Rroxscaffold_2G00134960

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
72612154 .. 72622972
10819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00134960.1

Sequence Viewer

Length: 2550 bp
ATGGAGATCCTTACTGCAATTGTCGGAGCTGTTGCCGACTACACAGTTGGCCCCATTATTCGGCAAGGGGGTTATATAATTCATTGCAAACGCAACATTCGGACACTACAGACTCGTGTGGAGGATCTTAAGGCTGCCAAAGGACGGGTTGATGTTGACATTGATAATGCTTATAGAAAAGGAGAACACATCTATCCTGATGTCACGCAGTGGATAACAAAGGTTGATGAGATCGCGGGAAAGGCAGACGAATTATTGAAAGATGAACACCAAGCAAAGATGAATTGTATGCATGGTTTTTGTCCTAATCTGTTGACTCGTCATCAGCTAAGCAGAAAATCAACAAAATTGGTGGAAGTGGTTCTGGAATTCCGGGGACAAGCAAATTTTCCCAGTATCTCATATGGCGGTCGCACTGGAGTGGTATTTCTCACTTCTACCAAAGATTATGAGGCATTTGATTCAAGGATTTTAACTCTGCAAAGAATCATGGATGAATTGAAAAATCTTGATATCAACAAGATTGGGGTGTATGGTATTGCAGGGGTGGGGAAGACCACACTGGCAGAAGAAGTTGTTAGGCAAGTTATAAAAGATGAGTTATTTGATGATGTGGTCATTGTTCGAGATGTGAAAGAATATCCAGATATTGAAAGAATTCAAAAAGAAATTGCTGAACAGTTGGGTATGGATAATTCTAATGGCTTCAAAGATCTATCTAGAACTGAAAAGGCGCGTCGAATATACGACAGGTTAAAAAACAAGAAGACTTTTCTAGTTTTGGATGATATTTGGAATTTCTTTGATTTAAAAGTTGTGGGACTTCCCGACGTGGAAACTTGTAAAATATTGTTCACATCTAGAAGTGGAGAAGTGTTATCCACTCAGATGGGTACACAAAAAGAGTTTCAGCTTGCCGCCTTAGAAGAAGAAGAATGTTGGAGTTTATTTGAAAGCAAGGTGGGTGATGTTGTTAGAGATCCCATGATACTAACTGTAGCAACCCAAGTAGCCAAAAAATGTGGTGGTTTGCCAATTTTGGTTGTCACAGTTGCAAGTACATTAAAAAACTGTACTCTAGCCGAGTGGGAGGATGCTTTGAGACGCCTTGAAACGTTTCAGAATACTGGATCAATCAAACAAGCATTCTCGGCTCTAGAGTGGATTTACGATAAATTGGATGATGAGGAGCTTCAGTCATTGTTCTTGCTGTCTGGAGTTGCAACATGGAAGAACTCCATCTTTCTCGATGACTTGTTGAAACTTGCAGTGGGGTTGGATTTGCTTAAAGGCGTTAATACAATGAAAGAAGCACGAAATTCATTGCTGTCATTGGTTAAAAAGCTGAAAAACTTTTGTCTATTGCTGGATGATAATGGTGACACATCTGTTAGAATGCATGATCTTGTCAATGATGTTGCTAAGGAAATTGCATCCAGGGATCAACAACTCTTATCAGTAGTATGCGGAGCTGAGTTGAAAGACTGGCCAAAAACCTCAAAGTGCGGTAAGATCTCAATCAAATCTGATAGTCTCGCTAAACTTTCTGAAGTTTTGGTATGCCAAAAATTAGAAATGTTCTATCTGCATTGTGAAGACAACCAACCACTCCAAGTCCCAAACGGTCTTTTTGCAAACATGGAAAAACTCAAAGTGTTGAGTTTAATGAATGTGAAGAATCTTGCATCTCTTGGGTTCTTGAAGAATCTTCAGACGCTGTGTTTAGATGAATGCGATGAGGAAGACATAGCTGTAGTTGGAGAGCTAAGCAAATTAGAAATTCTCAGCTTGGGAAACTCCAATATTATAGAACTGCCTAAAGAAATTGGGCAATTGAATAGTCTGCGATTATTGGATTTAACCTATTGCTATGACCTTGAAGTGATTGCACCTAATGTTTTATCAAGGCTGACAAGACTAGAAGACTTGAGAATGAGAAACAGCTCTATCAAATGGGAGGCTGAACAGGAAGGTGAAAGAAGTAATGCTAGTCTCTCGGAGCTGAAGCACTTGTCTCTACTAACTGCATTGGAAATAGAAATTTCAAATCCTGGTATGCTTCCAAAGGACTTGTTCTCCGATAAATTAGAAAGATTCTATATAAGTATTGGCGATCACGATTGGGAAGGAAGGAGCATGAATACGTTGAAACTCCAGTTCACTACTGGCGACGAATTGGACCAAGGTCTAAAGATGTTGATGAAGAGATCTGAATATTTGACTTTGCAAGGGGGAGCGAATGTTAATGAAACTGCCTATCGATTAGAACGCGACAATTTTCTGCAATTAAAGCATCTTCAACTCAGGGAACTAGATACTACATACATCATTAATTCGAAGGTTGTGTTTTCCAGTTTAACAACTTTGGAAGTGACTGACTGTGATGGTATAAAATTCTTGTTCTTGTGTTCAATGGCCAGAAGTCTAATTCAACTCAAAACTCTCGAGATACGTAATTGTAGAAGCATGGTGGAAATAGTATCCACACAAGAAGACGATGAGAAAAACAATATCGTTAACATGTTCTCTAAACTAGAATCTCGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

849

Amino Acids

96.17

Weight (kDa)

5.26

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 160 - 322 7e-32 NB-ARC domain
AAA_22 PF13401 177 - 267 6.2e-06 AAA domain
LRR_14 PF23598 586 - 681 6e-08 Leucine-rich repeat region
LRR_RPS2 PF23247 763 - 840 8.6e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AccII CGCG 3 cut(s) 236, 736, 2271
AciI CCGC 5 cut(s) 236, 408, 918, 1467, 1506
AclI AACGTT 1 cut(s) 1115
AclWI GGATC 4 cut(s) 132, 974, 1138, 1449
AcoI YGGCCR 2 cut(s) 1487, 2415
AcsI RAATTY 8 cut(s) 368, 385, 657, 796, 1318, 1779, 2040, 2393
AcuI CTGAAG 4 cut(s) 1178, 1569, 1694, 2024
AcyI GRCGYC 1 cut(s) 1105
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 3 cut(s) 895, 1060, 1075
AfiI CCNNNNNNNGG 2 cut(s) 60, 144
AflII CTTAAG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 2520
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 2 cut(s) 1436, 2050
AleI CACNNNNGTG 1 cut(s) 419
Alw26I GTCTC 4 cut(s) 1096, 1538, 1997, 2019
AlwI GGATC 4 cut(s) 132, 974, 1138, 1449
AlwNI CAGNNNCTG 1 cut(s) 1717
Ama87I CYCGRG 1 cut(s) 2444
AoxI GGCC 3 cut(s) 49, 1487, 2415
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 8 cut(s) 368, 385, 657, 796, 1318, 1779, 2040, 2393
AseI ATTAAT 1 cut(s) 2331
Asp700I GAANNNNTTC 3 cut(s) 360, 657, 1116
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 50, 2179
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 3 cut(s) 977, 1391, 1985
AsuII TTCGAA 1 cut(s) 2336
AvaI CYCGRG 1 cut(s) 2444
AvaII GGWCC 1 cut(s) 2179
BalI TGGCCA 2 cut(s) 1489, 2417
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 6 cut(s) 560, 773, 1602, 1749, 1929, 2499
BbvI GCAGC 1 cut(s) 121
BccI CCATC 3 cut(s) 883, 1247, 2378
BciT130I CCWGG 2 cut(s) 1438, 2052
BciVI GTATCC 1 cut(s) 2491
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 4 cut(s) 1096, 1538, 1997, 2019
BfaI CTAG 9 cut(s) 720, 776, 861, 1079, 1157, 1919, 1989, 2312, 2534
BfmI CTRYAG 3 cut(s) 107, 996, 1752
BfrI CTTAAG 1 cut(s) 128
BfuI GTATCC 1 cut(s) 2491
BglII AGATCT 3 cut(s) 712, 1512, 2207
BisI GCNGC 2 cut(s) 135, 918
BlpI GCTNAGC 2 cut(s) 329, 1766
BlsI GCNGC 2 cut(s) 136, 919
Bme1390I CCNGG 3 cut(s) 374, 1438, 2052
Bme18I GGWCC 1 cut(s) 2179
BmeT110I CYCGRG 1 cut(s) 2444
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 50, 2179
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 374, 1438, 2052
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 4 cut(s) 1084, 1442, 1694, 2302
BmuI ACTGGG 1 cut(s) 387
BoxI GACNNNNGTC 1 cut(s) 2184
BpiI GAAGAC 6 cut(s) 560, 773, 1602, 1749, 1929, 2499
BpmI CTGGAG 3 cut(s) 438, 1236, 2138
Bpu10I CCTNAGC 1 cut(s) 1422
Bpu1102I GCTNAGC 2 cut(s) 329, 1766
Bpu14I TTCGAA 1 cut(s) 2336
BpuEI CTTGAG 1 cut(s) 1948
BpuMI CCSGG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 2260
BsaAI YACGTR 1 cut(s) 2453
BsaBI GATNNNNATC 1 cut(s) 1517
BsaHI GRCGYC 1 cut(s) 1105
BsaJI CCNNGG 3 cut(s) 373, 1437, 2182
BsaXI ACNNNNNCTCC 6 cut(s) 1181, 1211, 2060, 2090, 2226, 2256
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 144
Bse1I ACTGG 8 cut(s) 393, 421, 567, 1132, 1490, 2155, 2170, 2352
Bse3DI GCAATG 2 cut(s) 82, 1322
Bse8I GATNNNNATC 1 cut(s) 1517
BseBI CCWGG 2 cut(s) 1438, 2052
BseCI ATCGAT 1 cut(s) 2260
BseDI CCNNGG 3 cut(s) 373, 1437, 2182
BseGI GGATG 6 cut(s) 499, 790, 1099, 1186, 1375, 1433
BseJI GATNNNNATC 1 cut(s) 1517
BseLI CCNNNNNNNGG 2 cut(s) 60, 144
BseMI GCAATG 2 cut(s) 82, 1322
BseMII CTCAG 4 cut(s) 899, 1464, 1798, 2317
BseNI ACTGG 8 cut(s) 393, 421, 567, 1132, 1490, 2155, 2170, 2352
BseRI GAGGAG 1 cut(s) 1202
BseXI GCAGC 1 cut(s) 121
Bsh1236I CGCG 3 cut(s) 236, 736, 2271
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 3 cut(s) 51, 1489, 2417
BshVI ATCGAT 1 cut(s) 2260
BsiEI CGRYCG 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 2444
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 3 cut(s) 390, 834, 1601
BslI CCNNNNNNNGG 2 cut(s) 60, 144
BsmAI GTCTC 4 cut(s) 1096, 1538, 1997, 2019
BsmBI CGTCTC 1 cut(s) 1096
BsmFI GGGAC 3 cut(s) 390, 834, 1601
BsmI GAATGC 3 cut(s) 1145, 1401, 1736
BsnI GGCC 3 cut(s) 51, 1489, 2417
BsoBI CYCGRG 1 cut(s) 2444
Bsp119I TTCGAA 1 cut(s) 2336
Bsp1720I GCTNAGC 2 cut(s) 329, 1766
BspACI CCGC 5 cut(s) 236, 408, 918, 1467, 1506
BspANI GGCC 3 cut(s) 51, 1489, 2417
BspCNI CTCAG 4 cut(s) 898, 1465, 1797, 2316
BspDI ATCGAT 1 cut(s) 2260
BspFNI CGCG 3 cut(s) 236, 736, 2271
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 4 cut(s) 132, 974, 1138, 1449
BspT104I TTCGAA 1 cut(s) 2336
BspTI CTTAAG 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 82, 1322
BsrI ACTGG 8 cut(s) 393, 421, 567, 1132, 1490, 2155, 2170, 2352
BssECI CCNNGG 3 cut(s) 373, 1437, 2182
BssNI GRCGYC 1 cut(s) 1105
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 2182
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 1438, 2052
Bst4CI ACNGT 7 cut(s) 46, 681, 997, 1051, 1073, 1625, 2381
Bst6I CTCTTC 1 cut(s) 2198
BstACI GRCGYC 1 cut(s) 1105
BstAFI CTTAAG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 2453
BstBI TTCGAA 1 cut(s) 2336
BstC8I GCNNGC 1 cut(s) 915
BstDEI CTNAG 8 cut(s) 329, 885, 922, 1422, 1473, 1766, 1784, 2303
BstF5I GGATG 6 cut(s) 499, 790, 1099, 1186, 1375, 1433
BstFNI CGCG 3 cut(s) 236, 736, 2271
BstHHI GCGC 1 cut(s) 736
BstMAI GTCTC 4 cut(s) 1096, 1538, 1997, 2019
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 242, 1151, 2290
BstNI CCWGG 2 cut(s) 1438, 2052
BstNSI RCATGY 1 cut(s) 2524
BstPAI GACNNNNGTC 1 cut(s) 2184
BstSCI CCNGG 3 cut(s) 372, 1436, 2050
BstSFI CTRYAG 3 cut(s) 107, 996, 1752
BstSNI TACGTA 1 cut(s) 2453
BstUI CGCG 3 cut(s) 236, 736, 2271
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 6 cut(s) 560, 773, 1602, 1749, 1929, 2499
BstX2I RGATCY 6 cut(s) 6, 124, 712, 979, 1512, 2207
BstXI CCANNNNNNTGG 1 cut(s) 889
BstYI RGATCY 6 cut(s) 6, 124, 712, 979, 1512, 2207
Bsu15I ATCGAT 1 cut(s) 2260
BsuI GTATCC 1 cut(s) 2491
BsuRI GGCC 3 cut(s) 51, 1489, 2417
BsuTUI ATCGAT 1 cut(s) 2260
BtgZI GCGATG 1 cut(s) 1749
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 6 cut(s) 499, 790, 1099, 1186, 1375, 1433
BtsI GCAGTG 2 cut(s) 215, 1275
BtsIMutI CAGTG 4 cut(s) 215, 414, 560, 1275
Cac8I GCNNGC 1 cut(s) 915
CaiI CAGNNNCTG 1 cut(s) 1717
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 50, 2179
ClaI ATCGAT 1 cut(s) 2260
CseI GACGC 3 cut(s) 725, 1113, 1723
Csp6I GTAC 3 cut(s) 894, 1059, 1074
CspCI CAANNNNNGTGG 4 cut(s) 333, 368, 1003, 1038
CviAII CATG 9 cut(s) 293, 490, 985, 1227, 1400, 1639, 2137, 2467, 2521
CviQI GTAC 3 cut(s) 894, 1059, 1074
DdeI CTNAG 8 cut(s) 329, 885, 922, 1422, 1473, 1766, 1784, 2303
DraI TTTAAA 1 cut(s) 810
DraIII CACNNNGTG 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 1487, 2415
Eam1104I CTCTTC 1 cut(s) 2198
EarI CTCTTC 1 cut(s) 2198
Eco105I TACGTA 1 cut(s) 2453
Eco130I CCWWGG 1 cut(s) 2182
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 2179
Eco57I CTGAAG 4 cut(s) 1178, 1569, 1694, 2024
Eco88I CYCGRG 1 cut(s) 2444
EcoRI GAATTC 2 cut(s) 368, 657
EcoRII CCWGG 2 cut(s) 1436, 2050
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 2182
EcoT22I ATGCAT 2 cut(s) 294, 1401
ErhI CCWWGG 1 cut(s) 2182
Esp3I CGTCTC 1 cut(s) 1096
FaeI CATG 9 cut(s) 296, 493, 988, 1230, 1403, 1642, 2140, 2470, 2524
FaqI GGGAC 3 cut(s) 390, 834, 1601
FatI CATG 9 cut(s) 292, 489, 984, 1226, 1399, 1638, 2136, 2466, 2520
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 135, 918
FokI GGATG 6 cut(s) 506, 797, 1106, 1193, 1382, 1420
Fsp4HI GCNGC 2 cut(s) 135, 918
FspBI CTAG 9 cut(s) 720, 776, 861, 1079, 1157, 1919, 1989, 2312, 2534
GlaI GCGC 1 cut(s) 735
GluI GCNGC 2 cut(s) 135, 918
GsuI CTGGAG 3 cut(s) 438, 1236, 2138
HaeIII GGCC 3 cut(s) 51, 1489, 2417
HapII CCGG 1 cut(s) 373
HgaI GACGC 3 cut(s) 725, 1113, 1723
HhaI GCGC 1 cut(s) 736
Hin1I GRCGYC 1 cut(s) 1105
Hin1II CATG 9 cut(s) 296, 493, 988, 1230, 1403, 1642, 2140, 2470, 2524
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 3 cut(s) 157, 315, 2518
HindII GTYRAC 3 cut(s) 157, 315, 2518
HinfI GANTC 8 cut(s) 112, 316, 461, 486, 1678, 1705, 2094, 2537
HpaI GTTAAC 1 cut(s) 2518
HpaII CCGG 1 cut(s) 373
HphI GGTGA 3 cut(s) 977, 1391, 1985
Hpy166II GTNNAC 6 cut(s) 157, 315, 855, 896, 2160, 2518
Hpy8I GTNNAC 6 cut(s) 157, 315, 855, 896, 2160, 2518
Hpy99I CGWCG 3 cut(s) 741, 833, 2174
HpyAV CCTTC 4 cut(s) 1964, 2120, 2124, 2332
HpyCH4III ACNGT 7 cut(s) 46, 681, 997, 1051, 1073, 1625, 2381
HpyCH4IV ACGT 4 cut(s) 831, 1115, 2144, 2452
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 1151, 2290
HpyF3I CTNAG 8 cut(s) 329, 885, 922, 1422, 1473, 1766, 1784, 2303
HpySE526I ACGT 4 cut(s) 831, 1115, 2144, 2452
Hsp92I GRCGYC 1 cut(s) 1105
Hsp92II CATG 9 cut(s) 296, 493, 988, 1230, 1403, 1642, 2140, 2470, 2524
HspAI GCGC 1 cut(s) 734
KspAI GTTAAC 1 cut(s) 2518
LmnI GCTCC 6 cut(s) 26, 1189, 1469, 1999, 2133, 2234
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 4 cut(s) 1084, 1442, 1694, 2302
MaeI CTAG 9 cut(s) 720, 776, 861, 1079, 1157, 1919, 1989, 2312, 2534
MaeII ACGT 4 cut(s) 831, 1115, 2144, 2452
MaeIII GTNAC 4 cut(s) 202, 1045, 1379, 2371
MfeI CAATTG 2 cut(s) 18, 1832
MflI RGATCY 6 cut(s) 6, 124, 712, 979, 1512, 2207
MlsI TGGCCA 2 cut(s) 1489, 2417
MluNI TGGCCA 2 cut(s) 1489, 2417
MlyI GAGTC 2 cut(s) 106, 310
MmeI TCCRAC 4 cut(s) 4, 920, 1257, 1738
MnlI CCTC 7 cut(s) 115, 445, 1084, 1180, 1507, 1732, 1951
Mox20I TGGCCA 2 cut(s) 1489, 2417
Mph1103I ATGCAT 2 cut(s) 294, 1401
MroXI GAANNNNTTC 3 cut(s) 360, 657, 1116
MscI TGGCCA 2 cut(s) 1489, 2417
MslI CAYNNNNRTG 2 cut(s) 419, 887
Msp20I TGGCCA 2 cut(s) 1489, 2417
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 3 cut(s) 374, 1438, 2052
MunI CAATTG 2 cut(s) 18, 1832
Mva1269I GAATGC 3 cut(s) 1145, 1401, 1736
MvaI CCWGG 2 cut(s) 1438, 2052
MvnI CGCG 3 cut(s) 236, 736, 2271
MwoI GCNNNNNNNGC 3 cut(s) 242, 1151, 2290
NciI CCSGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 403
NlaIII CATG 9 cut(s) 296, 493, 988, 1230, 1403, 1642, 2140, 2470, 2524
NlaIV GGNNCC 1 cut(s) 52
NmeAIII GCCGAG 2 cut(s) 1108, 1130
NmuCI GTSAC 4 cut(s) 202, 1045, 1379, 2371
NsiI ATGCAT 2 cut(s) 294, 1401
NspI RCATGY 1 cut(s) 2524
NspV TTCGAA 1 cut(s) 2336
OliI CACNNNNGTG 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 2444
PciI ACATGT 1 cut(s) 2520
PctI GAATGC 3 cut(s) 1145, 1401, 1736
PdmI GAANNNNTTC 3 cut(s) 360, 657, 1116
PfeI GAWTC 6 cut(s) 461, 486, 1678, 1705, 2094, 2537
PkrI GCNGC 2 cut(s) 136, 919
PleI GAGTC 2 cut(s) 106, 310
PpsI GAGTC 2 cut(s) 106, 310
Ppu21I YACGTR 1 cut(s) 2453
PscI ACATGT 1 cut(s) 2520
PshAI GACNNNNGTC 1 cut(s) 2184
PshBI ATTAAT 1 cut(s) 2331
PsiI TTATAA 1 cut(s) 590
Psp1406I AACGTT 1 cut(s) 1115
Psp6I CCWGG 2 cut(s) 1436, 2050
PspGI CCWGG 2 cut(s) 1436, 2050
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 50, 2179
PstNI CAGNNNCTG 1 cut(s) 1717
PsuI RGATCY 6 cut(s) 6, 124, 712, 979, 1512, 2207
RsaI GTAC 3 cut(s) 895, 1060, 1075
RsaNI GTAC 3 cut(s) 894, 1059, 1074
RseI CAYNNNNRTG 2 cut(s) 419, 887
SatI GCNGC 2 cut(s) 135, 918
Sau96I GGNCC 2 cut(s) 50, 2179
SchI GAGTC 2 cut(s) 106, 310
ScrFI CCNGG 3 cut(s) 374, 1438, 2052
SfaNI GCATC 4 cut(s) 1084, 1442, 1694, 2302
SfcI CTRYAG 3 cut(s) 107, 996, 1752
Sfr274I CTCGAG 1 cut(s) 2444
SfuI TTCGAA 1 cut(s) 2336
SinI GGWCC 1 cut(s) 2179
SlaI CTCGAG 1 cut(s) 2444
SmiMI CAYNNNNRTG 2 cut(s) 419, 887
SmlI CTYRAG 3 cut(s) 128, 1927, 2444
SmoI CTYRAG 3 cut(s) 128, 1927, 2444
SnaBI TACGTA 1 cut(s) 2453
SsiI CCGC 5 cut(s) 236, 408, 918, 1467, 1506
SspI AATATT 3 cut(s) 849, 1804, 2216
SspMI CTAG 9 cut(s) 720, 776, 861, 1079, 1157, 1919, 1989, 2312, 2534
StyD4I CCNGG 3 cut(s) 372, 1436, 2050
StyI CCWWGG 1 cut(s) 2182
TaaI ACNGT 7 cut(s) 46, 681, 997, 1051, 1073, 1625, 2381
TaiI ACGT 4 cut(s) 834, 1118, 2147, 2455
TaqI TCGA 7 cut(s) 625, 739, 1248, 2260, 2336, 2445, 2542
TatI WGTACW 2 cut(s) 1058, 1073
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 6 cut(s) 461, 486, 1678, 1705, 2094, 2537
TscAI CASTG 4 cut(s) 215, 421, 567, 1275
TseFI GTSAC 4 cut(s) 202, 1045, 1379, 2371
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 4 cut(s) 202, 1045, 1379, 2371
TspRI CASTG 4 cut(s) 215, 421, 567, 1275
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 2179
VspI ATTAAT 1 cut(s) 2331
XapI RAATTY 8 cut(s) 368, 385, 657, 796, 1318, 1779, 2040, 2393
XbaI TCTAGA 3 cut(s) 719, 860, 1156
XceI RCATGY 1 cut(s) 2524
XcmI CCANNNNNNNNNTGG 1 cut(s) 2162
XhoI CTCGAG 1 cut(s) 2444
XmnI GAANNNNTTC 3 cut(s) 360, 657, 1116
XspI CTAG 9 cut(s) 720, 776, 861, 1079, 1157, 1919, 1989, 2312, 2534
Zsp2I ATGCAT 2 cut(s) 294, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.