RchiOBHm_Chr7g0203341

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000042
Physical Location & Seq
Forward (+)
21053336 .. 21056128
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18199

Sequence Viewer

Length: 2124 bp
ATGGAGATTCTTGCTGCAATTGCTGGAAAACTTGCCGAGTACTCAGTTGCACCAATTGGACTCCAAGTGGGTTATCTAGCTCACTACAAAAGCAACCATCAAAAGCTGCAGACCAAATTGAAGGAATTAATTGCTGTCAGAGATGGGGTTCAACATAAGGTTGATCATGTTGAGAGAGAAGGTAAAAGAGTCGAGGCTACTGTTCTGAACTGGAAGGCAAGAGTGAATGCAATCATCACAGAGGCAGAGGAATTCCTGAAAGACGGCCGCCACGCGCAAACCGAGTGTCTTCATGGTTTTTGTCCTCATTTGGTGCTCCGTTATCGACTAAGCAGGAAATCAACAAAATTGGCGGAGGAGATTGATGAACTTGATCAAAAAAAGGAGTTCCCCAACTTTGCATATGATGTTACTCCACAAGAGGTATTTCTCGTATCTACCGGGCATTACAGTACATTTGATTCAAGGAATTCAATTGTGATGAGAGTCATGGAGGAACTGAGAAATCCTAATACAGAAATGATTCTGGTATGGGGAATCGGTGGAGTAGGGAAGACCACACTCGTGGAAGAAGTTCTTAGGAAAGCTAAGGATGACAACTTATTTGATGATGTGGTGATGGTGAGAGATGTTAAAGAGAACCCAGACCTTGAAAAAATCCAAAAAGAAATTGCCACAAAGTTAGGTATGAGCATCAACGAAAATCAGACTCTCGCTGAAAGAGCCCCCTCTCTGTGTACTAGGATAAAAGAAAAAAGGACTCTTGTAGTTTTGGATGACGTTTGGGAAAAAATTGATCTGGTGGCTGTCGGAGTTCCCCGCCTGGCTACCTGTAAAGTAGTGCTGACATGTAGAAGCCGAAAGGAATTATCCTTGGATAGGCGTACACAAACAGATATTTCACTGGATGTTTTAAATGAAGAGGAAACCTGGAGTCTATTTGAGAAGATGGCTGGTGATGTTGTCAAAGATAGCCGCATAAGAAGCATAGCAATTGAAATAGCCAAAAAATGTGGAGGTTTGCCGGTCTTGATCGTTACGGTTGCAAGAGCTCTAAAAGACAGAAACAAGTTGCATCATTGGAATGACACCTTGAGACGTCTTAGAGGCTTTGACAACAAAGAATTGATGGAAAAAACATACTCAGCTCTGGAGTGGAGTTACGATCAGTTGGAAGATAAAGAGCTTAAGCCTTTGTTCTTGCTTTGTGGGATTATTGTAGTTAAGAACCATATTTATTTGGCAGACTTGTTGAAATATGGTTTTGGTTTGGATTTGATTAAAAATGTCAATAAAATAGAAGATGCACGAGAGGCATTGTATACACTCGTTGACAAGCTCAAAGACTCTTGCTTGTTGCTGGACAGTGATATCTATATGCATGTTAGAATGCATGATCTCGTATGTGAGGTTGCTACCCAGATTGCATACAGAGAACACCACGTCTTATCTGTTGGATATGGTGGTGAATTGAAAGAATGGCCAGAGAAAGATTTCTTTGAAAGGTGCAGTAAGATGTCTTTAAAATCCAGCAATATTCCCATGCTTTCTGAAGTACCATGGAAATGCCCGAAAATAGAGATGTTTCATTTGTATAGAAAAGCAGGCCTGGGTGATGCATGGGTGGGAATCCCAGCCAACTTTTTTAGTGAAATGGAGAAACTGAAAGTGTTGGGTTTAACAAAAGTGCATGTGGTGTCACTATTCTCATCTCTTCAGTTCTTGAAGAATCTTCAGACATTGTGTTTAGAAGAATGCCTGCTGGGGGAAGAGAATCAAGAGATAGCTCTGGTTGGACATCTATGTAACTTGGAGATTCTTAGCTTTGCGCGGTCCAACATCAAACAGCTACCTGAAGAAATAGGGCAATTGATTCGATTGAGATGGTTGGATTTGAGTGAATGTGATGAACTTGAAGTGATTTCACCTGGTGTTATTTCAAGGTTGGAAAGACTAGAAGACTTATCACTGAGAAACGTCTATCTCAAATGGGAGGCTGAAAGGGGAGGAAGTAATGCTAGTCTTTTAGAGCTAAAAGACTTGTCTCAACTAACTGCATTGGAGATATATATTGAAGATGCAAATATTCTTCCATCATACTTGTTCTCCAGTAGAGAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

707

Amino Acids

80.9

Weight (kDa)

5.82

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 159 - 319 5.8e-28 NB-ARC domain
LRR_14 PF23598 598 - 693 7.7e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1102
AccI GTMKAC 1 cut(s) 1322
AccII CGCG 2 cut(s) 275, 1831
AciI CCGC 5 cut(s) 268, 353, 820, 976, 1831
AcoI YGGCCR 2 cut(s) 265, 1481
AcsI RAATTY 2 cut(s) 251, 469
AcuI CTGAAG 4 cut(s) 1572, 1700, 1718, 1875
AcyI GRCGYC 1 cut(s) 1099
AdeI CACNNNGTG 1 cut(s) 1931
AfaI GTAC 5 cut(s) 41, 454, 739, 886, 1557
AfiI CCNNNNNNNGG 2 cut(s) 879, 1765
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 1 cut(s) 848
AjiI CACGTC 1 cut(s) 1444
AjnI CCWGG 4 cut(s) 822, 929, 1608, 1927
AleI CACNNNNGTG 1 cut(s) 563
Alw21I GWGCWC 2 cut(s) 318, 1054
Alw26I GTCTC 2 cut(s) 1090, 2049
AoxI GGCC 3 cut(s) 265, 1481, 1606
ApeKI GCWGC 2 cut(s) 14, 106
ApoI RAATTY 2 cut(s) 251, 469
ArsI GACNNNNNNTTYG 4 cut(s) 271, 303, 587, 619
AseI ATTAAT 1 cut(s) 128
Asp700I GAANNNNTTC 3 cut(s) 522, 573, 1493
AspLEI GCGC 2 cut(s) 277, 1831
AspS9I GGNCC 1 cut(s) 1833
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 6 cut(s) 628, 634, 968, 1478, 1625, 1917
AvaII GGWCC 1 cut(s) 1833
BalI TGGCCA 1 cut(s) 1483
BanII GRGCYC 2 cut(s) 727, 1054
BauI CACGAG 2 cut(s) 563, 1308
BbsI GAAGAC 3 cut(s) 281, 560, 1965
Bbv12I GWGCWC 2 cut(s) 318, 1054
BbvI GCAGC 1 cut(s) 93
BccI CCATC 7 cut(s) 105, 137, 613, 943, 1123, 1878, 2101
BceAI ACGGC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 1856, 1890
BciT130I CCWGG 4 cut(s) 824, 931, 1610, 1929
BclI TGATCA 2 cut(s) 163, 373
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 1090, 2049
BfaI CTAG 4 cut(s) 77, 741, 1955, 2019
BfmI CTRYAG 1 cut(s) 107
BfrI CTTAAG 1 cut(s) 1187
BisI GCNGC 4 cut(s) 15, 107, 268, 976
BlsI GCNGC 4 cut(s) 16, 108, 269, 977
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 5 cut(s) 442, 824, 931, 1610, 1929
Bme18I GGWCC 1 cut(s) 1833
BmgBI CACGTC 1 cut(s) 1444
BmgT120I GGNCC 1 cut(s) 1833
BmrFI CCNGG 5 cut(s) 442, 824, 931, 1610, 1929
BmsI GCATC 5 cut(s) 702, 1084, 1294, 1606, 2068
BpiI GAAGAC 3 cut(s) 281, 560, 1965
BpmI CTGGAG 3 cut(s) 952, 1172, 2092
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 1114
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 1099
BsaJI CCNNGG 3 cut(s) 873, 1559, 1609
BsaXI ACNNNNNCTCC 2 cut(s) 2090, 2120
Bsc4I CCNNNNNNNGG 2 cut(s) 879, 1765
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 3 cut(s) 215, 909, 2109
BseBI CCWGG 4 cut(s) 824, 931, 1610, 1929
BseDI CCNNGG 3 cut(s) 873, 1559, 1609
BseGI GGATG 3 cut(s) 598, 781, 913
BseLI CCNNNNNNNGG 2 cut(s) 879, 1765
BseMII CTCAG 4 cut(s) 57, 491, 1158, 1961
BseNI ACTGG 3 cut(s) 215, 909, 2109
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 93
BseYI CCCAGC 2 cut(s) 1633, 1762
BsgI GTGCAG 1 cut(s) 1528
Bsh1236I CGCG 2 cut(s) 275, 1831
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 267, 1483, 1608
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 318, 1054
BsiSI CCGG 2 cut(s) 441, 1025
BslI CCNNNNNNNGG 2 cut(s) 879, 1765
BsmAI GTCTC 2 cut(s) 1090, 2049
BsmBI CGTCTC 1 cut(s) 1090
BsmI GAATGC 3 cut(s) 232, 1395, 1760
BsnI GGCC 3 cut(s) 267, 1483, 1608
Bsp1286I GDGCHC 3 cut(s) 318, 727, 1054
Bsp143I GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
Bsp19I CCATGG 1 cut(s) 1559
BspACI CCGC 5 cut(s) 268, 353, 820, 976, 1831
BspANI GGCC 3 cut(s) 267, 1483, 1608
BspCNI CTCAG 4 cut(s) 56, 492, 1157, 1962
BspFNI CGCG 2 cut(s) 275, 1831
BspMAI CTGCAG 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 1187
BsrFI RCCGGY 1 cut(s) 1024
BsrI ACTGG 3 cut(s) 215, 909, 2109
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 3 cut(s) 873, 1559, 1609
BssMI GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
BssNAI GTATAC 1 cut(s) 1323
BssNI GRCGYC 1 cut(s) 1099
BssSI CACGAG 2 cut(s) 563, 1308
BssT1I CCWWGG 2 cut(s) 873, 1559
Bst1107I GTATAC 1 cut(s) 1323
Bst2BI CACGAG 2 cut(s) 563, 1308
Bst2UI CCWGG 4 cut(s) 824, 931, 1610, 1929
Bst4CI ACNGT 4 cut(s) 202, 452, 1042, 1367
Bst6I CTCTTC 3 cut(s) 915, 1719, 1764
BstACI GRCGYC 1 cut(s) 1099
BstAFI CTTAAG 1 cut(s) 1187
BstC8I GCNNGC 2 cut(s) 1606, 1760
BstDEI CTNAG 9 cut(s) 43, 329, 500, 578, 588, 1103, 1144, 1820, 1970
BstDSI CCRYGG 1 cut(s) 1559
BstENI CCTNNNNNAGG 1 cut(s) 877
BstF5I GGATG 3 cut(s) 598, 781, 913
BstFNI CGCG 2 cut(s) 275, 1831
BstHHI GCGC 2 cut(s) 277, 1831
BstKTI GATC 6 cut(s) 166, 376, 799, 1035, 1168, 1399
BstMAI GTCTC 2 cut(s) 1090, 2049
BstMBI GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 4 cut(s) 20, 722, 984, 1313
BstNI CCWGG 4 cut(s) 824, 931, 1610, 1929
BstNSI RCATGY 3 cut(s) 852, 1385, 1694
BstSCI CCNGG 5 cut(s) 440, 822, 929, 1608, 1927
BstSFI CTRYAG 1 cut(s) 107
BstUI CGCG 2 cut(s) 275, 1831
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 3 cut(s) 281, 560, 1965
BstXI CCANNNNNNTGG 1 cut(s) 565
BstZ17I GTATAC 1 cut(s) 1323
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 3 cut(s) 267, 1483, 1608
BtgI CCRYGG 1 cut(s) 1559
BtrI CACGTC 1 cut(s) 1444
BtsCI GGATG 3 cut(s) 598, 781, 913
BtsIMutI CAGTG 3 cut(s) 902, 1372, 1967
Cac8I GCNNGC 2 cut(s) 1606, 1760
CfoI GCGC 2 cut(s) 277, 1831
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 1 cut(s) 1833
CsiI ACCWGGT 1 cut(s) 1927
Csp6I GTAC 5 cut(s) 40, 453, 738, 885, 1556
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviQI GTAC 5 cut(s) 40, 453, 738, 885, 1556
DdeI CTNAG 9 cut(s) 43, 329, 500, 578, 588, 1103, 1144, 1820, 1970
DpnI GATC 6 cut(s) 165, 375, 798, 1034, 1167, 1398
DpnII GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
DraI TTTAAA 2 cut(s) 915, 1524
DraIII CACNNNGTG 1 cut(s) 1931
EaeI YGGCCR 2 cut(s) 265, 1481
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 3 cut(s) 915, 1719, 1764
EarI CTCTTC 3 cut(s) 915, 1719, 1764
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 1052
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 873, 1559
Eco147I AGGCCT 1 cut(s) 1608
Eco24I GRGCYC 2 cut(s) 727, 1054
Eco32I GATATC 1 cut(s) 1372
Eco47I GGWCC 1 cut(s) 1833
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 1052
Eco57I CTGAAG 4 cut(s) 1572, 1700, 1718, 1875
EcoICRI GAGCTC 1 cut(s) 1052
EcoNI CCTNNNNNAGG 1 cut(s) 877
EcoRI GAATTC 2 cut(s) 251, 469
EcoRII CCWGG 4 cut(s) 822, 929, 1608, 1927
EcoRV GATATC 1 cut(s) 1372
EcoT14I CCWWGG 2 cut(s) 873, 1559
EcoT22I ATGCAT 3 cut(s) 1383, 1395, 1621
EcoT38I GRGCYC 2 cut(s) 727, 1054
ErhI CCWWGG 2 cut(s) 873, 1559
Esp3I CGTCTC 1 cut(s) 1090
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FauI CCCGC 1 cut(s) 827
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 2 cut(s) 163, 373
FblI GTMKAC 1 cut(s) 1322
Fnu4HI GCNGC 4 cut(s) 15, 107, 268, 976
FokI GGATG 3 cut(s) 605, 788, 920
FriOI GRGCYC 2 cut(s) 727, 1054
Fsp4HI GCNGC 4 cut(s) 15, 107, 268, 976
FspBI CTAG 4 cut(s) 77, 741, 1955, 2019
GlaI GCGC 2 cut(s) 276, 1830
GluI GCNGC 4 cut(s) 15, 107, 268, 976
GsaI CCCAGC 2 cut(s) 1637, 1766
GsuI CTGGAG 3 cut(s) 952, 1172, 2092
HaeIII GGCC 3 cut(s) 267, 1483, 1608
HapII CCGG 2 cut(s) 441, 1025
HhaI GCGC 2 cut(s) 277, 1831
Hin1I GRCGYC 1 cut(s) 1099
Hin6I GCGC 2 cut(s) 275, 1829
HinP1I GCGC 2 cut(s) 275, 1829
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HpaII CCGG 2 cut(s) 441, 1025
HphI GGTGA 6 cut(s) 628, 634, 968, 1478, 1625, 1917
Hpy166II GTNNAC 4 cut(s) 738, 887, 1323, 1333
Hpy188I TCNGA 6 cut(s) 140, 207, 708, 812, 1552, 1737
Hpy188III TCNNGA 5 cut(s) 256, 1030, 1151, 1723, 1778
Hpy8I GTNNAC 4 cut(s) 738, 887, 1323, 1333
HpyAV CCTTC 3 cut(s) 115, 173, 208
HpyCH4III ACNGT 4 cut(s) 202, 452, 1042, 1367
HpyCH4IV ACGT 4 cut(s) 780, 1099, 1443, 1977
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 722, 984, 1313
HpyF3I CTNAG 9 cut(s) 43, 329, 500, 578, 588, 1103, 1144, 1820, 1970
HpySE526I ACGT 4 cut(s) 780, 1099, 1443, 1977
Hsp92I GRCGYC 1 cut(s) 1099
HspAI GCGC 2 cut(s) 275, 1829
Ksp22I TGATCA 2 cut(s) 163, 373
Kzo9I GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 5 cut(s) 702, 1084, 1294, 1606, 2068
MabI ACCWGGT 1 cut(s) 1927
MaeI CTAG 4 cut(s) 77, 741, 1955, 2019
MaeII ACGT 4 cut(s) 780, 1099, 1443, 1977
MaeIII GTNAC 5 cut(s) 409, 1036, 1160, 1698, 1805
MalI GATC 6 cut(s) 165, 375, 798, 1034, 1167, 1398
MboI GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
MfeI CAATTG 5 cut(s) 18, 54, 474, 993, 1868
MhlI GDGCHC 3 cut(s) 318, 727, 1054
MlsI TGGCCA 1 cut(s) 1483
MluNI TGGCCA 1 cut(s) 1483
MlyI GAGTC 7 cut(s) 54, 198, 495, 703, 754, 943, 1340
MmeI TCCRAC 7 cut(s) 790, 1152, 1435, 1774, 1860, 1869, 1926
Mox20I TGGCCA 1 cut(s) 1483
Mph1103I ATGCAT 3 cut(s) 1383, 1395, 1621
MroXI GAANNNNTTC 3 cut(s) 522, 573, 1493
MscI TGGCCA 1 cut(s) 1483
MseI TTAA 9 cut(s) 128, 633, 914, 1188, 1224, 1281, 1523, 1679, 2122
MslI CAYNNNNRTG 3 cut(s) 563, 1083, 1564
Msp20I TGGCCA 1 cut(s) 1483
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 2 cut(s) 441, 1025
MspR9I CCNGG 5 cut(s) 442, 824, 931, 1610, 1929
MunI CAATTG 5 cut(s) 18, 54, 474, 993, 1868
Mva1269I GAATGC 3 cut(s) 232, 1395, 1760
MvaI CCWGG 4 cut(s) 824, 931, 1610, 1929
MvnI CGCG 2 cut(s) 275, 1831
MwoI GCNNNNNNNGC 4 cut(s) 20, 722, 984, 1313
NciI CCSGG 1 cut(s) 442
NcoI CCATGG 1 cut(s) 1559
NdeI CATATG 1 cut(s) 403
NdeII GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 1698
NsiI ATGCAT 3 cut(s) 1383, 1395, 1621
NspI RCATGY 3 cut(s) 852, 1385, 1694
OliI CACNNNNGTG 1 cut(s) 563
PceI AGGCCT 1 cut(s) 1608
PciI ACATGT 1 cut(s) 848
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 3 cut(s) 232, 1395, 1760
PdmI GAANNNNTTC 3 cut(s) 522, 573, 1493
PfeI GAWTC 9 cut(s) 7, 461, 523, 537, 1629, 1729, 1774, 1816, 1873
PkrI GCNGC 4 cut(s) 16, 108, 269, 977
PleI GAGTC 7 cut(s) 54, 197, 494, 703, 754, 942, 1340
PpsI GAGTC 7 cut(s) 54, 197, 494, 703, 754, 942, 1340
PscI ACATGT 1 cut(s) 848
PshBI ATTAAT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 1054
Psp6I CCWGG 4 cut(s) 822, 929, 1608, 1927
PspFI CCCAGC 2 cut(s) 1633, 1762
PspGI CCWGG 4 cut(s) 822, 929, 1608, 1927
PspPI GGNCC 1 cut(s) 1833
PstI CTGCAG 1 cut(s) 111
RsaI GTAC 5 cut(s) 41, 454, 739, 886, 1557
RsaNI GTAC 5 cut(s) 40, 453, 738, 885, 1556
RseI CAYNNNNRTG 3 cut(s) 563, 1083, 1564
SacI GAGCTC 1 cut(s) 1054
SaqAI TTAA 9 cut(s) 128, 633, 914, 1188, 1224, 1281, 1523, 1679, 2122
SatI GCNGC 4 cut(s) 15, 107, 268, 976
Sau3AI GATC 6 cut(s) 163, 373, 796, 1032, 1165, 1396
Sau96I GGNCC 1 cut(s) 1833
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 7 cut(s) 54, 198, 495, 703, 754, 943, 1340
ScrFI CCNGG 5 cut(s) 442, 824, 931, 1610, 1929
SduI GDGCHC 3 cut(s) 318, 727, 1054
SexAI ACCWGGT 1 cut(s) 1927
SfaNI GCATC 5 cut(s) 702, 1084, 1294, 1606, 2068
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 1833
SmiMI CAYNNNNRTG 3 cut(s) 563, 1083, 1564
SmlI CTYRAG 2 cut(s) 1093, 1187
SmoI CTYRAG 2 cut(s) 1093, 1187
SseBI AGGCCT 1 cut(s) 1608
SsiI CCGC 5 cut(s) 268, 353, 820, 976, 1831
SspI AATATT 2 cut(s) 1537, 2086
SspMI CTAG 4 cut(s) 77, 741, 1955, 2019
SstI GAGCTC 1 cut(s) 1054
StuI AGGCCT 1 cut(s) 1608
StyD4I CCNGG 5 cut(s) 440, 822, 929, 1608, 1927
StyI CCWWGG 2 cut(s) 873, 1559
TaaI ACNGT 4 cut(s) 202, 452, 1042, 1367
TaiI ACGT 4 cut(s) 783, 1102, 1446, 1980
TaqI TCGA 3 cut(s) 192, 325, 1876
TatI WGTACW 3 cut(s) 39, 452, 737
TauI GCSGC 2 cut(s) 270, 978
TfiI GAWTC 9 cut(s) 7, 461, 523, 537, 1629, 1729, 1774, 1816, 1873
Tru1I TTAA 9 cut(s) 128, 633, 914, 1188, 1224, 1281, 1523, 1679, 2122
Tru9I TTAA 9 cut(s) 128, 633, 914, 1188, 1224, 1281, 1523, 1679, 2122
TscAI CASTG 3 cut(s) 909, 1372, 1974
TseFI GTSAC 1 cut(s) 1698
TseI GCWGC 2 cut(s) 14, 106
Tsp45I GTSAC 1 cut(s) 1698
TspDTI ATGAA 5 cut(s) 281, 381, 933, 1577, 1923
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 3 cut(s) 909, 1372, 1974
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 1 cut(s) 1833
VspI ATTAAT 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 877
XapI RAATTY 2 cut(s) 251, 469
XceI RCATGY 3 cut(s) 852, 1385, 1694
XmiI GTMKAC 1 cut(s) 1322
XmnI GAANNNNTTC 3 cut(s) 522, 573, 1493
XspI CTAG 4 cut(s) 77, 741, 1955, 2019
ZraI GACGTC 1 cut(s) 1100
ZrmI AGTACT 1 cut(s) 41
Zsp2I ATGCAT 3 cut(s) 1383, 1395, 1621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.