Zinc finger protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| OPT | PF03169 | 61 - 551 | 2.1e-138 | OPT oligopeptide transporter protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 533 |
| Acc65I | GGTACC | 1 cut(s) | 252 |
| AccB1I | GGYRCC | 2 cut(s) | 252, 440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 322 |
| AccI | GTMKAC | 3 cut(s) | 453, 688, 990 |
| AccII | CGCG | 2 cut(s) | 343, 345 |
| AciI | CCGC | 1 cut(s) | 327 |
| AclWI | GGATC | 2 cut(s) | 341, 785 |
| AcoI | YGGCCR | 4 cut(s) | 313, 324, 608, 1314 |
| AcsI | RAATTY | 2 cut(s) | 371, 616 |
| AcyI | GRCGYC | 1 cut(s) | 441 |
| AfaI | GTAC | 5 cut(s) | 254, 581, 1286, 1496, 1508 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 196, 322, 674, 774, 1210, 1391 |
| AflIII | ACRYGT | 2 cut(s) | 409, 683 |
| AgsI | TTSAA | 7 cut(s) | 355, 397, 626, 1243, 1379, 1480, 1546 |
| AjiI | CACGTC | 1 cut(s) | 412 |
| AjnI | CCWGG | 4 cut(s) | 42, 385, 1471, 1516 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1526, 1558 |
| AluBI | AGCT | 2 cut(s) | 599, 1603 |
| AluI | AGCT | 2 cut(s) | 599, 1603 |
| Alw26I | GTCTC | 2 cut(s) | 153, 634 |
| AlwI | GGATC | 2 cut(s) | 341, 785 |
| AoxI | GGCC | 8 cut(s) | 288, 313, 324, 389, 608, 665, 1098, 1314 |
| ApaI | GGGCCC | 1 cut(s) | 393 |
| ApeKI | GCWGC | 4 cut(s) | 12, 596, 932, 1166 |
| ApoI | RAATTY | 2 cut(s) | 371, 616 |
| Asp718I | GGTACC | 1 cut(s) | 252 |
| AspA2I | CCTAGG | 1 cut(s) | 202 |
| AspLEI | GCGC | 3 cut(s) | 345, 443, 851 |
| AsuC2I | CCSGG | 1 cut(s) | 741 |
| AsuHPI | GGTGA | 5 cut(s) | 93, 367, 412, 1333, 1420 |
| AvaII | GGWCC | 6 cut(s) | 199, 258, 360, 867, 1024, 1115 |
| AvrII | CCTAGG | 1 cut(s) | 202 |
| BaeGI | GKGCMC | 2 cut(s) | 309, 393 |
| BalI | TGGCCA | 2 cut(s) | 610, 1316 |
| BanI | GGYRCC | 2 cut(s) | 252, 440 |
| BanII | GRGCYC | 3 cut(s) | 393, 646, 840 |
| BauI | CACGAG | 2 cut(s) | 650, 772 |
| BbsI | GAAGAC | 1 cut(s) | 340 |
| BbvI | GCAGC | 4 cut(s) | 24, 608, 919, 1153 |
| BccI | CCATC | 8 cut(s) | 290, 317, 360, 431, 1034, 1092, 1463, 1586 |
| BceAI | ACGGC | 3 cut(s) | 284, 680, 1113 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1120, 1154 |
| BciT130I | CCWGG | 4 cut(s) | 44, 387, 1473, 1518 |
| BclI | TGATCA | 1 cut(s) | 1369 |
| BcnI | CCSGG | 1 cut(s) | 741 |
| BcoDI | GTCTC | 2 cut(s) | 153, 634 |
| BfaI | CTAG | 5 cut(s) | 72, 203, 330, 1403, 1629 |
| BfmI | CTRYAG | 1 cut(s) | 715 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 287 |
| BisI | GCNGC | 5 cut(s) | 13, 327, 597, 933, 1167 |
| BlnI | CCTAGG | 1 cut(s) | 202 |
| BlsI | GCNGC | 5 cut(s) | 14, 328, 598, 934, 1168 |
| Bme1390I | CCNGG | 5 cut(s) | 44, 387, 741, 1473, 1518 |
| Bme18I | GGWCC | 6 cut(s) | 199, 258, 360, 867, 1024, 1115 |
| BmgBI | CACGTC | 1 cut(s) | 412 |
| BmiI | GGNNCC | 7 cut(s) | 200, 208, 254, 361, 391, 442, 1674 |
| BmrFI | CCNGG | 5 cut(s) | 44, 387, 741, 1473, 1518 |
| BoxI | GACNNNNGTC | 1 cut(s) | 344 |
| BpiI | GAAGAC | 1 cut(s) | 340 |
| BpuEI | CTTGAG | 1 cut(s) | 1557 |
| BpuMI | CCSGG | 1 cut(s) | 741 |
| BsaAI | YACGTR | 1 cut(s) | 686 |
| BsaHI | GRCGYC | 1 cut(s) | 441 |
| BsaJI | CCNNGG | 9 cut(s) | 24, 202, 385, 386, 669, 908, 1204, 1385, 1516 |
| BsaWI | WCCGGW | 2 cut(s) | 155, 255 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 196, 322, 674, 774, 1210, 1391 |
| Bse118I | RCCGGY | 1 cut(s) | 124 |
| Bse1I | ACTGG | 5 cut(s) | 241, 316, 869, 983, 1526 |
| Bse3DI | GCAATG | 3 cut(s) | 702, 1149, 1332 |
| BseBI | CCWGG | 4 cut(s) | 44, 387, 1473, 1518 |
| BseDI | CCNNGG | 9 cut(s) | 24, 202, 385, 386, 669, 908, 1204, 1385, 1516 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 196, 322, 674, 774, 1210, 1391 |
| BseMI | GCAATG | 3 cut(s) | 702, 1149, 1332 |
| BseMII | CTCAG | 3 cut(s) | 554, 1290, 1482 |
| BseNI | ACTGG | 5 cut(s) | 241, 316, 869, 983, 1526 |
| BseRI | GAGGAG | 3 cut(s) | 82, 215, 868 |
| BseSI | GKGCMC | 2 cut(s) | 309, 393 |
| BseXI | GCAGC | 4 cut(s) | 24, 608, 919, 1153 |
| BseYI | CCCAGC | 3 cut(s) | 558, 563, 810 |
| BsgI | GTGCAG | 2 cut(s) | 170, 1152 |
| Bsh1236I | CGCG | 2 cut(s) | 343, 345 |
| BshFI | GGCC | 8 cut(s) | 290, 315, 326, 391, 610, 667, 1100, 1316 |
| BshNI | GGYRCC | 2 cut(s) | 252, 440 |
| BsiSI | CCGG | 6 cut(s) | 125, 156, 256, 438, 444, 741 |
| BslFI | GGGAC | 1 cut(s) | 373 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 196, 322, 674, 774, 1210, 1391 |
| BsmAI | GTCTC | 2 cut(s) | 153, 634 |
| BsmBI | CGTCTC | 1 cut(s) | 153 |
| BsmFI | GGGAC | 1 cut(s) | 373 |
| BsnI | GGCC | 8 cut(s) | 290, 315, 326, 391, 610, 667, 1100, 1316 |
| Bsp120I | GGGCCC | 1 cut(s) | 389 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 393, 646, 840 |
| Bsp143I | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| Bsp19I | CCATGG | 3 cut(s) | 24, 908, 1204 |
| BspACI | CCGC | 1 cut(s) | 327 |
| BspANI | GGCC | 8 cut(s) | 290, 315, 326, 391, 610, 667, 1100, 1316 |
| BspCNI | CTCAG | 3 cut(s) | 553, 1291, 1483 |
| BspFNI | CGCG | 2 cut(s) | 343, 345 |
| BspLI | GGNNCC | 7 cut(s) | 200, 208, 254, 361, 391, 442, 1674 |
| BspPI | GGATC | 2 cut(s) | 341, 785 |
| BspT107I | GGYRCC | 2 cut(s) | 252, 440 |
| BsrDI | GCAATG | 3 cut(s) | 702, 1149, 1332 |
| BsrFI | RCCGGY | 1 cut(s) | 124 |
| BsrI | ACTGG | 5 cut(s) | 241, 316, 869, 983, 1526 |
| BssAI | RCCGGY | 1 cut(s) | 124 |
| BssECI | CCNNGG | 9 cut(s) | 24, 202, 385, 386, 669, 908, 1204, 1385, 1516 |
| BssMI | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| BssNAI | GTATAC | 1 cut(s) | 689 |
| BssNI | GRCGYC | 1 cut(s) | 441 |
| BssSI | CACGAG | 2 cut(s) | 650, 772 |
| BssT1I | CCWWGG | 6 cut(s) | 24, 202, 669, 908, 1204, 1385 |
| Bst1107I | GTATAC | 1 cut(s) | 689 |
| Bst2BI | CACGAG | 2 cut(s) | 650, 772 |
| Bst2UI | CCWGG | 4 cut(s) | 44, 387, 1473, 1518 |
| Bst4CI | ACNGT | 5 cut(s) | 148, 270, 451, 475, 693 |
| Bst6I | CTCTTC | 3 cut(s) | 755, 1034, 1205 |
| BstACI | GRCGYC | 1 cut(s) | 441 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1175 |
| BstBAI | YACGTR | 1 cut(s) | 686 |
| BstC8I | GCNNGC | 2 cut(s) | 612, 904 |
| BstDEI | CTNAG | 4 cut(s) | 540, 1299, 1491, 1661 |
| BstDSI | CCRYGG | 3 cut(s) | 24, 908, 1204 |
| BstFNI | CGCG | 2 cut(s) | 343, 345 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 3 cut(s) | 345, 443, 851 |
| BstKTI | GATC | 4 cut(s) | 336, 780, 819, 1372 |
| BstMAI | GTCTC | 2 cut(s) | 153, 634 |
| BstMBI | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 130, 287, 296, 929, 1175 |
| BstNI | CCWGG | 4 cut(s) | 44, 387, 1473, 1518 |
| BstNSI | RCATGY | 1 cut(s) | 1356 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 344 |
| BstSCI | CCNGG | 5 cut(s) | 42, 385, 739, 1471, 1516 |
| BstSFI | CTRYAG | 1 cut(s) | 715 |
| BstSLI | GKGCMC | 2 cut(s) | 309, 393 |
| BstUI | CGCG | 2 cut(s) | 343, 345 |
| BstV1I | GCAGC | 4 cut(s) | 24, 608, 919, 1153 |
| BstV2I | GAAGAC | 1 cut(s) | 340 |
| BstX2I | RGATCY | 1 cut(s) | 777 |
| BstYI | RGATCY | 1 cut(s) | 777 |
| BstZ17I | GTATAC | 1 cut(s) | 689 |
| BsuRI | GGCC | 8 cut(s) | 290, 315, 326, 391, 610, 667, 1100, 1316 |
| BtgI | CCRYGG | 3 cut(s) | 24, 908, 1204 |
| BtrI | CACGTC | 1 cut(s) | 412 |
| BtsI | GCAGTG | 2 cut(s) | 918, 1173 |
| BtsIMutI | CAGTG | 3 cut(s) | 266, 918, 1173 |
| Cac8I | GCNNGC | 2 cut(s) | 612, 904 |
| CfoI | GCGC | 3 cut(s) | 345, 443, 851 |
| Cfr10I | RCCGGY | 1 cut(s) | 124 |
| CpoI | CGGWCCG | 1 cut(s) | 258 |
| CseI | GACGC | 3 cut(s) | 208, 334, 349 |
| Csp6I | GTAC | 5 cut(s) | 253, 580, 1285, 1495, 1507 |
| CspI | CGGWCCG | 1 cut(s) | 258 |
| CviAII | CATG | 9 cut(s) | 25, 322, 909, 952, 1190, 1205, 1353, 1615, 1642 |
| CviQI | GTAC | 5 cut(s) | 253, 580, 1285, 1495, 1507 |
| DdeI | CTNAG | 4 cut(s) | 540, 1299, 1491, 1661 |
| DinI | GGCGCC | 1 cut(s) | 442 |
| DpnI | GATC | 4 cut(s) | 335, 779, 818, 1371 |
| DpnII | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| EaeI | YGGCCR | 4 cut(s) | 313, 324, 608, 1314 |
| Eam1104I | CTCTTC | 3 cut(s) | 755, 1034, 1205 |
| EarI | CTCTTC | 3 cut(s) | 755, 1034, 1205 |
| Eco130I | CCWWGG | 6 cut(s) | 24, 202, 669, 908, 1204, 1385 |
| Eco24I | GRGCYC | 3 cut(s) | 393, 646, 840 |
| Eco32I | GATATC | 1 cut(s) | 1523 |
| Eco47I | GGWCC | 6 cut(s) | 199, 258, 360, 867, 1024, 1115 |
| EcoO109I | RGGNCCY | 3 cut(s) | 199, 390, 1024 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 4 cut(s) | 42, 385, 1471, 1516 |
| EcoRV | GATATC | 1 cut(s) | 1523 |
| EcoT14I | CCWWGG | 6 cut(s) | 24, 202, 669, 908, 1204, 1385 |
| EcoT38I | GRGCYC | 3 cut(s) | 393, 646, 840 |
| EgeI | GGCGCC | 1 cut(s) | 442 |
| EheI | GGCGCC | 1 cut(s) | 442 |
| ErhI | CCWWGG | 6 cut(s) | 24, 202, 669, 908, 1204, 1385 |
| Esp3I | CGTCTC | 1 cut(s) | 153 |
| FaeI | CATG | 9 cut(s) | 28, 325, 912, 955, 1193, 1208, 1356, 1618, 1645 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1104, 1136 |
| FaqI | GGGAC | 1 cut(s) | 373 |
| FatI | CATG | 9 cut(s) | 24, 321, 908, 951, 1189, 1204, 1352, 1614, 1641 |
| FauNDI | CATATG | 1 cut(s) | 971 |
| FbaI | TGATCA | 1 cut(s) | 1369 |
| FblI | GTMKAC | 3 cut(s) | 453, 688, 990 |
| Fnu4HI | GCNGC | 5 cut(s) | 13, 327, 597, 933, 1167 |
| FriOI | GRGCYC | 3 cut(s) | 393, 646, 840 |
| Fsp4HI | GCNGC | 5 cut(s) | 13, 327, 597, 933, 1167 |
| FspBI | CTAG | 5 cut(s) | 72, 203, 330, 1403, 1629 |
| GlaI | GCGC | 3 cut(s) | 344, 442, 850 |
| GluI | GCNGC | 5 cut(s) | 13, 327, 597, 933, 1167 |
| GsaI | CCCAGC | 3 cut(s) | 562, 567, 814 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 8 cut(s) | 290, 315, 326, 391, 610, 667, 1100, 1316 |
| HapII | CCGG | 6 cut(s) | 125, 156, 256, 438, 444, 741 |
| HgaI | GACGC | 3 cut(s) | 208, 334, 349 |
| HhaI | GCGC | 3 cut(s) | 345, 443, 851 |
| Hin1I | GRCGYC | 1 cut(s) | 441 |
| Hin1II | CATG | 9 cut(s) | 28, 325, 912, 955, 1193, 1208, 1356, 1618, 1645 |
| Hin6I | GCGC | 3 cut(s) | 343, 441, 849 |
| HinP1I | GCGC | 3 cut(s) | 343, 441, 849 |
| HincII | GTYRAC | 2 cut(s) | 762, 963 |
| HindII | GTYRAC | 2 cut(s) | 762, 963 |
| HindIII | AAGCTT | 1 cut(s) | 1601 |
| HinfI | GANTC | 5 cut(s) | 20, 843, 964, 1073, 1570 |
| HpaI | GTTAAC | 1 cut(s) | 762 |
| HpaII | CCGG | 6 cut(s) | 125, 156, 256, 438, 444, 741 |
| HphI | GGTGA | 5 cut(s) | 93, 367, 412, 1333, 1420 |
| Hpy166II | GTNNAC | 7 cut(s) | 454, 689, 762, 870, 963, 991, 1118 |
| Hpy188I | TCNGA | 7 cut(s) | 191, 575, 842, 890, 1021, 1326, 1467 |
| Hpy188III | TCNNGA | 4 cut(s) | 72, 181, 337, 1046 |
| Hpy8I | GTNNAC | 7 cut(s) | 454, 689, 762, 870, 963, 991, 1118 |
| Hpy99I | CGWCG | 2 cut(s) | 305, 343 |
| HpyAV | CCTTC | 9 cut(s) | 74, 196, 403, 570, 718, 1015, 1106, 1203, 1409 |
| HpyCH4III | ACNGT | 5 cut(s) | 148, 270, 451, 475, 693 |
| HpyCH4IV | ACGT | 5 cut(s) | 399, 411, 506, 685, 987 |
| HpyCH4V | TGCA | 7 cut(s) | 151, 902, 1169, 1196, 1279, 1337, 1591 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 130, 287, 296, 929, 1175 |
| HpyF3I | CTNAG | 4 cut(s) | 540, 1299, 1491, 1661 |
| HpySE526I | ACGT | 5 cut(s) | 399, 411, 506, 685, 987 |
| Hsp92I | GRCGYC | 1 cut(s) | 441 |
| Hsp92II | CATG | 9 cut(s) | 28, 325, 912, 955, 1193, 1208, 1356, 1618, 1645 |
| HspAI | GCGC | 3 cut(s) | 343, 441, 849 |
| KasI | GGCGCC | 1 cut(s) | 440 |
| KpnI | GGTACC | 1 cut(s) | 256 |
| Ksp22I | TGATCA | 1 cut(s) | 1369 |
| KspAI | GTTAAC | 1 cut(s) | 762 |
| Kzo9I | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| LmnI | GCTCC | 2 cut(s) | 130, 1222 |
| Lsp1109I | GCAGC | 4 cut(s) | 24, 608, 919, 1153 |
| MaeI | CTAG | 5 cut(s) | 72, 203, 330, 1403, 1629 |
| MaeII | ACGT | 5 cut(s) | 399, 411, 506, 685, 987 |
| MaeIII | GTNAC | 4 cut(s) | 469, 679, 974, 1607 |
| MalI | GATC | 4 cut(s) | 335, 779, 818, 1371 |
| MboI | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| MfeI | CAATTG | 1 cut(s) | 1379 |
| MflI | RGATCY | 1 cut(s) | 777 |
| MhlI | GDGCHC | 4 cut(s) | 309, 393, 646, 840 |
| MlsI | TGGCCA | 2 cut(s) | 610, 1316 |
| MluCI | AATT | 4 cut(s) | 371, 616, 1078, 1379 |
| MluNI | TGGCCA | 2 cut(s) | 610, 1316 |
| Mly113I | GGCGCC | 1 cut(s) | 441 |
| MlyI | GAGTC | 4 cut(s) | 837, 958, 1067, 1564 |
| MmeI | TCCRAC | 1 cut(s) | 1650 |
| Mox20I | TGGCCA | 2 cut(s) | 610, 1316 |
| MscI | TGGCCA | 2 cut(s) | 610, 1316 |
| MseI | TTAA | 5 cut(s) | 480, 761, 984, 1089, 1599 |
| MslI | CAYNNNNRTG | 2 cut(s) | 956, 1565 |
| Msp20I | TGGCCA | 2 cut(s) | 610, 1316 |
| MspI | CCGG | 6 cut(s) | 125, 156, 256, 438, 444, 741 |
| MspR9I | CCNGG | 5 cut(s) | 44, 387, 741, 1473, 1518 |
| MunI | CAATTG | 1 cut(s) | 1379 |
| MvaI | CCWGG | 4 cut(s) | 44, 387, 1473, 1518 |
| MvnI | CGCG | 2 cut(s) | 343, 345 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 130, 287, 296, 929, 1175 |
| NarI | GGCGCC | 1 cut(s) | 441 |
| NciI | CCSGG | 1 cut(s) | 741 |
| NcoI | CCATGG | 3 cut(s) | 24, 908, 1204 |
| NdeI | CATATG | 1 cut(s) | 971 |
| NdeII | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| NlaIII | CATG | 9 cut(s) | 28, 325, 912, 955, 1193, 1208, 1356, 1618, 1645 |
| NlaIV | GGNNCC | 7 cut(s) | 200, 208, 254, 361, 391, 442, 1674 |
| NmeAIII | GCCGAG | 1 cut(s) | 266 |
| NmuCI | GTSAC | 3 cut(s) | 469, 679, 1607 |
| NspI | RCATGY | 1 cut(s) | 1356 |
| PasI | CCCWGGG | 1 cut(s) | 386 |
| PfeI | GAWTC | 1 cut(s) | 20 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 322 |
| PkrI | GCNGC | 5 cut(s) | 14, 328, 598, 934, 1168 |
| PleI | GAGTC | 4 cut(s) | 837, 958, 1067, 1564 |
| PluTI | GGCGCC | 1 cut(s) | 444 |
| PpsI | GAGTC | 4 cut(s) | 837, 958, 1067, 1564 |
| Ppu21I | YACGTR | 1 cut(s) | 686 |
| PpuMI | RGGWCCY | 2 cut(s) | 199, 1024 |
| PshAI | GACNNNNGTC | 1 cut(s) | 344 |
| PsiI | TTATAA | 1 cut(s) | 533 |
| Psp5II | RGGWCCY | 2 cut(s) | 199, 1024 |
| Psp6I | CCWGG | 4 cut(s) | 42, 385, 1471, 1516 |
| PspFI | CCCAGC | 3 cut(s) | 558, 563, 810 |
| PspGI | CCWGG | 4 cut(s) | 42, 385, 1471, 1516 |
| PspN4I | GGNNCC | 7 cut(s) | 200, 208, 254, 361, 391, 442, 1674 |
| PspOMI | GGGCCC | 1 cut(s) | 389 |
| PspPPI | RGGWCCY | 2 cut(s) | 199, 1024 |
| PsuI | RGATCY | 1 cut(s) | 777 |
| RsaI | GTAC | 5 cut(s) | 254, 581, 1286, 1496, 1508 |
| RsaNI | GTAC | 5 cut(s) | 253, 580, 1285, 1495, 1507 |
| RseI | CAYNNNNRTG | 2 cut(s) | 956, 1565 |
| Rsr2I | CGGWCCG | 1 cut(s) | 258 |
| RsrII | CGGWCCG | 1 cut(s) | 258 |
| SaqAI | TTAA | 5 cut(s) | 480, 761, 984, 1089, 1599 |
| SatI | GCNGC | 5 cut(s) | 13, 327, 597, 933, 1167 |
| Sau3AI | GATC | 4 cut(s) | 333, 777, 816, 1369 |
| SchI | GAGTC | 4 cut(s) | 837, 958, 1067, 1564 |
| ScrFI | CCNGG | 5 cut(s) | 44, 387, 741, 1473, 1518 |
| SduI | GDGCHC | 4 cut(s) | 309, 393, 646, 840 |
| SfcI | CTRYAG | 1 cut(s) | 715 |
| SfoI | GGCGCC | 1 cut(s) | 442 |
| SgrAI | CRCCGGYG | 1 cut(s) | 124 |
| SinI | GGWCC | 6 cut(s) | 199, 258, 360, 867, 1024, 1115 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 956, 1565 |
| SmlI | CTYRAG | 1 cut(s) | 1572 |
| SmoI | CTYRAG | 1 cut(s) | 1572 |
| Sse9I | AATT | 4 cut(s) | 371, 616, 1078, 1379 |
| SsiI | CCGC | 1 cut(s) | 327 |
| SspDI | GGCGCC | 1 cut(s) | 440 |
| SspMI | CTAG | 5 cut(s) | 72, 203, 330, 1403, 1629 |
| StyD4I | CCNGG | 5 cut(s) | 42, 385, 739, 1471, 1516 |
| StyI | CCWWGG | 6 cut(s) | 24, 202, 669, 908, 1204, 1385 |
| TaaI | ACNGT | 5 cut(s) | 148, 270, 451, 475, 693 |
| TaiI | ACGT | 5 cut(s) | 402, 414, 509, 688, 990 |
| TaqI | TCGA | 2 cut(s) | 272, 588 |
| TaqII | GACCGA | 1 cut(s) | 275 |
| TasI | AATT | 4 cut(s) | 371, 616, 1078, 1379 |
| TatI | WGTACW | 1 cut(s) | 1494 |
| TauI | GCSGC | 1 cut(s) | 329 |
| TfiI | GAWTC | 1 cut(s) | 20 |
| Tru1I | TTAA | 5 cut(s) | 480, 761, 984, 1089, 1599 |
| Tru9I | TTAA | 5 cut(s) | 480, 761, 984, 1089, 1599 |
| TscAI | CASTG | 3 cut(s) | 273, 925, 1180 |
| TseFI | GTSAC | 3 cut(s) | 469, 679, 1607 |
| TseI | GCWGC | 4 cut(s) | 12, 596, 932, 1166 |
| Tsp45I | GTSAC | 3 cut(s) | 469, 679, 1607 |
| TspDTI | ATGAA | 8 cut(s) | 93, 310, 452, 700, 1178, 1630, 1631, 1644 |
| TspRI | CASTG | 3 cut(s) | 273, 925, 1180 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 322 |
| VpaK11BI | GGWCC | 6 cut(s) | 199, 258, 360, 867, 1024, 1115 |
| XapI | RAATTY | 2 cut(s) | 371, 616 |
| XbaI | TCTAGA | 1 cut(s) | 71 |
| XceI | RCATGY | 1 cut(s) | 1356 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 600 |
| XmaJI | CCTAGG | 1 cut(s) | 202 |
| XmiI | GTMKAC | 3 cut(s) | 453, 688, 990 |
| XspI | CTAG | 5 cut(s) | 72, 203, 330, 1403, 1629 |