Rw0G003970

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00150
OG0000042
Physical Location & Seq
Reverse (-)
13603 .. 18626
5024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003970.1

Sequence Viewer

Length: 2130 bp
ATGGTTAGTAGTCTTCAGCAGTTAATGCATCTGAAAGTGGTCGACTGCGGAGTGGAAGAAATCCTTGCAAATGAAGAGGGACTACAAACAACACATGAGTTTGTGTTCTCAAAAGTAAACTCTGTTACATTTGAGGATTTGCCCCATTTGAGGTGTTTCTATCCCAAAATACATGCTTCCAGGTGGCCGTCACTTGAAGCTTTGGTGATACTAAATTGCTATAAACTTGAGAGAAACTGTGAGTCAACAAATCCTACTCCAACTGACAAAGCTCTTTTTCTAATTAAGAAGGATTCATTCCCCAATTTGAAAACAGTGAACGTGTACGGCATGGAGATTTGGAATGGTTCATTCCCAACAAAGTTCTTTAGCAAACTAGAAGAATTTCAATTCGGTAACCAAGACTGCGAGTCAGCCGCTGTACTTGAGAAATTCCTTGATCTCGACAAACCCAGTGTAACGAGTTTTGCTCATTCGAATGAAATATCTTTCCATGAAAAAAGCCGTAGTGGGGATATAAATGTGGTTGGGGCCCTCCCTCATTTAAGGGATTTGTGGCTTTATGGCATGTCGGAGCTGATGCATCTAGGAGAAGATAATACTCAATCAGCAGGCCAAAATTTTCCAAACCTGGAAGTTCTGGGAATAGTGATGTGTGGTAGCTTAAGGAGTCTTAGATCATCAGCGATATCCTTCAAGAATCTGACAAATTTGCAAGTACTTAATTGTCCGGGATTGGAATACTTGATAAATTACTCCACAGCTAAAAGTTTCATGCAACTCACACACCTGATAGTTGAGGATTGTGCAAGATTGGTAGAAATAGTGGGAAGTACAAAAGAAGACGACGATTTAGGAAATGAGATTGTATTCGCCCAGTTGAAATATCTGAAACTTTCTACCCTACCAAGATTGCAAGGGTTTTGCTCTGGAGATTGCATTATCAAATTCCCATCTTTGGAAACTTTATTCATGAGCAAACGCCTCAAATTAAAGATTTTTCAAAATGATGAACGTGTTTCATCACTGCAGATAACAGACGAAAATGTTGACACAGACGTTGATGCTGATGACGGCAAAACGGTAACAAAGGAAAAGGTCGACATAGATGCTGGTGCTGGTAGTGAACAAATTGATGAAACTACACAGATAACAAACAAAAACGAAGACGCAAACATTGATGGATCGGAACATGTTCAGCCCCTTGAGACCACTGCGACTGATCAGGGGGTCATAACACCAGTGGAAGAAAATCTGGCCATCATACCAGTAGGCGAAGTCACAACTCCTGTGTTCCCAGTCATCAAGTCTGCTCCTGTCGCCGAAGTACCTCATACTGAAGAAGTTGGGGAACAAGCATTCTCAGGCCAGAACCTAAAAACTCTAGGTGAAGAAGCAAGGCCTGATGTTCATCAGACTCCCAATGCACCTGAGCAGCCTGTTGAGGAACAAAGTGATCCCTTGGAGCCTTCAGCTGCTGCTACAGGAGCTCCAACACCTACCATTCCTGCATTGCCTCCTCCAAGTTCTCTGAAGTCATCTGGGGTGAAACGATCCTTGAGAGAGAAACTTCAAGCTCTGTCTGCCAAAAAGGCTGCTAGCACTCAAAGCTCTTATTGCTCTGCTGACTTGAAAGACCCCCACACCAGACAACAGCTCTTGGCAGTGCTGCCCACTCTCCAACTGTCTACTACCAAATGGATTGCTGATCTCGCTATTCAAGAGCTATCGAAGTTACCACTGGTCCTCGACAAGGAGGAATCCTTATGCCAAGAATTGGTTGCTCTTAAAGCTCAGGGCTCCAAGCTTGATGTAAGGGGTCACATACTCCTCTCTGAAGGCTCCTTAGCTGAAGAAAACATCCAGAAGGTTCAGGAGCAGAAGGTGGCGCTGCTGGCTCTGGAAGAACAAATCAAGAAGCTTGAGGCGCGAGCAACTTCACTCCGGGCTGAGATCGCCCTTGGCGAAAAGAGGAATTCTGGTTTTGAAGTGTCCTTGGATCAGCTAGTTGAGGAACATCAACTCAACCAACTCTCTGTGGATTCAACAAGCCAAGAGTTGCTTAGGACTCGAGCTGTGAGTGACAACTTATGCACTTCCATCTTTACTTATCTCCGCCAGCTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

709

Amino Acids

78.33

Weight (kDa)

4.88

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 104 - 226 5.9e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 228 - 324 2.7e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1777
AccI GTMKAC 3 cut(s) 42, 1101, 1688
AccII CGCG 1 cut(s) 1930
AciI CCGC 3 cut(s) 48, 417, 2116
AclWI GGATC 4 cut(s) 1192, 1451, 1548, 2007
AcoI YGGCCR 2 cut(s) 185, 1257
AcsI RAATTY 6 cut(s) 383, 431, 619, 709, 947, 1975
AcuI CTGAAG 5 cut(s) 1359, 1455, 1553, 1857, 1872
AfaI GTAC 5 cut(s) 326, 423, 720, 835, 1329
AfiI CCNNNNNNNGG 5 cut(s) 150, 511, 958, 1753, 1777
AflII CTTAAG 1 cut(s) 664
AflIII ACRYGT 3 cut(s) 321, 1015, 1192
AhdI GACNNNNNGTC 1 cut(s) 409
AjnI CCWGG 2 cut(s) 179, 630
Alw21I GWGCWC 1 cut(s) 1492
Alw26I GTCTC 1 cut(s) 1202
AlwI GGATC 4 cut(s) 1192, 1451, 1548, 2007
AlwNI CAGNNNCTG 2 cut(s) 419, 1478
Ama87I CYCGRG 1 cut(s) 2070
AoxI GGCC 6 cut(s) 185, 531, 613, 1257, 1366, 1400
ApaI GGGCCC 1 cut(s) 535
ApeKI GCWGC 6 cut(s) 1435, 1475, 1478, 1595, 1669, 1891
ApoI RAATTY 6 cut(s) 383, 431, 619, 709, 947, 1975
Asp700I GAANNNNTTC 2 cut(s) 384, 1194
AspLEI GCGC 2 cut(s) 1891, 1930
AspS9I GGNCC 3 cut(s) 531, 532, 1744
AsuC2I CCSGG 2 cut(s) 732, 1946
AsuHPI GGTGA 3 cut(s) 217, 1400, 1558
AsuII TTCGAA 1 cut(s) 476
AsuNHI GCTAGC 1 cut(s) 1598
AvaI CYCGRG 1 cut(s) 2070
AvaII GGWCC 1 cut(s) 1744
BaeGI GKGCMC 1 cut(s) 535
BalI TGGCCA 1 cut(s) 1259
BanII GRGCYC 3 cut(s) 535, 1492, 1802
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BbsI GAAGAC 3 cut(s) 5, 849, 1173
Bbv12I GWGCWC 1 cut(s) 1492
BbvI GCAGC 6 cut(s) 1447, 1462, 1465, 1582, 1656, 1878
BccI CCATC 4 cut(s) 961, 1175, 1268, 2108
BceAI ACGGC 4 cut(s) 172, 343, 489, 1090
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 2 cut(s) 181, 632
BclI TGATCA 1 cut(s) 1222
BcnI CCSGG 2 cut(s) 732, 1946
BcoDI GTCTC 1 cut(s) 1202
BfaI CTAG 5 cut(s) 377, 587, 1385, 1599, 2006
BfmI CTRYAG 2 cut(s) 1028, 1482
BfoI RGCGCY 1 cut(s) 1892
BfrI CTTAAG 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 1592
BisI GCNGC 7 cut(s) 417, 1436, 1476, 1479, 1596, 1670, 1892
BlsI GCNGC 7 cut(s) 418, 1437, 1477, 1480, 1597, 1671, 1893
BmcAI AGTACT 1 cut(s) 720
Bme1390I CCNGG 4 cut(s) 181, 632, 732, 1946
Bme18I GGWCC 1 cut(s) 1744
BmeRI GACNNNNNGTC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 2070
BmgT120I GGNCC 3 cut(s) 531, 532, 1744
BmiI GGNNCC 5 cut(s) 532, 533, 1467, 1801, 1843
BmrFI CCNGG 4 cut(s) 181, 632, 732, 1946
BmrI ACTGGG 3 cut(s) 447, 871, 1292
BmsI GCATC 5 cut(s) 37, 570, 592, 1054, 1099
BmtI GCTAGC 1 cut(s) 1602
BmuI ACTGGG 3 cut(s) 447, 871, 1292
BpiI GAAGAC 3 cut(s) 5, 849, 1173
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 4 cut(s) 1431, 1794, 1846, 2063
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 5 cut(s) 248, 446, 1226, 1579, 1943
BpuMI CCSGG 2 cut(s) 732, 1946
BsaBI GATNNNNATC 1 cut(s) 1410
BsaI GGTCTC 1 cut(s) 1202
BsaJI CCNNGG 3 cut(s) 1461, 1960, 1995
BsaXI ACNNNNNCTCC 2 cut(s) 1474, 1504
Bsc4I CCNNNNNNNGG 5 cut(s) 150, 511, 958, 1753, 1777
Bse1I ACTGG 6 cut(s) 453, 877, 1241, 1268, 1298, 1746
Bse3DI GCAATG 1 cut(s) 1511
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 2 cut(s) 181, 632
BseDI CCNNGG 3 cut(s) 1461, 1960, 1995
BseGI GGATG 1 cut(s) 1860
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 5 cut(s) 150, 511, 958, 1753, 1777
BseMI GCAATG 1 cut(s) 1511
BseMII CTCAG 4 cut(s) 1377, 1422, 1808, 1941
BseNI ACTGG 6 cut(s) 453, 877, 1241, 1268, 1298, 1746
BseRI GAGGAG 2 cut(s) 1509, 1820
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 6 cut(s) 1447, 1462, 1465, 1582, 1656, 1878
Bsh1236I CGCG 1 cut(s) 1930
BshFI GGCC 6 cut(s) 187, 533, 615, 1259, 1368, 1402
BsiHKAI GWGCWC 1 cut(s) 1492
BsiHKCI CYCGRG 1 cut(s) 2070
BsiSI CCGG 2 cut(s) 731, 1945
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 5 cut(s) 150, 511, 958, 1753, 1777
BsmAI GTCTC 1 cut(s) 1202
BsmFI GGGAC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 1358
BsnI GGCC 6 cut(s) 187, 533, 615, 1259, 1368, 1402
Bso31I GGTCTC 1 cut(s) 1202
BsoBI CYCGRG 1 cut(s) 2070
Bsp119I TTCGAA 1 cut(s) 476
Bsp120I GGGCCC 1 cut(s) 531
Bsp1286I GDGCHC 3 cut(s) 535, 1492, 1802
Bsp143I GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
BspACI CCGC 3 cut(s) 48, 417, 2116
BspANI GGCC 6 cut(s) 187, 533, 615, 1259, 1368, 1402
BspCNI CTCAG 4 cut(s) 1376, 1423, 1807, 1942
BspFNI CGCG 1 cut(s) 1930
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 5 cut(s) 532, 533, 1467, 1801, 1843
BspMAI CTGCAG 1 cut(s) 1032
BspOI GCTAGC 1 cut(s) 1602
BspPI GGATC 4 cut(s) 1192, 1451, 1548, 2007
BspT104I TTCGAA 1 cut(s) 476
BspTI CTTAAG 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 1202
BsrDI GCAATG 1 cut(s) 1511
BsrI ACTGG 6 cut(s) 453, 877, 1241, 1268, 1298, 1746
BssECI CCNNGG 3 cut(s) 1461, 1960, 1995
BssMI GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
BssT1I CCWWGG 3 cut(s) 1461, 1960, 1995
Bst2UI CCWGG 2 cut(s) 181, 632
Bst4CI ACNGT 4 cut(s) 239, 316, 1084, 1686
Bst6I CTCTTC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 664
BstAPI GCANNNNNTGC 1 cut(s) 25
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 5 cut(s) 613, 1600, 1896, 1932, 2120
BstDEI CTNAG 7 cut(s) 674, 1363, 1431, 1794, 1846, 1950, 2063
BstEII GGTNACC 1 cut(s) 395
BstENI CCTNNNNNAGG 1 cut(s) 1751
BstF5I GGATG 1 cut(s) 1860
BstFNI CGCG 1 cut(s) 1930
BstH2I RGCGCY 1 cut(s) 1892
BstHHI GCGC 2 cut(s) 1891, 1930
BstKTI GATC 9 cut(s) 442, 680, 1187, 1225, 1459, 1556, 1711, 1956, 2002
BstMAI GTCTC 1 cut(s) 1202
BstMBI GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
BstNI CCWGG 2 cut(s) 181, 632
BstNSI RCATGY 3 cut(s) 176, 571, 1196
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 4 cut(s) 179, 630, 730, 1944
BstSFI CTRYAG 2 cut(s) 1028, 1482
BstSLI GKGCMC 1 cut(s) 535
BstUI CGCG 1 cut(s) 1930
BstV1I GCAGC 6 cut(s) 1447, 1462, 1465, 1582, 1656, 1878
BstV2I GAAGAC 3 cut(s) 5, 849, 1173
BsuRI GGCC 6 cut(s) 187, 533, 615, 1259, 1368, 1402
BtsCI GGATG 1 cut(s) 1860
BtsI GCAGTG 3 cut(s) 1025, 1212, 1671
BtsIMutI CAGTG 7 cut(s) 321, 460, 1025, 1212, 1248, 1671, 1739
Cac8I GCNNGC 5 cut(s) 613, 1600, 1896, 1932, 2120
CaiI CAGNNNCTG 2 cut(s) 419, 1478
CciI TCATGA 1 cut(s) 972
CfoI GCGC 2 cut(s) 1891, 1930
Cfr13I GGNCC 3 cut(s) 531, 532, 1744
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 5 cut(s) 325, 422, 719, 834, 1328
CviAII CATG 8 cut(s) 95, 173, 331, 494, 568, 775, 973, 1193
CviQI GTAC 5 cut(s) 325, 422, 719, 834, 1328
DdeI CTNAG 7 cut(s) 674, 1363, 1431, 1794, 1846, 1950, 2063
DpnI GATC 9 cut(s) 441, 679, 1186, 1224, 1458, 1555, 1710, 1955, 2001
DpnII GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
DriI GACNNNNNGTC 1 cut(s) 409
EaeI YGGCCR 2 cut(s) 185, 1257
Eam1104I CTCTTC 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 2105
Ecl136II GAGCTC 1 cut(s) 1490
Eco130I CCWWGG 3 cut(s) 1461, 1960, 1995
Eco147I AGGCCT 1 cut(s) 1402
Eco24I GRGCYC 3 cut(s) 535, 1492, 1802
Eco31I GGTCTC 1 cut(s) 1202
Eco32I GATATC 1 cut(s) 690
Eco47I GGWCC 1 cut(s) 1744
Eco53kI GAGCTC 1 cut(s) 1490
Eco57I CTGAAG 5 cut(s) 1359, 1455, 1553, 1857, 1872
Eco88I CYCGRG 1 cut(s) 2070
Eco91I GGTNACC 1 cut(s) 395
EcoICRI GAGCTC 1 cut(s) 1490
EcoNI CCTNNNNNAGG 1 cut(s) 1751
EcoO109I RGGNCCY 2 cut(s) 531, 532
EcoO65I GGTNACC 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 1975
EcoRII CCWGG 2 cut(s) 179, 630
EcoRV GATATC 1 cut(s) 690
EcoT14I CCWWGG 3 cut(s) 1461, 1960, 1995
EcoT22I ATGCAT 2 cut(s) 30, 585
EcoT38I GRGCYC 3 cut(s) 535, 1492, 1802
ErhI CCWWGG 3 cut(s) 1461, 1960, 1995
FaeI CATG 8 cut(s) 98, 176, 334, 497, 571, 778, 976, 1196
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 2046, 2078
FaqI GGGAC 1 cut(s) 93
FatI CATG 8 cut(s) 94, 172, 330, 493, 567, 774, 972, 1192
FbaI TGATCA 1 cut(s) 1222
FblI GTMKAC 3 cut(s) 42, 1101, 1688
Fnu4HI GCNGC 7 cut(s) 417, 1436, 1476, 1479, 1596, 1670, 1892
FokI GGATG 1 cut(s) 1847
FriOI GRGCYC 3 cut(s) 535, 1492, 1802
Fsp4HI GCNGC 7 cut(s) 417, 1436, 1476, 1479, 1596, 1670, 1892
FspBI CTAG 5 cut(s) 377, 587, 1385, 1599, 2006
GlaI GCGC 2 cut(s) 1890, 1929
GluI GCNGC 7 cut(s) 417, 1436, 1476, 1479, 1596, 1670, 1892
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 1892
HaeIII GGCC 6 cut(s) 187, 533, 615, 1259, 1368, 1402
HapII CCGG 2 cut(s) 731, 1945
HgaI GACGC 1 cut(s) 1178
HhaI GCGC 2 cut(s) 1891, 1930
Hin1II CATG 8 cut(s) 98, 176, 334, 497, 571, 778, 976, 1196
Hin6I GCGC 2 cut(s) 1889, 1928
HinP1I GCGC 2 cut(s) 1889, 1928
HincII GTYRAC 4 cut(s) 43, 246, 1051, 1102
HindII GTYRAC 4 cut(s) 43, 246, 1051, 1102
HindIII AAGCTT 3 cut(s) 198, 1805, 1919
HinfI GANTC 9 cut(s) 242, 293, 410, 670, 700, 1417, 1760, 2042, 2068
HpaII CCGG 2 cut(s) 731, 1945
HphI GGTGA 3 cut(s) 217, 1400, 1558
Hpy166II GTNNAC 9 cut(s) 43, 118, 246, 319, 325, 1051, 1102, 1127, 1689
Hpy188I TCNGA 8 cut(s) 33, 574, 705, 891, 1189, 1416, 1533, 1837
Hpy188III TCNNGA 9 cut(s) 443, 697, 930, 973, 1721, 1864, 1874, 1901, 1915
Hpy8I GTNNAC 9 cut(s) 43, 118, 246, 319, 325, 1051, 1102, 1127, 1689
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 6 cut(s) 283, 703, 1479, 1832, 1861, 1876
HpyCH4III ACNGT 4 cut(s) 239, 316, 1084, 1686
HpyCH4IV ACGT 3 cut(s) 321, 1015, 1059
HpyF3I CTNAG 7 cut(s) 674, 1363, 1431, 1794, 1846, 1950, 2063
HpySE526I ACGT 3 cut(s) 321, 1015, 1059
Hsp92II CATG 8 cut(s) 98, 176, 334, 497, 571, 778, 976, 1196
HspAI GCGC 2 cut(s) 1889, 1928
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
LmnI GCTCC 8 cut(s) 574, 1318, 1465, 1487, 1495, 1805, 1847, 1876
Lsp1109I GCAGC 6 cut(s) 1447, 1462, 1465, 1582, 1656, 1878
LweI GCATC 5 cut(s) 37, 570, 592, 1054, 1099
MaeI CTAG 5 cut(s) 377, 587, 1385, 1599, 2006
MaeII ACGT 3 cut(s) 321, 1015, 1059
MaeIII GTNAC 9 cut(s) 124, 189, 395, 457, 1084, 1279, 1734, 1820, 2081
MalI GATC 9 cut(s) 441, 679, 1186, 1224, 1458, 1555, 1710, 1955, 2001
MboI GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
MhlI GDGCHC 3 cut(s) 535, 1492, 1802
MlsI TGGCCA 1 cut(s) 1259
MluNI TGGCCA 1 cut(s) 1259
MlyI GAGTC 5 cut(s) 251, 419, 679, 1411, 2062
MmeI TCCRAC 4 cut(s) 284, 552, 1517, 1705
Mox20I TGGCCA 1 cut(s) 1259
Mph1103I ATGCAT 2 cut(s) 30, 585
MroXI GAANNNNTTC 2 cut(s) 384, 1194
MscI TGGCCA 1 cut(s) 1259
MseI TTAA 7 cut(s) 23, 285, 545, 665, 723, 992, 1788
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 1259
MspA1I CMGCKG 2 cut(s) 419, 1475
MspCI CTTAAG 1 cut(s) 664
MspI CCGG 2 cut(s) 731, 1945
MspR9I CCNGG 4 cut(s) 181, 632, 732, 1946
Mva1269I GAATGC 1 cut(s) 1358
MvaI CCWGG 2 cut(s) 181, 632
MvnI CGCG 1 cut(s) 1930
NciI CCSGG 2 cut(s) 732, 1946
NdeII GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
NheI GCTAGC 1 cut(s) 1598
NlaIII CATG 8 cut(s) 98, 176, 334, 497, 571, 778, 976, 1196
NlaIV GGNNCC 5 cut(s) 532, 533, 1467, 1801, 1843
NmuCI GTSAC 4 cut(s) 189, 1279, 1820, 2081
NsiI ATGCAT 2 cut(s) 30, 585
NspI RCATGY 3 cut(s) 176, 571, 1196
NspV TTCGAA 1 cut(s) 476
PaeR7I CTCGAG 1 cut(s) 2070
PagI TCATGA 1 cut(s) 972
PceI AGGCCT 1 cut(s) 1402
PciI ACATGT 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 1 cut(s) 1962
PctI GAATGC 1 cut(s) 1358
PdmI GAANNNNTTC 2 cut(s) 384, 1194
PfeI GAWTC 4 cut(s) 293, 700, 1760, 2042
PflMI CCANNNNNTGG 1 cut(s) 1777
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 7 cut(s) 418, 1437, 1477, 1480, 1597, 1671, 1893
PleI GAGTC 5 cut(s) 250, 418, 678, 1411, 2062
PpsI GAGTC 5 cut(s) 250, 418, 678, 1411, 2062
PscI ACATGT 1 cut(s) 1192
Psp124BI GAGCTC 1 cut(s) 1492
Psp6I CCWGG 2 cut(s) 179, 630
PspEI GGTNACC 1 cut(s) 395
PspGI CCWGG 2 cut(s) 179, 630
PspN4I GGNNCC 5 cut(s) 532, 533, 1467, 1801, 1843
PspOMI GGGCCC 1 cut(s) 531
PspPI GGNCC 3 cut(s) 531, 532, 1744
PspXI VCTCGAGB 1 cut(s) 2070
PstI CTGCAG 1 cut(s) 1032
PstNI CAGNNNCTG 2 cut(s) 419, 1478
PvuII CAGCTG 1 cut(s) 1475
RsaI GTAC 5 cut(s) 326, 423, 720, 835, 1329
RsaNI GTAC 5 cut(s) 325, 422, 719, 834, 1328
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 1492
SalI GTCGAC 2 cut(s) 41, 1100
SaqAI TTAA 7 cut(s) 23, 285, 545, 665, 723, 992, 1788
SatI GCNGC 7 cut(s) 417, 1436, 1476, 1479, 1596, 1670, 1892
Sau3AI GATC 9 cut(s) 439, 677, 1184, 1222, 1456, 1553, 1708, 1953, 1999
Sau96I GGNCC 3 cut(s) 531, 532, 1744
ScaI AGTACT 1 cut(s) 720
SchI GAGTC 5 cut(s) 251, 419, 679, 1411, 2062
ScrFI CCNGG 4 cut(s) 181, 632, 732, 1946
SduI GDGCHC 3 cut(s) 535, 1492, 1802
SfaNI GCATC 5 cut(s) 37, 570, 592, 1054, 1099
SfcI CTRYAG 2 cut(s) 1028, 1482
Sfr274I CTCGAG 1 cut(s) 2070
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 1744
SlaI CTCGAG 1 cut(s) 2070
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 7 cut(s) 227, 425, 664, 1205, 1558, 1922, 2070
SmoI CTYRAG 7 cut(s) 227, 425, 664, 1205, 1558, 1922, 2070
SseBI AGGCCT 1 cut(s) 1402
SsiI CCGC 3 cut(s) 48, 417, 2116
SspMI CTAG 5 cut(s) 377, 587, 1385, 1599, 2006
SstI GAGCTC 1 cut(s) 1492
StuI AGGCCT 1 cut(s) 1402
StyD4I CCNGG 4 cut(s) 179, 630, 730, 1944
StyI CCWWGG 3 cut(s) 1461, 1960, 1995
TaaI ACNGT 4 cut(s) 239, 316, 1084, 1686
TaiI ACGT 3 cut(s) 324, 1018, 1062
TaqI TCGA 7 cut(s) 42, 444, 476, 1101, 1730, 1749, 2071
TatI WGTACW 3 cut(s) 421, 718, 833
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 4 cut(s) 293, 700, 1760, 2042
Tru1I TTAA 7 cut(s) 23, 285, 545, 665, 723, 992, 1788
Tru9I TTAA 7 cut(s) 23, 285, 545, 665, 723, 992, 1788
TscAI CASTG 7 cut(s) 321, 460, 1032, 1219, 1248, 1671, 1746
TseFI GTSAC 4 cut(s) 189, 1279, 1820, 2081
TseI GCWGC 6 cut(s) 1435, 1475, 1478, 1595, 1669, 1891
Tsp45I GTSAC 4 cut(s) 189, 1279, 1820, 2081
TspRI CASTG 7 cut(s) 321, 460, 1032, 1219, 1248, 1671, 1746
Van91I CCANNNNNTGG 1 cut(s) 1777
Vha464I CTTAAG 1 cut(s) 664
VpaK11BI GGWCC 1 cut(s) 1744
XagI CCTNNNNNAGG 1 cut(s) 1751
XapI RAATTY 6 cut(s) 383, 431, 619, 709, 947, 1975
XceI RCATGY 3 cut(s) 176, 571, 1196
XhoI CTCGAG 1 cut(s) 2070
XmiI GTMKAC 3 cut(s) 42, 1101, 1688
XmnI GAANNNNTTC 2 cut(s) 384, 1194
XspI CTAG 5 cut(s) 377, 587, 1385, 1599, 2006
ZrmI AGTACT 1 cut(s) 720
Zsp2I ATGCAT 2 cut(s) 30, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.