RLG00000009399

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
52278951 .. 52284487
5537 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009399

Sequence Viewer

Length: 3120 bp
ATGTGGTTTCTTGCTGCAATTACTGGAGTTGTTGGAAAGATTGCCGAGTTCACAGTTCCACCAGTTATACGCCAAGTGGGTTATGTAATCCACTACAACAAGAACCTCAAAAATCTAGAGAGTCAAGCAGATGACTTGGGTGCTGCCAGTGAAAGCATGAAGCGTGCTGTTGAAACAGAGGAAAGAAAAGGTAGAGAAATTAAAGCAAGTATCCAAAACTGGCTGACTGAAGTGGATGACATGACTAAAAAAGCAAACAATTTCTTGAAAGATGGACAGCATGCAGAGACTAGATGTCTCCGTGGCTTTTGTCCTAATCTAAAGCTTCGCCATTATCGCAGCAGGGAATCAACAAGATTGGTTAAGGAAGTTGCTAAGCTTTGTGGGAAAAAGGATTTGGGCGATATTGCATACGATGTCAAACCACAGGAGGTGTGCAGCATACCTGCTAAAGATTACCAGGCCTTTGGTTCAAGGAATTTAGTGGCGAAGGAAATCATGAATGAACTGAAACAATCTGATGACGACATAATTGGGGTCTACGGTATTGGGGGTGTGGGGAAGACAACACTTGCTAAAGAAGTTTATCGACAAGCTATAGAAGATAAAACGTTATTTGATGATGTTGTTATAGTACCAGATGTAAAAAAGATTCCAGATTTGGAAGGAATTCAAAAAAGAATTGCTGAAAAGTTGGGAATGGAATTTCTCGGAGATGAGACTACAGATAGAAGAGCTAGTCGTCTTTGTCATAGGATAAAAGACAAGAAAGTTCTGGTAATTTTGGATGACATACAGGAAAAAATTGATTTGGAGATTGTGGGACTTCCACGGGTGTCCAATTGTAAAGTATTGTTGACATCTAGAACTAGAGAATTATTATCGGTTGAGATGCACTCAAAAAAGGAGTTTAAACTTGACCTCCTAAATGCAGAAGAAAACTGGAGTTTATTTGCGAAGATGGCAGGTGATTTTGTTCAAAAGTCTGACATACGAGAAGTAGCAACAGAAGTGGCCAAAAAGTGTGGAGGCTTGCCGGTTTTAGTGGTAACAGTTGCAAGCGCCCTGAAGAATAGAAGTACAGTACAAGCTTGGAAAGATGCCTTGCGACGCTTAAACAAATTTGAGAAAGAAGGATTCACGGAAAAAGCATACTTGGCTCTGGAGTGGAGTTACGAGCAATTGGATGATGAGGAACTTAAGCCATTGCTCTTGCTATCTGGAATTATGAGGGATTACTCCATGAATCTTCTTGACTTGCTGAAATACAGTATGGGCTTAGGTTTGATTAAAAACGTGGATACAATGGAAGAAGCACAGAATGCACTGCATTCACTAGTGGAAAAACTTATAGATTCTTGTCTATTGCTAGAGGATGGTGATAATAATAAATATTTTAGAATGCATGATCTTGTTCATGAAGTTGTAAACCGGATTGCCTCGCGAAAGCAACATGTCTTCAAAGTTAGGTATCCCAACTTAACATGGTTGGCGGTGAATGAACTCGATGGTTTAACATTCTTGTTATCATCTTCAATGGCTAGAAGCCTTGCACAACTCAAACGTCTTCAGGTATCAGGATGTCAAATAATGGAAGAGATAGTATCAATAGAAGAATCTGATGAAGAAATTGTAGACAAGTTCTTTTGCCAGCTACAAATTCTGGAGCTAAAAGACCTTCCAAATCTCACTAAATTTTGCTCAAGAAACCATAGTGAACTTTCAAATCTATCATTTGGGATACAACACTTTCTTTTTGACAATAAGGTAGAGTTTCCAAACTTGAAGAAGTTATCCATTGATGGCCTAGCAAAGTTAACGACAATATGGAACAATCAGTTTTCTCTAGAGAGTTCAAAAAATCTAGAAACAATAGAAATTGTTTCATGTGACAGTTTGAAAAGTATATTTTCACTAGAATCAGTTGCAACTCAACTGAGATCTTGTGACTGTCAAAATCTAGAATCAGTTGAAATTGATTCTTGTGAGAATTTGAAAAACATTTTCCCTGTTACAGTGGCTAGAAATCTTCGACAGTTAACAAGGCTGATAGTGAGGAACTGTGGAGTGGAGGAAATCATTGCAAGAGAGGAGGGACTACAAACAACACCTAAGTTTGTGTTTCCAAAAGTAACAAAAGTGATTTTTGGGAATATGTCCCAACTCACGAATTTCTACCCAGGGATGCATGTGTCCGTCTGGCCATCACTTAATGAGTTGAGGGTGGTACAATGTGCTAAAGTCAAAGTGTTTGCCGAGGAAATCTTAAATTTTCAAGGATATAATGAGTTGGAACGTCTCAGTGTTCTTATCCCGCAGTCTCTCTTTTTAATTGAGAAGGATTCATTTCCCAAATTGGAATGTTTGAGCGTGAATACAATGGAGTTTTCGAATGGTCCACTCCCAGCAGCAGCGCAGTTGTTTAGCAAACTAAAGTTTCTTGGTGTTTGTTGTCCAGAGTCCATATCAGCTGTTTTCCTTGACAAATTACTCGACCCAGAAGGAAACAGTGTGGTTCGGATTGGGACCCAACAGCAACAGCAGCTCCTACATTTAAAAGAGTTGTGGCTTATTGGAATGGAGAAGCTGATGCATCTAGGATTGGAGGATGAGGAGGATAACTCACAATCAGCCCTCCGCATCCCAAATTTTCCAAACCTGGAAATTCTAGGCTTGTATGCTTGTCACTGCTTAAGGAATCTGAGATCATCCGCAATATCCTTCAACAATCTAACAACTTTGCTAGTAAATGCTTGCAATGGATTGAAATACTTGATAACTTGCCCCATGGCCAAGAGTTTGACGCAACTCACGAAACTGGAAGTTGAGGGGTGCCCAAGACTGGTGGAAATAGTTGCAAGCAATGAAGATGCCGATACAAGAAATGAGATTACATTCAGGCGGTTGAAACATTTGAAACTTAATAAGCTACCAAGACTGCAAGGGTTTTGCTCCGGAAATTGCATTGCTAAATTCCCGTCCTTGGAAACTTTGACCATGAGCAACCGCCTCAAGTTGAAGATTTTCACAGCTCATGACCAAACGCTACAGCTAACAAACGAAGAGGAAGACACAGATGTCGATAGTTGGGAGGCGCAGCTGACTGCTGAGTGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1040

Amino Acids

117.72

Weight (kDa)

5.85

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 164 - 323 1.9e-28 NB-ARC domain
LRR_RPS2 PF23247 472 - 576 7.1e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 591 - 647 2.4e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 650 - 689 3.5e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 776 - 902 1.7e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 902 - 1007 1.6e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 956
AasI GACNNNNNNGTC 1 cut(s) 3077
Acc36I ACCTGC 2 cut(s) 454, 956
AccB1I GGYRCC 1 cut(s) 2832
AccI GTMKAC 2 cut(s) 540, 1635
AccII CGCG 1 cut(s) 1444
AccIII TCCGGA 1 cut(s) 2954
AciI CCGC 6 cut(s) 1493, 2315, 2638, 2712, 2902, 3007
AclI AACGTT 1 cut(s) 611
AcoI YGGCCR 3 cut(s) 1014, 2201, 2790
AcuI CTGAAG 3 cut(s) 249, 1088, 1553
AfaI GTAC 4 cut(s) 636, 1081, 1086, 2229
AfiI CCNNNNNNNGG 2 cut(s) 2842, 2983
AflII CTTAAG 2 cut(s) 1199, 2692
AflIII ACRYGT 1 cut(s) 1453
AhdI GACNNNNNGTC 1 cut(s) 294
AhlI ACTAGT 1 cut(s) 1336
AjnI CCWGG 3 cut(s) 459, 2179, 2658
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Alw21I GWGCWC 1 cut(s) 3116
Alw26I GTCTC 5 cut(s) 281, 302, 713, 2303, 2325
Aor13HI TCCGGA 1 cut(s) 2954
AoxI GGCC 5 cut(s) 462, 1014, 1804, 2201, 2790
ApeKI GCWGC 8 cut(s) 14, 143, 339, 438, 2408, 2411, 2542, 3097
Asp700I GAANNNNTTC 2 cut(s) 669, 3023
AspLEI GCGC 3 cut(s) 1064, 2416, 3097
AspS9I GGNCC 2 cut(s) 2396, 2526
AsuHPI GGTGA 3 cut(s) 980, 1391, 1507
AsuII TTCGAA 1 cut(s) 2390
AvaII GGWCC 2 cut(s) 2396, 2526
BaeGI GKGCMC 1 cut(s) 2837
BalI TGGCCA 3 cut(s) 1016, 2203, 2792
BanI GGYRCC 1 cut(s) 2832
BbsI GAAGAC 4 cut(s) 569, 1450, 1559, 3075
Bbv12I GWGCWC 1 cut(s) 3116
BbvI GCAGC 7 cut(s) 130, 351, 450, 2420, 2423, 2554, 3109
BccI CCATC 6 cut(s) 266, 955, 1370, 1502, 1796, 2212
BciT130I CCWGG 3 cut(s) 461, 2181, 2660
BciVI GTATCC 4 cut(s) 221, 1294, 1482, 1734
BcoDI GTCTC 5 cut(s) 281, 302, 713, 2303, 2325
BcuI ACTAGT 1 cut(s) 1336
BfmI CTRYAG 3 cut(s) 597, 723, 3047
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 2 cut(s) 1199, 2692
BfuAI ACCTGC 2 cut(s) 454, 956
BfuI GTATCC 4 cut(s) 221, 1294, 1482, 1734
BglII AGATCT 1 cut(s) 1940
BisI GCNGC 8 cut(s) 15, 144, 340, 439, 2409, 2412, 2543, 3098
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 8 cut(s) 16, 145, 341, 440, 2410, 2413, 2544, 3099
Bme1390I CCNGG 3 cut(s) 461, 2181, 2660
Bme18I GGWCC 2 cut(s) 2396, 2526
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 2396, 2526
BmiI GGNNCC 3 cut(s) 2527, 2528, 2834
BmrFI CCNGG 3 cut(s) 461, 2181, 2660
BmsI GCATC 7 cut(s) 882, 1090, 2175, 2580, 2602, 2649, 2860
BpiI GAAGAC 4 cut(s) 569, 1450, 1559, 3075
BplI GAGNNNNNCTC 4 cut(s) 881, 913, 2606, 2638
BpmI CTGGAG 4 cut(s) 45, 964, 1184, 1685
Bpu10I CCTNAGC 1 cut(s) 1279
Bpu1102I GCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 2390
BpuEI CTTGAG 2 cut(s) 1687, 2996
BsaJI CCNNGG 7 cut(s) 301, 830, 2179, 2180, 2256, 2787, 2982
BsaWI WCCGGW 2 cut(s) 1431, 2954
BsaXI ACNNNNNCTCC 4 cut(s) 906, 936, 2529, 2559
Bsc4I CCNNNNNNNGG 2 cut(s) 2842, 2983
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 7 cut(s) 28, 62, 147, 224, 947, 2823, 2847
Bse3DI GCAATG 5 cut(s) 1205, 2079, 2764, 2869, 2964
BseAI TCCGGA 1 cut(s) 2954
BseBI CCWGG 3 cut(s) 461, 2181, 2660
BseDI CCNNGG 7 cut(s) 301, 830, 2179, 2180, 2256, 2787, 2982
BseGI GGATG 9 cut(s) 241, 793, 1192, 1381, 1586, 2190, 2614, 2640, 2708
BseLI CCNNNNNNNGG 2 cut(s) 2842, 2983
BseMI GCAATG 5 cut(s) 1205, 2079, 2764, 2869, 2964
BseMII CTCAG 4 cut(s) 1928, 2314, 2693, 3099
BseNI ACTGG 7 cut(s) 28, 62, 147, 224, 947, 2823, 2847
BseRI GAGGAG 2 cut(s) 2105, 2627
BseSI GKGCMC 1 cut(s) 2837
BseXI GCAGC 7 cut(s) 130, 351, 450, 2420, 2423, 2554, 3109
BseYI CCCAGC 1 cut(s) 2404
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 1444
BshFI GGCC 5 cut(s) 464, 1016, 1806, 2203, 2792
BshNI GGYRCC 1 cut(s) 2832
BsiHKAI GWGCWC 1 cut(s) 3116
BsiSI CCGG 3 cut(s) 1037, 1432, 2955
BslFI GGGAC 4 cut(s) 837, 2109, 2143, 2539
BslI CCNNNNNNNGG 2 cut(s) 2842, 2983
BsmAI GTCTC 5 cut(s) 281, 302, 713, 2303, 2325
BsmBI CGTCTC 1 cut(s) 2303
BsmFI GGGAC 4 cut(s) 837, 2109, 2143, 2539
BsmI GAATGC 3 cut(s) 1327, 1330, 1407
BsnI GGCC 5 cut(s) 464, 1016, 1806, 2203, 2792
Bsp119I TTCGAA 1 cut(s) 2390
Bsp1286I GDGCHC 2 cut(s) 2837, 3116
Bsp13I TCCGGA 1 cut(s) 2954
Bsp143I GATC 3 cut(s) 1408, 1940, 2705
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 2787
Bsp68I TCGCGA 1 cut(s) 1444
BspACI CCGC 6 cut(s) 1493, 2315, 2638, 2712, 2902, 3007
BspANI GGCC 5 cut(s) 464, 1016, 1806, 2203, 2792
BspCNI CTCAG 4 cut(s) 1929, 2313, 2694, 3100
BspEI TCCGGA 1 cut(s) 2954
BspFNI CGCG 1 cut(s) 1444
BspHI TCATGA 4 cut(s) 498, 1417, 3034, 3116
BspLI GGNNCC 3 cut(s) 2527, 2528, 2834
BspMI ACCTGC 2 cut(s) 454, 956
BspQI GCTCTTC 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 2390
BspT107I GGYRCC 1 cut(s) 2832
BspTI CTTAAG 2 cut(s) 1199, 2692
BsrDI GCAATG 5 cut(s) 1205, 2079, 2764, 2869, 2964
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 7 cut(s) 28, 62, 147, 224, 947, 2823, 2847
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 7 cut(s) 301, 830, 2179, 2180, 2256, 2787, 2982
BssMI GATC 3 cut(s) 1408, 1940, 2705
BssT1I CCWWGG 2 cut(s) 2787, 2982
Bst2UI CCWGG 3 cut(s) 461, 2181, 2660
Bst6I CTCTTC 3 cut(s) 727, 1590, 3057
BstAFI CTTAAG 2 cut(s) 1199, 2692
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstBI TTCGAA 1 cut(s) 2390
BstC8I GCNNGC 7 cut(s) 165, 282, 1034, 1060, 1652, 2755, 2860
BstDEI CTNAG 7 cut(s) 375, 1279, 1937, 2112, 2300, 2702, 3108
BstDSI CCRYGG 3 cut(s) 301, 830, 2787
BstF5I GGATG 9 cut(s) 241, 793, 1192, 1381, 1586, 2190, 2614, 2640, 2708
BstFNI CGCG 1 cut(s) 1444
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 3 cut(s) 1064, 2416, 3097
BstKTI GATC 3 cut(s) 1411, 1943, 2708
BstMAI GTCTC 5 cut(s) 281, 302, 713, 2303, 2325
BstMBI GATC 3 cut(s) 1408, 1940, 2705
BstMWI GCNNNNNNNGC 5 cut(s) 336, 962, 1157, 1322, 2542
BstNI CCWGG 3 cut(s) 461, 2181, 2660
BstNSI RCATGY 3 cut(s) 284, 1457, 2192
BstSCI CCNGG 3 cut(s) 459, 2179, 2658
BstSFI CTRYAG 3 cut(s) 597, 723, 3047
BstSLI GKGCMC 1 cut(s) 2837
BstUI CGCG 1 cut(s) 1444
BstV1I GCAGC 7 cut(s) 130, 351, 450, 2420, 2423, 2554, 3109
BstV2I GAAGAC 4 cut(s) 569, 1450, 1559, 3075
BstX2I RGATCY 1 cut(s) 1940
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 1940
BsuI GTATCC 4 cut(s) 221, 1294, 1482, 1734
BsuRI GGCC 5 cut(s) 464, 1016, 1806, 2203, 2792
BtgI CCRYGG 3 cut(s) 301, 830, 2787
BtsCI GGATG 9 cut(s) 241, 793, 1192, 1381, 1586, 2190, 2614, 2640, 2708
BtsI GCAGTG 2 cut(s) 1325, 2686
BtsIMutI CAGTG 6 cut(s) 154, 1325, 2022, 2308, 2515, 2686
BtuMI TCGCGA 1 cut(s) 1444
BveI ACCTGC 2 cut(s) 454, 956
Cac8I GCNNGC 7 cut(s) 165, 282, 1034, 1060, 1652, 2755, 2860
CciI TCATGA 4 cut(s) 498, 1417, 3034, 3116
CfoI GCGC 3 cut(s) 1064, 2416, 3097
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 2396, 2526
CseI GACGC 2 cut(s) 1119, 2812
Csp6I GTAC 4 cut(s) 635, 1080, 1085, 2228
CspCI CAANNNNNGTGG 6 cut(s) 993, 1006, 1028, 1041, 2826, 2861
CviQI GTAC 4 cut(s) 635, 1080, 1085, 2228
DdeI CTNAG 7 cut(s) 375, 1279, 1937, 2112, 2300, 2702, 3108
DpnI GATC 3 cut(s) 1410, 1942, 2707
DpnII GATC 3 cut(s) 1408, 1940, 2705
DraI TTTAAA 2 cut(s) 913, 2556
DrdI GACNNNNNNGTC 1 cut(s) 3077
DriI GACNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 3077
EaeI YGGCCR 3 cut(s) 1014, 2201, 2790
Eam1104I CTCTTC 3 cut(s) 727, 1590, 3057
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 3 cut(s) 727, 1590, 3057
Eco130I CCWWGG 2 cut(s) 2787, 2982
Eco147I AGGCCT 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 2396, 2526
Eco57I CTGAAG 3 cut(s) 249, 1088, 1553
EcoO109I RGGNCCY 1 cut(s) 2526
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 3 cut(s) 459, 2179, 2658
EcoT14I CCWWGG 2 cut(s) 2787, 2982
EcoT22I ATGCAT 3 cut(s) 1407, 2190, 2595
ErhI CCWWGG 2 cut(s) 2787, 2982
Esp3I CGTCTC 1 cut(s) 2303
FaqI GGGAC 4 cut(s) 837, 2109, 2143, 2539
FauI CCCGC 1 cut(s) 2322
FblI GTMKAC 2 cut(s) 540, 1635
Fnu4HI GCNGC 8 cut(s) 15, 144, 340, 439, 2409, 2412, 2543, 3098
FokI GGATG 9 cut(s) 248, 800, 1199, 1388, 1593, 2197, 2621, 2627, 2695
Fsp4HI GCNGC 8 cut(s) 15, 144, 340, 439, 2409, 2412, 2543, 3098
GlaI GCGC 3 cut(s) 1063, 2415, 3096
GluI GCNGC 8 cut(s) 15, 144, 340, 439, 2409, 2412, 2543, 3098
GsaI CCCAGC 1 cut(s) 2408
GsuI CTGGAG 4 cut(s) 45, 964, 1184, 1685
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 5 cut(s) 464, 1016, 1806, 2203, 2792
HapII CCGG 3 cut(s) 1037, 1432, 2955
HgaI GACGC 2 cut(s) 1119, 2812
HhaI GCGC 3 cut(s) 1064, 2416, 3097
Hin6I GCGC 3 cut(s) 1062, 2414, 3095
HinP1I GCGC 3 cut(s) 1062, 2414, 3095
HincII GTYRAC 3 cut(s) 858, 1818, 2040
HindII GTYRAC 3 cut(s) 858, 1818, 2040
HindIII AAGCTT 3 cut(s) 323, 377, 1089
HpaI GTTAAC 2 cut(s) 1818, 2040
HpaII CCGG 3 cut(s) 1037, 1432, 2955
HphI GGTGA 3 cut(s) 980, 1391, 1507
Hpy166II GTNNAC 9 cut(s) 51, 541, 858, 1429, 1636, 1718, 1818, 2040, 2399
Hpy188I TCNGA 6 cut(s) 520, 713, 988, 1621, 2520, 2703
Hpy8I GTNNAC 9 cut(s) 51, 541, 858, 1429, 1636, 1718, 1818, 2040, 2399
Hpy99I CGWCG 1 cut(s) 1113
HpyAV CCTTC 7 cut(s) 484, 659, 1127, 1688, 2332, 2495, 2731
HpyCH4IV ACGT 4 cut(s) 611, 1296, 1564, 2296
HpyF10VI GCNNNNNNNGC 5 cut(s) 336, 962, 1157, 1322, 2542
HpyF3I CTNAG 7 cut(s) 375, 1279, 1937, 2112, 2300, 2702, 3108
HpySE526I ACGT 4 cut(s) 611, 1296, 1564, 2296
HspAI GCGC 3 cut(s) 1062, 2414, 3095
KflI GGGWCCC 1 cut(s) 2526
Kpn2I TCCGGA 1 cut(s) 2954
KspAI GTTAAC 2 cut(s) 1818, 2040
Kzo9I GATC 3 cut(s) 1408, 1940, 2705
LguI GCTCTTC 1 cut(s) 727
LmnI GCTCC 3 cut(s) 1666, 2550, 2957
Lsp1109I GCAGC 7 cut(s) 130, 351, 450, 2420, 2423, 2554, 3109
LweI GCATC 7 cut(s) 882, 1090, 2175, 2580, 2602, 2649, 2860
MaeII ACGT 4 cut(s) 611, 1296, 1564, 2296
MaeIII GTNAC 7 cut(s) 1048, 1172, 1889, 1946, 2011, 2131, 2684
MalI GATC 3 cut(s) 1410, 1942, 2707
MboI GATC 3 cut(s) 1408, 1940, 2705
MfeI CAATTG 2 cut(s) 841, 1181
MflI RGATCY 1 cut(s) 1940
MhlI GDGCHC 2 cut(s) 2837, 3116
MlsI TGGCCA 3 cut(s) 1016, 2203, 2792
MluNI TGGCCA 3 cut(s) 1016, 2203, 2792
MlyI GAGTC 2 cut(s) 130, 2468
MmeI TCCRAC 2 cut(s) 13, 2271
Mox20I TGGCCA 3 cut(s) 1016, 2203, 2792
Mph1103I ATGCAT 3 cut(s) 1407, 2190, 2595
MroI TCCGGA 1 cut(s) 2954
MroXI GAANNNNTTC 2 cut(s) 669, 3023
MscI TGGCCA 3 cut(s) 1016, 2203, 2792
Msp20I TGGCCA 3 cut(s) 1016, 2203, 2792
MspA1I CMGCKG 2 cut(s) 2471, 3100
MspCI CTTAAG 2 cut(s) 1199, 2692
MspI CCGG 3 cut(s) 1037, 1432, 2955
MspR9I CCNGG 3 cut(s) 461, 2181, 2660
MssI GTTTAAAC 1 cut(s) 913
MunI CAATTG 2 cut(s) 841, 1181
Mva1269I GAATGC 3 cut(s) 1327, 1330, 1407
MvaI CCWGG 3 cut(s) 461, 2181, 2660
MvnI CGCG 1 cut(s) 1444
MwoI GCNNNNNNNGC 5 cut(s) 336, 962, 1157, 1322, 2542
NcoI CCATGG 1 cut(s) 2787
NdeII GATC 3 cut(s) 1408, 1940, 2705
NlaIV GGNNCC 3 cut(s) 2527, 2528, 2834
NmeAIII GCCGAG 2 cut(s) 70, 2281
NmuCI GTSAC 3 cut(s) 1889, 1946, 2684
NruI TCGCGA 1 cut(s) 1444
NsiI ATGCAT 3 cut(s) 1407, 2190, 2595
NspI RCATGY 3 cut(s) 284, 1457, 2192
NspV TTCGAA 1 cut(s) 2390
PaeI GCATGC 1 cut(s) 284
PagI TCATGA 4 cut(s) 498, 1417, 3034, 3116
PaqCI CACCTGC 1 cut(s) 956
PasI CCCWGGG 1 cut(s) 2180
PceI AGGCCT 1 cut(s) 464
PciI ACATGT 1 cut(s) 1453
PciSI GCTCTTC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 2810
PctI GAATGC 3 cut(s) 1327, 1330, 1407
PdmI GAANNNNTTC 2 cut(s) 669, 3023
PkrI GCNGC 8 cut(s) 16, 145, 341, 440, 2410, 2413, 2544, 3099
PleI GAGTC 2 cut(s) 129, 2467
PmeI GTTTAAAC 1 cut(s) 913
PpsI GAGTC 2 cut(s) 129, 2467
PpuMI RGGWCCY 1 cut(s) 2526
PscI ACATGT 1 cut(s) 1453
Psp1406I AACGTT 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 2526
Psp6I CCWGG 3 cut(s) 459, 2179, 2658
PspFI CCCAGC 1 cut(s) 2404
PspGI CCWGG 3 cut(s) 459, 2179, 2658
PspN4I GGNNCC 3 cut(s) 2527, 2528, 2834
PspPI GGNCC 2 cut(s) 2396, 2526
PspPPI RGGWCCY 1 cut(s) 2526
PsuI RGATCY 1 cut(s) 1940
PvuII CAGCTG 2 cut(s) 2471, 3100
RruI TCGCGA 1 cut(s) 1444
RsaI GTAC 4 cut(s) 636, 1081, 1086, 2229
RsaNI GTAC 4 cut(s) 635, 1080, 1085, 2228
SapI GCTCTTC 1 cut(s) 727
SatI GCNGC 8 cut(s) 15, 144, 340, 439, 2409, 2412, 2543, 3098
Sau3AI GATC 3 cut(s) 1408, 1940, 2705
Sau96I GGNCC 2 cut(s) 2396, 2526
SchI GAGTC 2 cut(s) 130, 2468
ScrFI CCNGG 3 cut(s) 461, 2181, 2660
SduI GDGCHC 2 cut(s) 2837, 3116
SfaNI GCATC 7 cut(s) 882, 1090, 2175, 2580, 2602, 2649, 2860
SfcI CTRYAG 3 cut(s) 597, 723, 3047
SfuI TTCGAA 1 cut(s) 2390
SinI GGWCC 2 cut(s) 2396, 2526
SmlI CTYRAG 4 cut(s) 1199, 1702, 2692, 3011
SmoI CTYRAG 4 cut(s) 1199, 1702, 2692, 3011
SpeI ACTAGT 1 cut(s) 1336
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 6 cut(s) 1493, 2315, 2638, 2712, 2902, 3007
SspI AATATT 1 cut(s) 1394
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 3 cut(s) 459, 2179, 2658
StyI CCWWGG 2 cut(s) 2787, 2982
TaiI ACGT 4 cut(s) 614, 1299, 1567, 2299
TaqI TCGA 6 cut(s) 589, 1506, 2032, 2390, 2493, 3081
TatI WGTACW 2 cut(s) 1079, 1084
TscAI CASTG 6 cut(s) 154, 1332, 2022, 2308, 2515, 2693
TseFI GTSAC 3 cut(s) 1889, 1946, 2684
TseI GCWGC 8 cut(s) 14, 143, 339, 438, 2408, 2411, 2542, 3097
Tsp45I GTSAC 3 cut(s) 1889, 1946, 2684
TspGWI ACGGA 3 cut(s) 290, 1157, 2185
TspRI CASTG 6 cut(s) 154, 1332, 2022, 2308, 2515, 2693
Vha464I CTTAAG 2 cut(s) 1199, 2692
VpaK11BI GGWCC 2 cut(s) 2396, 2526
XbaI TCTAGA 5 cut(s) 115, 863, 1846, 1864, 1960
XceI RCATGY 3 cut(s) 284, 1457, 2192
XmiI GTMKAC 2 cut(s) 540, 1635
XmnI GAANNNNTTC 2 cut(s) 669, 3023
Zsp2I ATGCAT 3 cut(s) 1407, 2190, 2595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.