1290, 1675, 1854
PpuMI RGGWCCY 1 cut(s) 463
Psp1406I AACGTT 3 cut(s) 207, 447, 2371
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 4 cut(s) 1695, 2010, 2442, 2469
PspFI CCCAGC 1 cut(s) 1855
PspGI CCWGG 4 cut(s) 1695, 2010, 2442, 2469
PspN4I GGNNCC 5 cut(s) 140, 442, 465, 1054, 1303
PspPI GGNCC 3 cut(s) 463, 1302, 1732
PspPPI RGGWCCY 1 cut(s) 463
PstI CTGCAG 2 cut(s) 28, 56
PstNI CAGNNNCTG 2 cut(s) 683, 1474
PsuI RGATCY 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 1474
RsaI GTAC 5 cut(s) 321, 1054, 1131, 1744, 2502
RsaNI GTAC 5 cut(s) 320, 1053, 1130, 1743, 2501
RseI CAYNNNNRTG 1 cut(s) 483
SacII CCGCGG 1 cut(s) 145
Sau3AI GATC 5 cut(s) 440, 1182, 2064, 2332, 2494
Sau96I GGNCC 3 cut(s) 463, 1302, 1732
SchI GAGTC 7 cut(s) 284, 901, 1232, 1245, 1291, 1676, 1855
ScrFI CCNGG 4 cut(s) 1697, 2012, 2444, 2471
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 6 cut(s) 58, 317, 689, 724, 1265, 1614
SfcI CTRYAG 4 cut(s) 24, 52, 94, 2126
Sfr303I CCGCGG 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 1377
SgrBI CCGCGG 1 cut(s) 145
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
SsiI CCGC 5 cut(s) 46, 142, 144, 2033, 2169
SspI AATATT 1 cut(s) 2228
SspMI CTAG 9 cut(s) 125, 135, 357, 383, 764, 876, 1167, 1286, 2081
StyD4I CCNGG 4 cut(s) 1695, 2010, 2442, 2469
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 779, 1261
TaiI ACGT 5 cut(s) 210, 321, 450, 2275, 2374
TaqII GACCGA 1 cut(s) 2477
TatI WGTACW 1 cut(s) 1129
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 8 cut(s) 524, 793, 823, 1114, 1389, 2077, 2155, 2185
TscAI CASTG 6 cut(s) 567, 782, 1185, 1358, 1908, 2515
TseFI GTSAC 1 cut(s) 2458
TseI GCWGC 9 cut(s) 23, 32, 43, 51, 60, 353, 677, 960, 1471
Tsp45I GTSAC 1 cut(s) 2458
TspDTI ATGAA 9 cut(s) 165, 516, 1101, 1766, 1773, 1847, 2001, 2090, 2347
TspGWI ACGGA 3 cut(s) 1398, 1416, 1624
TspRI CASTG 6 cut(s) 567, 782, 1185, 1358, 1908, 2515
Van91I CCANNNNNTGG 1 cut(s) 2221
Vha464I CTTAAG 1 cut(s) 575
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 5 cut(s) 699, 751, 759, 1583, 1700
XbaI TCTAGA 2 cut(s) 382, 763
XceI RCATGY 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 1249, 2389
XmnI GAANNNNTTC 2 cut(s) 159, 2529
XspI CTAG 9 cut(s) 125, 135, 357, 383, 764, 876, 1167, 1286, 2081
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.