Rh7DG212400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000042
Physical Location & Seq
Forward (+)
20466370 .. 20474314
7945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG212400.1

Sequence Viewer

Length: 4113 bp
ATGGAGATTCTTGCTGCAATTGCCGGAAAACTTGCCGAGTTCACAGTTGAACCAATTGGACACCAAGTGGGTTATCTAGCTCACTACAAAAGCAACCATCAAAAGCTGCAGACCAAATTGAAGGAATTAATTGCTGTCAGAGATGGGGTTCAACATAAGGTTGATCATGTTGAGAGAGAAGGTAAAAGAGTCGAGGCTACTGTTCTGAACTGGAAGGCAAGAGTGAATGCAATCATCACAGAGGCAGAGGAATTCCTGAAAGACGGCCGCCACGCGCAAACCGAGTGTCTTCATGGTTTTTGTCCTCATTTGGTGCTCCGTTATCGACTAAGCAGGAAATCAACAAAATTGGCGGAGGAGATTGATGAACTTGATCAAAAAAAGGAGTTCCCCAACTTTGCATATGATGTTACTCCACAAGAGGTATTTCTCGTATCTACCGGGCATTACAGTACATTTGATTCAAGGAATTCAATTGTGATGAGAGTCATGGAGGAACTGAGAAATCCTAATACAGAAATGATTCTGGTATGGGGAATCGGTGGAGTAGGGAAGACCACACTTGTGGAAGAAGTTCTTAGGAAAGCTGAGGATAACAACTTATTTGATGATGTGGTGATGGTGAGAGATGTTAAAGAGAACCCAGACCTTGAAAAAATCCAAAAAGAAATTGCCACAAAGTTAGGTATGAGCATCAACGAAAATCAGACTCTAGCTGAAAGAGCCCCCTCTCTGTGTACTAGGATAAAAGAAAAAAGGACTCTTGTAGTTTTGGATGACGTTTGGGAAAAAATTGATCTGGTGGCCGTCGGACTTCCCCGCTTGGTTACTTGTAAAGTAGTGTTGACAAGTAGAAGCCGAAAGGAATTGTCGTTGGATATGCGTACACAGATTGATATTTCCCTTGATGTTTTAAATGAAGAGGAAGCATGGAATTTATTTGAGAAGATGGCTGGTGATGTTGTCAAAGATAGCCGAATACGAAGCGTAGCAATTGAAGTAGCCAAAAAATGTGGAAGTTTGCCTGTCTTGATTGTTACGGTTGCAAGAGCTCTGAAAGACACAAACAATATTCGTGCATGGAGAGACACCTTGAGACGCCTTGGAGGCTTTGACAACAAAGAACTTACAGAAAAAGCATACTTGGCTCTGGAGTGGAGTTACGATCAATTGGAAGATAAAGAGCTTAAACCGTTGTTCTTGCTTTGTGGGATTATCGTAGTTAAGAACCATATTTATTTGGCAGACTTGTTGAAATATGGTTTTGTTTTGGGTTTGATAAAAAATGTCTATACAATAGAAGAAGCACGAGATGCATTGGATCCACTGGTTAAAAAGCTTAAAGATTCTTGCTTGTTGCTGGACAGTGATATCAATATGCATGTTAGAATGCATGATCTCGTATGCGAGGTTGCTGCGTGGATTGCATCCAGAAAACACCACGTCTTATCAGTTGGGTGTGGTGGTGAATTGAAAGAATGGCCTGAGAAAGATTTCTTTAAAAGGTGCGGTACGATGTCCTTAAAATCCAGCAATATTCCCATGCTTTCTCAACTATCTGGGGAATGCCAGAAAATAGAAATGTTTTATTTGTACAATAAAGGTGTTGCATCGGTGGAAATCCCAGCCAACTTTTTTAGTGAAATGGAGAAACTGAAAGTGTTGGGTTTAACTGAAGTGGATATGGTGTCACTACCCCCATCTCTTCAGCTCTTGAAGAATGTTCAGACGTTGTGTTTAGAAGACTGTGAGTTGGAAGATGTAGCTCTAGTTGGATATCTAAGCAAATTAGAGATTCTTAGCTTTGCGCGGTCCAACATTAGACAGCTACCCGAAGAAATAGGGGAATTGATTCGATTGAGATGGTTGGATTTGAGTGATTGTGTCAAACTTAAAGTGATTTCACCTGGTGTTATTTCAAGGTTGGAAAGACTAGAAGACTTATCACTGAGAAACGTCTTTCTCAAATGGGAGGCTGAAAAGGCAGGAAGTAATGCTAGTCTTTTAGAGCTGAAAGACTTATCTCAACTAACTGCATTGGAGATATATATTGAAGATGCAAATATTATTCCATCATACTTGTTCTCCAGTAGGTTGGTAAGATACCAAATATATATTGGCGATGTTTGGAAGAGATATGGTTGGGAGAAGACGTCGACTATGGCTGAAACGACCCTCAACACGCTAAAACTGAAGCTCGCTCCCAACGATGAATTGGACCACGGTATCAAAACATTGTTGAAGAGATCTGAAGATTTGTCTTTGGATGGAACAGAGAGTGTTAAAAGTATTCTCCATCAATTAGATGTTGAAGATTTTCAGCAACTGATACACCTCCGTCTCCAAAACAATGTTGATTTCACCTATATCATTAATAGGAAGGTTGTGTTCCCCAACTTAACAACCTTGAGCATATGTAGCTGTGACCATCTAAGTTTCTTGTTCTCATTTTCTATGGCTAAAAATTTGGTGGAGCTCAAACATCTTGAAGTATCCAGTTGTGAAATAATGGAAGAGATAGTATCAGTAAGAGATCAATCCAACGGAGAAAATATCGATATCATGTTTTGTAAGTTGGAAAGTCTAATACTGGATAAACTCCCAAACATCACTAGATTCTGTACTGAATTTTCTCCCGTGACGAAATTTGATACGGAACTGGGGGCATCCATCTTTGATCCTACGAGTAGTAAAAAACTTGATGTCGAGAATGGGACTGCTGTACGAGCATGTCTTTTTGACGCACAGGTAAAATTTCCGAGCTTGGAGAGACTGGAAATCGATGGGCTAGGGAAGTTGCACACGCTATGGAACAATAAATTTGCTGATCAAGACTCTTTTTGCCAACTCAAAAAAGTTAAAGTTTCATATTGCAATAGTCTGAAAAAGATCTTTCTAGCCTCAGTAGCCAGGCGTCTCCAAAAGCTACATTCACTGGATGTGCAAAATTGTGATGAAGTGGAGGAAATCATTGCTGGTGAACAAGGACTAGAAACAGAGCCTCCTCATTTCGTGTTCCCAAAAGTAACACATGTGAGATTTTTCAATCTGCCCAAACTGAGTAGATTCTATCCTGGGATTATTGCTTCCAAGTGGCCGTTACTCAAACAACTGACCATTCATGGATGTGGAAAAGTGAAGATGTTTGCCGCAGAACTTCCAATTTCTTCAGAAAGACATGAACCGAACCCTCTAATTGAACAATCACTCTTTCTAATTGACAAGGATTCATTCCCCAATTTAGAAGACTTGGAGCTTCAAGTTGCGGGTGAGATTTGGTACGGTCCATCATCATCCCCAGCACACTTCTTTCCCAAATTAAAAACTATTTGCTTTTACAAGTGGGCAGCGTTCTCCAAGCAAGCCGCAATACATTTCCTTGAGAAATTACCGAATCTTGAGGAGATAACAGTGGGCTGGGATGATGTTTCCACGGAAATATTTGTGAATGAAGAAATTAATGGCGGTGAGGTGATACATGCAGTAAAAACTTTGAGGGTCCGTTTCATGTACAATCTCTTGCAATTAGGGAATGGGAACTCTCAAACAGCGGGCCCACTTTTCCCAAACTTGGTCACTCTTGAGGTGGTTGGTTGTGACATGTTAAAGAGTGTAGAGTCGTCCGCAGCAATATCCTTCCGCAATCTAACAACTCTGAGGGTAGTGTGTTGTGATGGATTGGAATACTTGACAAGTTATTCCGTAGCTAAGAGCTTAATGCAACTGACAACACTGCATGTGAGCTTCTGTAAAAGCCTGAGAGCAATTATAGGGGCAAGCAACGAAGATGATCATGATACAGGAGCAACTTGTGAGATTGCTTTCACCCGGTTGCAACATTTGACACTTCATATGCTACCAAGCCTGCAAGGCTTTTGCTCGGGAAATTGCATTGTCAAACTCCCATCCTCAACAGAGTTACATGTCAGTAACTGCCCGATTGAGTTGAAGATTTCTTCTGAAGGGGTCCTGCTCAGTAATCCAAAACCAGAAAGAGTAGAAATAGCAAAACCAGAAATAGCGGAGGAGGTAGATGATAATGGTGACGGAGAAAAAGAAAAAGATGAGGATGTTGGCACGAGTCGCCAAGACATTGAAGATAGACAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1370

Amino Acids

155.05

Weight (kDa)

5.49

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 159 - 319 1e-28 NB-ARC domain
LRR_14 PF23598 538 - 834 7.3e-11 Leucine-rich repeat region
LRR_RPS2 PF23247 763 - 835 4.2e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 778 - 874 8.8e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 918 - 985 1.6e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1089 - 1205 2.7e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1211 - 1313 8.8e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2156
AccI GTMKAC 1 cut(s) 2156
AccII CGCG 2 cut(s) 275, 1810
AclWI GGATC 3 cut(s) 1316, 1329, 2672
AcoI YGGCCR 3 cut(s) 265, 804, 3095
AcsI RAATTY 8 cut(s) 251, 469, 934, 2464, 2627, 2645, 2753, 2819
AcuI CTGAAG 6 cut(s) 1691, 1695, 2213, 2271, 3153, 3981
AcyI GRCGYC 3 cut(s) 1099, 2153, 2914
AdeI CACNNNGTG 2 cut(s) 67, 1910
AfaI GTAC 9 cut(s) 454, 739, 886, 1513, 1595, 2623, 2724, 3281, 3512
AfiI CCNNNNNNNGG 1 cut(s) 3571
AflIII ACRYGT 3 cut(s) 3031, 3600, 3922
AjiI CACGTC 1 cut(s) 1444
AjnI CCWGG 3 cut(s) 1906, 2909, 3073
AleI CACNNNNGTG 1 cut(s) 563
Alw21I GWGCWC 3 cut(s) 318, 1054, 2478
Alw26I GTCTC 5 cut(s) 1080, 1090, 2345, 2764, 2921
AlwI GGATC 3 cut(s) 1316, 1329, 2672
AlwNI CAGNNNCTG 2 cut(s) 2326, 3933
Ama87I CYCGRG 1 cut(s) 3880
AoxI GGCC 5 cut(s) 265, 804, 1481, 3095, 3553
ApaI GGGCCC 1 cut(s) 3557
ApeKI GCWGC 5 cut(s) 14, 106, 1415, 3347, 3626
ApoI RAATTY 8 cut(s) 251, 469, 934, 2464, 2627, 2645, 2753, 2819
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AseI ATTAAT 3 cut(s) 128, 2373, 3459
Asp700I GAANNNNTTC 5 cut(s) 522, 573, 1493, 1851, 2316
AspLEI GCGC 2 cut(s) 277, 1810
AspS9I GGNCC 7 cut(s) 1812, 2218, 3284, 3499, 3553, 3554, 3967
AsuC2I CCSGG 2 cut(s) 442, 3829
AvaI CYCGRG 1 cut(s) 3880
AvaII GGWCC 5 cut(s) 1812, 2218, 3284, 3499, 3967
BaeGI GKGCMC 1 cut(s) 3557
BaeI ACNNNNGTAYC 2 cut(s) 2209, 2242
BamHI GGATCC 1 cut(s) 1321
BanII GRGCYC 4 cut(s) 727, 1054, 2478, 3557
BauI CACGAG 2 cut(s) 1308, 4078
BbsI GAAGAC 6 cut(s) 281, 560, 1749, 1944, 2156, 3252
Bbv12I GWGCWC 3 cut(s) 318, 1054, 2478
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 4 cut(s) 93, 1402, 3359, 3638
BceAI ACGGC 3 cut(s) 280, 791, 3082
BcgI CGANNNNNNTGC 2 cut(s) 1397, 1431
BciT130I CCWGG 3 cut(s) 1908, 2911, 3075
BciVI GTATCC 1 cut(s) 2503
BclI TGATCA 4 cut(s) 163, 373, 2827, 3790
BcnI CCSGG 2 cut(s) 442, 3829
BcoDI GTCTC 5 cut(s) 1080, 1090, 2345, 2764, 2921
BfmI CTRYAG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 2503
BglI GCCNNNNNGGC 2 cut(s) 1107, 3870
BglII AGATCT 2 cut(s) 2246, 2889
BisI GCNGC 8 cut(s) 15, 107, 268, 1416, 3150, 3348, 3366, 3627
BlsI GCNGC 8 cut(s) 16, 108, 269, 1417, 3151, 3349, 3367, 3628
Bme1390I CCNGG 5 cut(s) 442, 1908, 2911, 3075, 3829
Bme18I GGWCC 5 cut(s) 1812, 2218, 3284, 3499, 3967
BmeT110I CYCGRG 1 cut(s) 3880
BmgBI CACGTC 1 cut(s) 1444
BmgT120I GGNCC 7 cut(s) 1812, 2218, 3284, 3499, 3553, 3554, 3967
BmiI GGNNCC 4 cut(s) 1323, 3500, 3555, 3968
BmrFI CCNGG 5 cut(s) 442, 1908, 2911, 3075, 3829
BmrI ACTGGG 1 cut(s) 2669
BmsI GCATC 6 cut(s) 702, 1303, 1436, 1619, 2047, 2675
BmuI ACTGGG 1 cut(s) 2669
BpiI GAAGAC 6 cut(s) 281, 560, 1749, 1944, 2156, 3252
BpmI CTGGAG 2 cut(s) 1172, 2071
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 5 cut(s) 1114, 2428, 3401, 3419, 3602
BpuMI CCSGG 2 cut(s) 442, 3829
Bsa29I ATCGAT 2 cut(s) 2556, 2781
BsaHI GRCGYC 3 cut(s) 1099, 2153, 2914
BsaJI CCNNGG 4 cut(s) 1102, 2221, 3074, 3432
BsaXI ACNNNNNCTCC 6 cut(s) 2069, 2099, 2138, 2168, 2986, 3016
Bsc4I CCNNNNNNNGG 1 cut(s) 3571
Bse1I ACTGG 8 cut(s) 215, 1332, 2088, 2496, 2595, 2664, 2778, 2940
Bse3DI GCAATG 1 cut(s) 2970
BseBI CCWGG 3 cut(s) 1908, 2911, 3075
BseCI ATCGAT 2 cut(s) 2556, 2781
BseDI CCNNGG 4 cut(s) 1102, 2221, 3074, 3432
BseLI CCNNNNNNNGG 1 cut(s) 3571
BseMI GCAATG 1 cut(s) 2970
BseMII CTCAG 9 cut(s) 491, 579, 1476, 1940, 2916, 3050, 3647, 3749, 3988
BseNI ACTGG 8 cut(s) 215, 1332, 2088, 2496, 2595, 2664, 2778, 2940
BseRI GAGGAG 4 cut(s) 371, 2994, 3416, 4040
BseSI GKGCMC 1 cut(s) 3557
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 4 cut(s) 93, 1402, 3359, 3638
BseYI CCCAGC 3 cut(s) 1624, 3298, 3417
Bsh1236I CGCG 2 cut(s) 275, 1810
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 267, 806, 1483, 3097, 3555
BshVI ATCGAT 2 cut(s) 2556, 2781
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 3 cut(s) 318, 1054, 2478
BsiHKCI CYCGRG 1 cut(s) 3880
BsiSI CCGG 3 cut(s) 24, 441, 3829
BslFI GGGAC 1 cut(s) 2728
BslI CCNNNNNNNGG 1 cut(s) 3571
BsmAI GTCTC 5 cut(s) 1080, 1090, 2345, 2764, 2921
BsmBI CGTCTC 3 cut(s) 1090, 2345, 2921
BsmFI GGGAC 1 cut(s) 2728
BsmI GAATGC 3 cut(s) 232, 1395, 1571
BsnI GGCC 5 cut(s) 267, 806, 1483, 3097, 3555
BsoBI CYCGRG 1 cut(s) 3880
Bsp120I GGGCCC 1 cut(s) 3553
Bsp1286I GDGCHC 5 cut(s) 318, 727, 1054, 2478, 3557
Bsp1407I TGTACA 2 cut(s) 1593, 3510
BspANI GGCC 5 cut(s) 267, 806, 1483, 3097, 3555
BspCNI CTCAG 9 cut(s) 492, 580, 1477, 1941, 2915, 3051, 3648, 3750, 3987
BspDI ATCGAT 2 cut(s) 2556, 2781
BspFNI CGCG 2 cut(s) 275, 1810
BspHI TCATGA 1 cut(s) 3793
BspLI GGNNCC 4 cut(s) 1323, 3500, 3555, 3968
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 3 cut(s) 1316, 1329, 2672
BsrDI GCAATG 1 cut(s) 2970
BsrGI TGTACA 2 cut(s) 1593, 3510
BsrI ACTGG 8 cut(s) 215, 1332, 2088, 2496, 2595, 2664, 2778, 2940
BssECI CCNNGG 4 cut(s) 1102, 2221, 3074, 3432
BssNI GRCGYC 3 cut(s) 1099, 2153, 2914
BssSI CACGAG 2 cut(s) 1308, 4078
BssT1I CCWWGG 1 cut(s) 1102
Bst2BI CACGAG 2 cut(s) 1308, 4078
Bst2UI CCWGG 3 cut(s) 1908, 2911, 3075
Bst6I CTCTTC 5 cut(s) 915, 1710, 2126, 2237, 2508
BstACI GRCGYC 3 cut(s) 1099, 2153, 2914
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstAUI TGTACA 2 cut(s) 1593, 3510
BstC8I GCNNGC 5 cut(s) 2199, 3363, 3553, 3778, 3866
BstDSI CCRYGG 2 cut(s) 2221, 3432
BstFNI CGCG 2 cut(s) 275, 1810
BstHHI GCGC 2 cut(s) 277, 1810
BstMAI GTCTC 5 cut(s) 1080, 1090, 2345, 2764, 2921
BstMCI CGRYCG 1 cut(s) 268
BstNI CCWGG 3 cut(s) 1908, 2911, 3075
BstNSI RCATGY 7 cut(s) 1385, 2733, 3035, 3482, 3604, 3740, 3926
BstSCI CCNGG 5 cut(s) 440, 1906, 2909, 3073, 3827
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 3557
BstUI CGCG 2 cut(s) 275, 1810
BstV1I GCAGC 4 cut(s) 93, 1402, 3359, 3638
BstV2I GAAGAC 6 cut(s) 281, 560, 1749, 1944, 2156, 3252
BstX2I RGATCY 3 cut(s) 1321, 2246, 2889
BstXI CCANNNNNNTGG 2 cut(s) 565, 2095
BstYI RGATCY 3 cut(s) 1321, 2246, 2889
BstZI CGGCCG 1 cut(s) 265
Bsu15I ATCGAT 2 cut(s) 2556, 2781
BsuI GTATCC 1 cut(s) 2503
BsuRI GGCC 5 cut(s) 267, 806, 1483, 3097, 3555
BsuTUI ATCGAT 2 cut(s) 2556, 2781
BtgI CCRYGG 2 cut(s) 2221, 3432
BtgZI GCGATG 1 cut(s) 2136
BtrI CACGTC 1 cut(s) 1444
BtsI GCAGTG 1 cut(s) 3731
BtsIMutI CAGTG 6 cut(s) 1325, 1372, 1946, 2933, 3417, 3731
Cac8I GCNNGC 5 cut(s) 2199, 3363, 3553, 3778, 3866
CaiI CAGNNNCTG 2 cut(s) 2326, 3933
CciI TCATGA 1 cut(s) 3793
CfoI GCGC 2 cut(s) 277, 1810
Cfr13I GGNCC 7 cut(s) 1812, 2218, 3284, 3499, 3553, 3554, 3967
ClaI ATCGAT 2 cut(s) 2556, 2781
CseI GACGC 3 cut(s) 1107, 2750, 2903
CsiI ACCWGGT 1 cut(s) 1906
Csp6I GTAC 9 cut(s) 453, 738, 885, 1512, 1594, 2622, 2723, 3280, 3511
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviQI GTAC 9 cut(s) 453, 738, 885, 1512, 1594, 2622, 2723, 3280, 3511
DraI TTTAAA 2 cut(s) 915, 1501
DraIII CACNNNGTG 2 cut(s) 67, 1910
EaeI YGGCCR 3 cut(s) 265, 804, 3095
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 5 cut(s) 915, 1710, 2126, 2237, 2508
EarI CTCTTC 5 cut(s) 915, 1710, 2126, 2237, 2508
EciI GGCGGA 1 cut(s) 368
Ecl136II GAGCTC 2 cut(s) 1052, 2476
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 1102
Eco24I GRGCYC 4 cut(s) 727, 1054, 2478, 3557
Eco32I GATATC 3 cut(s) 1372, 1778, 2560
Eco47I GGWCC 5 cut(s) 1812, 2218, 3284, 3499, 3967
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 2 cut(s) 1052, 2476
Eco57I CTGAAG 6 cut(s) 1691, 1695, 2213, 2271, 3153, 3981
Eco88I CYCGRG 1 cut(s) 3880
EcoICRI GAGCTC 2 cut(s) 1052, 2476
EcoO109I RGGNCCY 1 cut(s) 3967
EcoRI GAATTC 2 cut(s) 251, 469
EcoRII CCWGG 3 cut(s) 1906, 2909, 3073
EcoRV GATATC 3 cut(s) 1372, 1778, 2560
EcoT14I CCWWGG 1 cut(s) 1102
EcoT22I ATGCAT 3 cut(s) 1318, 1383, 1395
EcoT38I GRGCYC 4 cut(s) 727, 1054, 2478, 3557
ErhI CCWWGG 1 cut(s) 1102
Esp3I CGTCTC 3 cut(s) 1090, 2345, 2921
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 2728
FauI CCCGC 3 cut(s) 827, 3259, 3544
FauNDI CATATG 3 cut(s) 403, 2414, 3852
FbaI TGATCA 4 cut(s) 163, 373, 2827, 3790
FblI GTMKAC 1 cut(s) 2156
Fnu4HI GCNGC 8 cut(s) 15, 107, 268, 1416, 3150, 3348, 3366, 3627
FriOI GRGCYC 4 cut(s) 727, 1054, 2478, 3557
Fsp4HI GCNGC 8 cut(s) 15, 107, 268, 1416, 3150, 3348, 3366, 3627
GlaI GCGC 2 cut(s) 276, 1809
GluI GCNGC 8 cut(s) 15, 107, 268, 1416, 3150, 3348, 3366, 3627
GsaI CCCAGC 3 cut(s) 1628, 3302, 3421
GsuI CTGGAG 2 cut(s) 1172, 2071
HaeIII GGCC 5 cut(s) 267, 806, 1483, 3097, 3555
HapII CCGG 3 cut(s) 24, 441, 3829
HgaI GACGC 3 cut(s) 1107, 2750, 2903
HhaI GCGC 2 cut(s) 277, 1810
Hin1I GRCGYC 3 cut(s) 1099, 2153, 2914
Hin6I GCGC 2 cut(s) 275, 1808
HinP1I GCGC 2 cut(s) 275, 1808
HincII GTYRAC 2 cut(s) 846, 2157
HindII GTYRAC 2 cut(s) 846, 2157
HindIII AAGCTT 1 cut(s) 1337
HpaII CCGG 3 cut(s) 24, 441, 3829
Hpy166II GTNNAC 6 cut(s) 42, 738, 846, 887, 2157, 2981
Hpy8I GTNNAC 6 cut(s) 42, 738, 846, 887, 2157, 2981
Hpy99I CGWCG 2 cut(s) 812, 2158
HpyAV CCTTC 6 cut(s) 115, 173, 208, 2374, 3646, 3956
HpyCH4IV ACGT 5 cut(s) 780, 1443, 1730, 1956, 2153
HpySE526I ACGT 5 cut(s) 780, 1443, 1730, 1956, 2153
Hsp92I GRCGYC 3 cut(s) 1099, 2153, 2914
HspAI GCGC 2 cut(s) 275, 1808
Ksp22I TGATCA 4 cut(s) 163, 373, 2827, 3790
LmnI GCTCC 5 cut(s) 321, 2206, 2473, 3253, 3803
Lsp1109I GCAGC 4 cut(s) 93, 1402, 3359, 3638
LweI GCATC 6 cut(s) 702, 1303, 1436, 1619, 2047, 2675
MabI ACCWGGT 1 cut(s) 1906
MaeII ACGT 5 cut(s) 780, 1443, 1730, 1956, 2153
MfeI CAATTG 5 cut(s) 18, 54, 474, 993, 1169
MflI RGATCY 3 cut(s) 1321, 2246, 2889
MhlI GDGCHC 5 cut(s) 318, 727, 1054, 2478, 3557
MlyI GAGTC 7 cut(s) 198, 495, 703, 754, 2828, 3626, 4090
MmeI TCCRAC 9 cut(s) 790, 855, 1734, 1753, 1839, 1848, 1905, 2556, 2565
Mph1103I ATGCAT 3 cut(s) 1318, 1383, 1395
MroXI GAANNNNTTC 5 cut(s) 522, 573, 1493, 1851, 2316
MslI CAYNNNNRTG 2 cut(s) 563, 3126
MspA1I CMGCKG 1 cut(s) 3551
MspI CCGG 3 cut(s) 24, 441, 3829
MspR9I CCNGG 5 cut(s) 442, 1908, 2911, 3075, 3829
MunI CAATTG 5 cut(s) 18, 54, 474, 993, 1169
Mva1269I GAATGC 3 cut(s) 232, 1395, 1571
MvaI CCWGG 3 cut(s) 1908, 2911, 3075
MvnI CGCG 2 cut(s) 275, 1810
NciI CCSGG 2 cut(s) 442, 3829
NdeI CATATG 3 cut(s) 403, 2414, 3852
NlaIV GGNNCC 4 cut(s) 1323, 3500, 3555, 3968
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 6 cut(s) 1689, 2423, 2638, 3574, 3596, 4043
NsiI ATGCAT 3 cut(s) 1318, 1383, 1395
NspI RCATGY 7 cut(s) 1385, 2733, 3035, 3482, 3604, 3740, 3926
OliI CACNNNNGTG 1 cut(s) 563
PagI TCATGA 1 cut(s) 3793
PciI ACATGT 3 cut(s) 3031, 3600, 3922
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 2205
PctI GAATGC 3 cut(s) 232, 1395, 1571
PdmI GAANNNNTTC 5 cut(s) 522, 573, 1493, 1851, 2316
PkrI GCNGC 8 cut(s) 16, 108, 269, 1417, 3151, 3349, 3367, 3628
PleI GAGTC 7 cut(s) 197, 494, 703, 754, 2828, 3625, 4089
PpsI GAGTC 7 cut(s) 197, 494, 703, 754, 2828, 3625, 4089
PpuMI RGGWCCY 1 cut(s) 3967
PscI ACATGT 3 cut(s) 3031, 3600, 3922
PshBI ATTAAT 3 cut(s) 128, 2373, 3459
Psp124BI GAGCTC 2 cut(s) 1054, 2478
Psp5II RGGWCCY 1 cut(s) 3967
Psp6I CCWGG 3 cut(s) 1906, 2909, 3073
PspFI CCCAGC 3 cut(s) 1624, 3298, 3417
PspGI CCWGG 3 cut(s) 1906, 2909, 3073
PspN4I GGNNCC 4 cut(s) 1323, 3500, 3555, 3968
PspOMI GGGCCC 1 cut(s) 3553
PspPI GGNCC 7 cut(s) 1812, 2218, 3284, 3499, 3553, 3554, 3967
PspPPI RGGWCCY 1 cut(s) 3967
PstI CTGCAG 1 cut(s) 111
PstNI CAGNNNCTG 2 cut(s) 2326, 3933
PsuI RGATCY 3 cut(s) 1321, 2246, 2889
RsaI GTAC 9 cut(s) 454, 739, 886, 1513, 1595, 2623, 2724, 3281, 3512
RsaNI GTAC 9 cut(s) 453, 738, 885, 1512, 1594, 2622, 2723, 3280, 3511
RseI CAYNNNNRTG 2 cut(s) 563, 3126
SacI GAGCTC 2 cut(s) 1054, 2478
SalI GTCGAC 1 cut(s) 2155
SatI GCNGC 8 cut(s) 15, 107, 268, 1416, 3150, 3348, 3366, 3627
Sau96I GGNCC 7 cut(s) 1812, 2218, 3284, 3499, 3553, 3554, 3967
SchI GAGTC 7 cut(s) 198, 495, 703, 754, 2828, 3626, 4090
ScrFI CCNGG 5 cut(s) 442, 1908, 2911, 3075, 3829
SduI GDGCHC 5 cut(s) 318, 727, 1054, 2478, 3557
SexAI ACCWGGT 1 cut(s) 1906
SfaNI GCATC 6 cut(s) 702, 1303, 1436, 1619, 2047, 2675
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 5 cut(s) 1812, 2218, 3284, 3499, 3967
SmiMI CAYNNNNRTG 2 cut(s) 563, 3126
SmlI CTYRAG 5 cut(s) 1093, 2407, 3380, 3398, 3581
SmoI CTYRAG 5 cut(s) 1093, 2407, 3380, 3398, 3581
SspI AATATT 4 cut(s) 1072, 1537, 2065, 3441
SstI GAGCTC 2 cut(s) 1054, 2478
StyD4I CCNGG 5 cut(s) 440, 1906, 2909, 3073, 3827
StyI CCWWGG 1 cut(s) 1102
TaiI ACGT 5 cut(s) 783, 1446, 1733, 1959, 2156
TaqI TCGA 7 cut(s) 192, 325, 1855, 2156, 2556, 2706, 2781
TatI WGTACW 5 cut(s) 452, 737, 1593, 2621, 3510
TauI GCSGC 3 cut(s) 270, 3152, 3368
TscAI CASTG 6 cut(s) 1332, 1372, 1953, 2940, 3417, 3738
TseFI GTSAC 6 cut(s) 1689, 2423, 2638, 3574, 3596, 4043
TseI GCWGC 5 cut(s) 14, 106, 1415, 3347, 3626
Tsp45I GTSAC 6 cut(s) 1689, 2423, 2638, 3574, 3596, 4043
TspGWI ACGGA 8 cut(s) 308, 2327, 2559, 2669, 3449, 3491, 3691, 4062
TspRI CASTG 6 cut(s) 1332, 1372, 1953, 2940, 3417, 3738
VpaK11BI GGWCC 5 cut(s) 1812, 2218, 3284, 3499, 3967
VspI ATTAAT 3 cut(s) 128, 2373, 3459
XapI RAATTY 8 cut(s) 251, 469, 934, 2464, 2627, 2645, 2753, 2819
XceI RCATGY 7 cut(s) 1385, 2733, 3035, 3482, 3604, 3740, 3926
XcmI CCANNNNNNNNNTGG 2 cut(s) 2114, 2212
XmiI GTMKAC 1 cut(s) 2156
XmnI GAANNNNTTC 5 cut(s) 522, 573, 1493, 1851, 2316
ZraI GACGTC 1 cut(s) 2154
Zsp2I ATGCAT 3 cut(s) 1318, 1383, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.