RchiOBHm_Chr4g0397871

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000042
Physical Location & Seq
Reverse (-)
14287984 .. 14289261
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37009

Sequence Viewer

Length: 1278 bp
ATGGAATTTCTCGGAGATGAGACTATAGACAGAAGAGCTTGTCGTCTTTGTCATATGATAAAAGACAAGAAAGTTCTGGTAATTTTGGATGACATACAAGAAAAAGTTGATTTGGAGATTTTGGGACTTCCACAGGTGCCCAATTGTAAACTATTGTTGACATCTAGAATCAGAGAAGTATTATCGGTTGAGATGCGTATACAAAAGGAGTTTCAACTTAACCTTTTAAATGCAGAAGAAAACTGGAGTTTATTTGAGAAGATGGCAGGTGAAGTTGTTCAAAATTCCGCCATACGAGAAGTAGCAATACAAGTCGCGCAAAAGTGCAGAGGCTTGCCTGTTTTAGTGGTAATAGTTGCAAGTGCCCTGAAGAATACAAGTACATTACATGCTTGGAAAGATGCCTTGCGACGCCTAAAAACATTTGACAAACAAGGATTTACGGAAAAAGCATACTTGGCTCTGGAGTGGAGTTACGAGCAATTGGACGATGAGGAGCTTAAGCCATTCTTCTTGCTTTCTGGAATTATGAGGGGTTACTCTATATGTCTTCTTGACTTGTTGAAATATAGTATGGCCTTGGGTTTGATTAAAAACGTGGATACACTAGAAGAAGCACAGGATGCATTGCATTCACTGGTTGAAAAACTTAAAGATTGTTGTCTGTTGCTAGAGGACAGTGATGATAATAAACTTGTCAGAATGCATGACCTTGTTCATGAAGTTGTAAACCGGATAGCCTTGAGAGATCAATACGTTTTCAAAGTTGCTATAGGAGATGAGTTCAAAGAATGGCCAGCTAAGGATTTTTGTACAAAGTGCACTATGATCATTGTCAAAAGATGCAGTATCCCCCATCTTCCTGAAGGTTTGGAATGTCTAGAACTGAAAATGTTTACCTTTTCTAGTAGGGATGCTGATCACTACTTGGAAATTCCTAACAACTTTTTCGAAGGGATGAAGAAACTCAAAGTGTTGGACTTCACTAGGTTGAGTATCCCATCTCTACCTTCATCACTTGAATTCCTAGAAAGTCTTCGGACGTTGTGTTTGGATCAATGCACATTGGGAGATGTAACTCTTATCGGACAGCTACAAAACTTGGAAATTCTTAGCTTTCAAGAATCCAAATTCAAAGAGTTGCCCAAAGAAATAGGGCAATTGACTCGTCTGCGATTGTTGGATTTGAATGGTTTCTCTCAACTCGAAGTGATCTCACCTAATGTTCTATCAAGCTTGAAAAGATTAGAGCACTTGGGAATGAGTAATAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

425

Amino Acids

48.76

Weight (kDa)

5.42

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 12 - 91 1.1e-12 NB-ARC domain
LRR_14 PF23598 319 - 419 4.3e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 199
AccII CGCG 1 cut(s) 317
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 1062
AcoI YGGCCR 1 cut(s) 794
AcsI RAATTY 6 cut(s) 5, 283, 933, 1022, 1107, 1130
AcuI CTGAAG 2 cut(s) 389, 885
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 2 cut(s) 382, 814
AflII CTTAAG 1 cut(s) 500
AluBI AGCT 6 cut(s) 38, 499, 800, 1093, 1116, 1236
AluI AGCT 6 cut(s) 38, 499, 800, 1093, 1116, 1236
Alw21I GWGCWC 2 cut(s) 824, 1254
Alw26I GTCTC 1 cut(s) 14
Alw44I GTGCAC 1 cut(s) 820
AlwI GGATC 1 cut(s) 1062
AoxI GGCC 2 cut(s) 576, 794
ApaLI GTGCAC 1 cut(s) 820
ApoI RAATTY 6 cut(s) 5, 283, 933, 1022, 1107, 1130
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
Asp700I GAANNNNTTC 3 cut(s) 276, 1035, 1193
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 281, 1209
AsuII TTCGAA 1 cut(s) 951
BaeGI GKGCMC 3 cut(s) 141, 367, 824
BalI TGGCCA 1 cut(s) 796
BanI GGYRCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbsI GAAGAC 2 cut(s) 542, 1028
Bbv12I GWGCWC 2 cut(s) 824, 1254
BccI CCATC 3 cut(s) 256, 864, 1009
BcgI CGANNNNNNTGC 2 cut(s) 1148, 1182
BciVI GTATCC 3 cut(s) 595, 860, 1007
BclI TGATCA 2 cut(s) 828, 919
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 7 cut(s) 165, 608, 671, 881, 906, 987, 1028
BfmI CTRYAG 2 cut(s) 24, 771
BfrI CTTAAG 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 257
BfuI GTATCC 3 cut(s) 595, 860, 1007
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 5 cut(s) 183, 391, 613, 833, 904
BpiI GAAGAC 2 cut(s) 542, 1028
BpmI CTGGAG 2 cut(s) 265, 485
Bpu10I CCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 579
BsaWI WCCGGW 1 cut(s) 732
Bse1I ACTGG 2 cut(s) 248, 642
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 918
BseDI CCNNGG 1 cut(s) 579
BseGI GGATG 4 cut(s) 94, 628, 919, 963
BseJI GATNNNNATC 1 cut(s) 918
BseMI GCAATG 1 cut(s) 626
BseNI ACTGG 2 cut(s) 248, 642
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 3 cut(s) 141, 367, 824
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 2 cut(s) 578, 796
BshNI GGYRCC 1 cut(s) 136
BsiHKAI GWGCWC 2 cut(s) 824, 1254
BsiSI CCGG 1 cut(s) 733
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 2 cut(s) 631, 708
BsnI GGCC 2 cut(s) 578, 796
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 4 cut(s) 141, 367, 824, 1254
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 5 cut(s) 748, 828, 919, 1054, 1212
BspACI CCGC 1 cut(s) 288
BspANI GGCC 2 cut(s) 578, 796
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 1062
BspQI GCTCTTC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 951
BspT107I GGYRCC 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 626
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 2 cut(s) 248, 642
BssECI CCNNGG 1 cut(s) 579
BssMI GATC 5 cut(s) 748, 828, 919, 1054, 1212
BssNAI GTATAC 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 579
Bst1107I GTATAC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 680
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 412
BstAFI CTTAAG 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 812
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 2 cut(s) 335, 798
BstDEI CTNAG 2 cut(s) 801, 1112
BstF5I GGATG 4 cut(s) 94, 628, 919, 963
BstFNI CGCG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 5 cut(s) 751, 831, 922, 1057, 1215
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 5 cut(s) 748, 828, 919, 1054, 1212
BstMWI GCNNNNNNNGC 2 cut(s) 458, 623
BstNSI RCATGY 1 cut(s) 392
BstSFI CTRYAG 2 cut(s) 24, 771
BstSLI GKGCMC 3 cut(s) 141, 367, 824
BstUI CGCG 1 cut(s) 317
BstV2I GAAGAC 2 cut(s) 542, 1028
BstZ17I GTATAC 1 cut(s) 200
BsuI GTATCC 3 cut(s) 595, 860, 1007
BsuRI GGCC 2 cut(s) 578, 796
BtsCI GGATG 4 cut(s) 94, 628, 919, 963
BtsIMutI CAGTG 2 cut(s) 635, 685
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 335, 798
CciI TCATGA 1 cut(s) 718
CfoI GCGC 1 cut(s) 319
CseI GACGC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 381, 813
CviAII CATG 3 cut(s) 389, 707, 719
CviQI GTAC 2 cut(s) 381, 813
DdeI CTNAG 2 cut(s) 801, 1112
DpnI GATC 5 cut(s) 750, 830, 921, 1056, 1214
DpnII GATC 5 cut(s) 748, 828, 919, 1054, 1212
DraI TTTAAA 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 794
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EciI GGCGGA 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 579
Eco57I CTGAAG 2 cut(s) 389, 885
EcoRI GAATTC 1 cut(s) 1022
EcoT14I CCWWGG 1 cut(s) 579
EcoT22I ATGCAT 2 cut(s) 628, 708
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 3 cut(s) 392, 710, 722
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 388, 706, 718
FauNDI CATATG 1 cut(s) 54
FbaI TGATCA 2 cut(s) 828, 919
FblI GTMKAC 1 cut(s) 199
FokI GGATG 4 cut(s) 101, 635, 926, 970
FspBI CTAG 7 cut(s) 165, 608, 671, 881, 906, 987, 1028
GlaI GCGC 1 cut(s) 318
GsuI CTGGAG 2 cut(s) 265, 485
HaeIII GGCC 2 cut(s) 578, 796
HapII CCGG 1 cut(s) 733
HgaI GACGC 1 cut(s) 420
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 3 cut(s) 392, 710, 722
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 1234
HinfI GANTC 3 cut(s) 168, 1124, 1165
HpaII CCGG 1 cut(s) 733
HphI GGTGA 2 cut(s) 281, 1209
Hpy166II GTNNAC 6 cut(s) 149, 159, 200, 730, 822, 897
Hpy188I TCNGA 5 cut(s) 14, 173, 701, 1041, 1088
Hpy188III TCNNGA 8 cut(s) 165, 464, 522, 554, 719, 863, 881, 1121
Hpy8I GTNNAC 6 cut(s) 149, 159, 200, 730, 822, 897
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 860, 947, 1020
HpyCH4III ACNGT 1 cut(s) 680
HpyCH4IV ACGT 3 cut(s) 597, 756, 1043
HpyCH4V TGCA 9 cut(s) 233, 327, 359, 626, 631, 706, 822, 846, 1062
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 623
HpyF3I CTNAG 2 cut(s) 801, 1112
HpySE526I ACGT 3 cut(s) 597, 756, 1043
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 3 cut(s) 392, 710, 722
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 2 cut(s) 828, 919
Kzo9I GATC 5 cut(s) 748, 828, 919, 1054, 1212
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 496
LweI GCATC 5 cut(s) 183, 391, 613, 833, 904
MaeI CTAG 7 cut(s) 165, 608, 671, 881, 906, 987, 1028
MaeII ACGT 3 cut(s) 597, 756, 1043
MaeIII GTNAC 3 cut(s) 473, 536, 1075
MalI GATC 5 cut(s) 750, 830, 921, 1056, 1214
MboI GATC 5 cut(s) 748, 828, 919, 1054, 1212
MfeI CAATTG 3 cut(s) 142, 482, 1160
MhlI GDGCHC 4 cut(s) 141, 367, 824, 1254
MlsI TGGCCA 1 cut(s) 796
MluNI TGGCCA 1 cut(s) 796
MlyI GAGTC 1 cut(s) 1159
MmeI TCCRAC 2 cut(s) 957, 1161
MnlI CCTC 4 cut(s) 323, 487, 525, 667
Mox20I TGGCCA 1 cut(s) 796
Mph1103I ATGCAT 2 cut(s) 628, 708
MroXI GAANNNNTTC 3 cut(s) 276, 1035, 1193
MscI TGGCCA 1 cut(s) 796
MseI TTAA 5 cut(s) 219, 227, 501, 591, 651
Msp20I TGGCCA 1 cut(s) 796
MspCI CTTAAG 1 cut(s) 500
MspI CCGG 1 cut(s) 733
MunI CAATTG 3 cut(s) 142, 482, 1160
Mva1269I GAATGC 2 cut(s) 631, 708
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 458, 623
NdeI CATATG 1 cut(s) 54
NdeII GATC 5 cut(s) 748, 828, 919, 1054, 1212
NlaIII CATG 3 cut(s) 392, 710, 722
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 2 cut(s) 628, 708
NspI RCATGY 1 cut(s) 392
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 28
PctI GAATGC 2 cut(s) 631, 708
PdmI GAANNNNTTC 3 cut(s) 276, 1035, 1193
PfeI GAWTC 2 cut(s) 168, 1124
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
PspN4I GGNNCC 1 cut(s) 138
RsaI GTAC 2 cut(s) 382, 814
RsaNI GTAC 2 cut(s) 381, 813
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 5 cut(s) 219, 227, 501, 591, 651
Sau3AI GATC 5 cut(s) 748, 828, 919, 1054, 1212
SchI GAGTC 1 cut(s) 1159
SduI GDGCHC 4 cut(s) 141, 367, 824, 1254
SfaNI GCATC 5 cut(s) 183, 391, 613, 833, 904
SfcI CTRYAG 2 cut(s) 24, 771
SfuI TTCGAA 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 500, 742
SmoI CTYRAG 2 cut(s) 500, 742
SsiI CCGC 1 cut(s) 288
SspMI CTAG 7 cut(s) 165, 608, 671, 881, 906, 987, 1028
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 1 cut(s) 680
TaiI ACGT 3 cut(s) 600, 759, 1046
TaqI TCGA 2 cut(s) 951, 1206
TatI WGTACW 2 cut(s) 380, 812
TfiI GAWTC 2 cut(s) 168, 1124
Tru1I TTAA 5 cut(s) 219, 227, 501, 591, 651
Tru9I TTAA 5 cut(s) 219, 227, 501, 591, 651
TscAI CASTG 2 cut(s) 642, 685
TspDTI ATGAA 4 cut(s) 707, 735, 974, 1002
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 642, 685
Vha464I CTTAAG 1 cut(s) 500
VneI GTGCAC 1 cut(s) 820
XapI RAATTY 6 cut(s) 5, 283, 933, 1022, 1107, 1130
XbaI TCTAGA 2 cut(s) 164, 880
XceI RCATGY 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 199
XmnI GAANNNNTTC 3 cut(s) 276, 1035, 1193
XspI CTAG 7 cut(s) 165, 608, 671, 881, 906, 987, 1028
Zsp2I ATGCAT 2 cut(s) 628, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.