MD09G1272000.v1.1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000042
Physical Location & Seq
Reverse (-)
34804451 .. 34811407
6957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1272000.v1.1.491

Sequence Viewer

Length: 4242 bp
ATGGCGATGGAGATACTCAATGCAATTATTCCTACAATAATTGACTACACAATTAGACCAGTTGCACGCCAAGTGGGTTATATCATTTCCTACAAAAGCAACCTTGAAGATCTAAGGAGTAAATTGGAGAATTTTGATTCTGTCAAACAAAGGATGAAGCATGACGTTGATGAAGTCCGAAGAAAAGTTGATAAAAAACTGGAAGCTGATGTCGAGAAATGGCAGTCAGATGCAGAGAAGACCACTCTGAAGGCAGAAGCACTCTTGCATGATGAAGGCCGTGCAAAGACAAAGTGTCTCATTATATGTCCTAATCTGATATACTATCATCAGCGTAGCAGGAAGTCAACAAAACTGATGGAAAAGATTGAAGCACATGAAAATAAAAAAAAAGGGTTTCAGAGTCTTTTTTACGATGCTCCCGTAGAAGACATATCTGGCATAGCCTCCCACGACTACATGGCCTTTGAATCAAGGATTTCTATGGTGAAGGCTATCATTACGGAACTGAAAAACCCTGATATCAACAGGATTGGGGTGTACGGATTAGGGGGCGTTGGGAAGACAACACTTGCCAAAGAGGTTTACAGAGAAGCTGTGAAAGAGAAGTTATTTGGTAATGTGGTTATAATAATAAATGTCAAAGAAAAAGAAGACAAAAAAATTCAAAGGGAAATTACCGAAAGGTTGGGGATGGACGATGAATCTGAGGATATGGGAAAAAAGGCGAATCTCCTACGAGCCAGGATAAAAGAGGAGCAGACTCTTGTCATTTTCGATGATGTTTTGGAAAGAATTGACTTTGAGGCCATGGGACTTGTTGGTGTGCCGAATTGTAAGTTATTGTTGACATCTAGAGATAGTACAGTTTTATTATCTGATATGCGTACGCAAAAAGAATTTCCACTTGGATTTTTAACAGAAAAAGAAAGTTGGAGTTTGTTTGAGAAGGTGGCAGGTAATGTCGTTAAAGACAACCGTATACTGAAAGAAGCAACCCAACTAGCAAAGAAATGTGGAGGTTTGCCGGTTTTGGTTGTTGCAGTTGCAAGTGCTTTAAAGGATAGTAGTTTGCAGGAATGGAAAGATGCGTTGAAAAGCTTCAAAAGATTTGCCGAGGAAGAATTGCATGAAAAAGCATTCTTGGCTCTAAAGTGGAGTTACAAACGATTGGAAGATCAAGAGCTTCAGCAATTGTTCTTGCTTTGCGGAATTCTTGCAAATGGGGGTAGCACCATTTATGTCTTTTATTTGTTGCACTGTGCTATGGGTTTGGGTTTGGTTGGAAGTGTTGAGACAGTGGAAGAGGCACGGATTTCATTGAATAGAATGGTTAAAAAACTAAAACATTCTTGCCTATTGCTGGACAGTGATGATGATAGGACTGTTAGAATGCATGAGCTTGTACGAGATGTTGCTTTCCGGATCGCATCTGATGATCAAAAGGCCTTTTCAAAAGCAGATGGAGATGAGGTTAAAGAATGGCCCGCTGAGGATTTCCTTGAAAAATGTACAAGGATGTCCTTAATAGGTTGCAAGATCCCCAGGCTTCCTGAAGTACCTTGGGAATGCCCAGAATTAAAATTGTTAATCTTGTCCGATAATTATATGGGCAACTCCCAGGAAATCCCAAGCAAATTTTTTGAAGGGATGAAAGAACTCAAAGTGTTGGATGTCAGCGGAATCCGTATTCCGTCGCTACCTCCGTCTCTTCTATCCCTAAAGTATCTCCACACATTGTGTCTAGATCATTGCGAGTTGGAAGACATAGCTCTTGTTGGACAGCTAACAAACTTGAAAATCCTTAGCCTCTTACAGTCCGAGGTTAAAGAATTGCCCAAAGAAATAAGGCAATTGACTAGCCTACAATTATTGGATTTGACCTGTTGCTCTAAACTTGTTCTGATCCCACCTGATGCTATATCGTGCTTGACAAGACTAGAAGACTTGAGGATGGGAATAAAAAGCTTCAAGCAATGGGAGGGTGAAGGTTTGGTCGACGGCAGAAGTAATGCCAGCGTTTCAGAGCTGAAGCACTTATCTCATCTATCCGCATTGGACGTACACATTCCAGATGCTAACCTTCTTCCAACCAACTTGTTCTCCGATAAGTTAGAAAGATACACCATACTTGTCGGTGATTGTTGGGAGTATCCTAACATCCTTGCAACCTCCTCTAACATGCTAAAACTCAAGCTCACCGGGAGTAATCAGTTCGATCGAGGTATAAAGTTGCTGGTAAAGAGAAGTGAGCAATTGTACTTGGATGGGGTGGAGATAGTGAATATTATTTCCTATCTATTTGACAGTGAAGCTGTTAATCACCTGACGCATCTCCACGTCCAAAACAACGACGAAGTCACATATGTTATTAACTCCGTCAGTTGGAGTTATTCTCAAAATGCCTTCCTCAATCTGGAATCTCTATCTCTTAAAAACATTGTGAGTTTGAAAAGTGTATGTTATGGACAACTCATAGGCAACCCTTTCCAAAAGTTAAAATCTTTGACACTGCAGAATCTACCAAAGCTTATTGGTTTCTCTTCCAAGGGCAAGCAATTAACGAATGATACAAATGCCGACGAAATCGTGTTGGAGGATGAAGCTGGTGGACCACCGAGACTTTTCAATAATGAGGAGGTTTTGATGCCGAACTTAATAAGCTTGACTGTGCATCAATGTGATAGTTTAAGATTCTTGTTTTCAAGTTCTATGGTTAAATGTCTCAGGCAACTCAAGCATCTCAAGATATCCAAATGTCAAGCACTACAAATGGTATATGACACATCAGCTACCACTCAGTTGAATTGTTTTGAGTGCCCAAATCTAAACTCAGTTGAGGTAGACTCGTGTGATAGTTTGAAAAATGTCTTTCCCGCCTCAGTGGCCAAAGATCTTAAGCAACTAAGCAAGTTGATGGTTAAGAATTGTGGTTTAATGGAGGAAATTGTTGCGAAGGAAGGACCACAAACGACATACAAGGAGTTCGGGTTCCCTAAAGTAACATTGATTGAATTTCATAACCTGCCCCAACTTGGGAGTTTCTATCCAGGACTGCATGTTTCTAATTGGCCATCACTCAACTACTTAAAGTTCACGAAATGTGGTGGTGTGGAGATTTTGCCTGCCGAATTTTTAACATATCAAGACAAGCTTGAGTTGGGCTACCCAAAGCCAACTAAACAATCTTTCTTTTTAATTGAGAAGGGTAAGTCATTTTTCAACTTGGAATACTTGATTTTGGACGAGGACACAGAGATTTTGTATGGTCCACTCCTGGCAGAGTTGTTCAGAAAACTAAAAAGAATTGATTTTGCAACTTCACATCCCAAGTCAGATGTTTTCTTTGAGAATTTCCAGAATATTGAAGTGCTCCATGTGTTCTGTGCTCCTTGGAAAGAATTAATTGTCCACGACCACCAAGGAAGTAGTAGAGGGGAAATACATGAAGTTGGAACCCTCCCACGTGTAAAGGTTTTGTGGCTCAACAATATGCCGGAGCTGATACATCTAGAAAAAGAGAGCTCCCAATCAGGGGGCCCTGTTTTTCCAAACTTGAAATTCCTACGGCTAGAAAAATGTGGCAAATTAGAGAATCTAGCTTCAACTTTGATATCTTTTCGGAATCTAACCACTTTGACCATATTGGACTGTCACGGACTGCAATACTTAATACCTTATTCTGTGGCTAAGAATTTGCGGCAACTCCAGGTGTTGGATGTTGGTTACTGTGAAAGAATGGTAGAAATAGTGGCAAGCAACGGAGATGATGCAGAAAATGAGATTACTTTCAGTTGCTTGCGAGATTTGAAACTTTGTGATCTACCAAGTCTGCAAGGATTTTGCACTGGAAATTGCATTTTCAAGGTCCCATCTTTACAGTCCAAGAATTTGATTGTCAAGAAGTGTCAGCTGATTGAGTTAAAGATTTCTCCTGATGGGTTACTCCAAAGTGATCCAAGACCAGAAAGACAACAAATAGCAGAGGAAACTGATGATGTACGGATGCCAAGTGATTCAAAGGAAAATGATCAAACTGACCAGTTGATGATTGCCGATTCAAATGTAGATGTTACAATTGCAAGACTCTCTGCCAAAAAGGAATCCTCATATTTTGGCTGGCGTGTTAAGGTTTTCCGATTGTGTGCGATTGCGTGTTTGTGTGTTATTTTCCTCTTCCTTTTGTTCTTCCTTTTAAAGGAAGAAATATCAGCCTGGAGAGCAGACTGGAAGGCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1414

Amino Acids

160.27

Weight (kDa)

5.98

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 320 8.6e-26 NB-ARC domain
LRR_14 PF23598 510 - 733 3.7e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 882 - 921 1.5e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 923 - 978 1.1e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1205 - 1304 2.9e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 629
Acc36I ACCTGC 2 cut(s) 947, 3033
AccB7I CCANNNNNTGG 1 cut(s) 3715
AccI GTMKAC 3 cut(s) 982, 1998, 2844
AccIII TCCGGA 1 cut(s) 1422
AciI CCGC 6 cut(s) 1209, 1488, 1680, 2052, 2877, 3700
AclWI GGATC 4 cut(s) 1433, 1534, 1900, 3950
AcoI YGGCCR 2 cut(s) 2886, 3071
AcuI CTGAAG 4 cut(s) 269, 1172, 1575, 2051
AcvI CACGTG 1 cut(s) 3467
AdeI CACNNNGTG 1 cut(s) 1740
AfaI GTAC 9 cut(s) 542, 865, 889, 1407, 1513, 1560, 2064, 2261, 4002
AfiI CCNNNNNNNGG 9 cut(s) 1363, 2385, 2416, 3035, 3036, 3534, 3535, 3715, 4198
AflII CTTAAG 1 cut(s) 2897
AflIII ACRYGT 1 cut(s) 3466
AhdI GACNNNNNGTC 1 cut(s) 294
AjiI CACGTC 1 cut(s) 2341
AjnI CCWGG 7 cut(s) 743, 1544, 1620, 3049, 3276, 3708, 4214
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
AloI GAACNNNNNNTCC 2 cut(s) 2975, 3007
Alw21I GWGCWC 3 cut(s) 3375, 3391, 3527
Alw26I GTCTC 5 cut(s) 302, 1289, 1713, 2614, 2729
AlwI GGATC 4 cut(s) 1433, 1534, 1900, 3950
Aor13HI TCCGGA 1 cut(s) 1422
AoxI GGCC 8 cut(s) 277, 462, 807, 1446, 1484, 2886, 3071, 3538
ApaI GGGCCC 1 cut(s) 3542
AseI ATTAAT 1 cut(s) 3404
Asp700I GAANNNNTTC 1 cut(s) 1100
AspS9I GGNCC 7 cut(s) 1485, 2612, 2963, 3269, 3538, 3539, 3868
AsuC2I CCSGG 1 cut(s) 2203
AsuHPI GGTGA 5 cut(s) 499, 1997, 2150, 2191, 2315
AvaII GGWCC 4 cut(s) 2612, 2963, 3269, 3868
BaeGI GKGCMC 2 cut(s) 2822, 3542
BalI TGGCCA 2 cut(s) 2888, 3073
BanII GRGCYC 2 cut(s) 3527, 3542
BauI CACGAG 1 cut(s) 2848
BbrPI CACGTG 1 cut(s) 3467
BbsI GAAGAC 6 cut(s) 245, 435, 569, 660, 1770, 1950
Bbv12I GWGCWC 3 cut(s) 3375, 3391, 3527
BbvCI CCTCAGC 1 cut(s) 1491
BccI CCATC 9 cut(s) 352, 688, 1457, 1948, 2261, 2911, 3082, 3880, 3932
BceAI ACGGC 3 cut(s) 264, 2017, 3584
BciT130I CCWGG 7 cut(s) 745, 1546, 1622, 3051, 3278, 3710, 4216
BciVI GTATCC 1 cut(s) 2163
BclI TGATCA 2 cut(s) 1438, 4030
BcnI CCSGG 1 cut(s) 2203
BcoDI GTCTC 5 cut(s) 302, 1289, 1713, 2614, 2729
BfaI CTAG 8 cut(s) 855, 1004, 1745, 1860, 1940, 3512, 3572, 3599
BfmI CTRYAG 1 cut(s) 2513
BfrI CTTAAG 1 cut(s) 2897
BfuAI ACCTGC 2 cut(s) 947, 3033
BfuI GTATCC 1 cut(s) 2163
BglI GCCNNNNNGGC 1 cut(s) 2885
BglII AGATCT 2 cut(s) 109, 2893
BisI GCNGC 1 cut(s) 3701
BlsI GCNGC 1 cut(s) 3702
Bme1390I CCNGG 8 cut(s) 745, 1546, 1622, 2203, 3051, 3278, 3710, 4216
Bme18I GGWCC 4 cut(s) 2612, 2963, 3269, 3868
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 2341
BmgT120I GGNCC 7 cut(s) 1485, 2612, 2963, 3269, 3538, 3539, 3868
BmiI GGNNCC 5 cut(s) 2993, 3457, 3539, 3540, 3870
BmrFI CCNGG 8 cut(s) 745, 1546, 1622, 2203, 3051, 3278, 3710, 4216
BoxI GACNNNNGTC 1 cut(s) 767
BpiI GAAGAC 6 cut(s) 245, 435, 569, 660, 1770, 1950
BplI GAGNNNNNCTC 4 cut(s) 2380, 2412, 2831, 2863
BpmI CTGGAG 2 cut(s) 3692, 4237
Bpu10I CCTNAGC 2 cut(s) 1491, 1805
BpuEI CTTGAG 5 cut(s) 1969, 2177, 2720, 2729, 3176
BpuMI CCSGG 1 cut(s) 2203
BsaAI YACGTR 1 cut(s) 3467
BsaJI CCNNGG 9 cut(s) 810, 1116, 1544, 1562, 1620, 1821, 2547, 3392, 3421
BsaWI WCCGGW 1 cut(s) 1422
BsaXI ACNNNNNCTCC 6 cut(s) 1458, 1488, 2087, 2117, 2975, 3005
Bsc4I CCNNNNNNNGG 9 cut(s) 1363, 2385, 2416, 3035, 3036, 3534, 3535, 3715, 4198
Bse118I RCCGGY 1 cut(s) 1027
Bse1I ACTGG 5 cut(s) 59, 204, 3853, 4042, 4232
Bse3DI GCAATG 2 cut(s) 1750, 1982
BseAI TCCGGA 1 cut(s) 1422
BseBI CCWGG 7 cut(s) 745, 1546, 1622, 3051, 3278, 3710, 4216
BseDI CCNNGG 9 cut(s) 810, 1116, 1544, 1562, 1620, 1821, 2547, 3392, 3421
BseLI CCNNNNNNNGG 9 cut(s) 1363, 2385, 2416, 3035, 3036, 3534, 3535, 3715, 4198
BseMI GCAATG 2 cut(s) 1750, 1982
BseMII CTCAG 6 cut(s) 699, 1482, 2740, 2813, 2847, 2895
BseNI ACTGG 5 cut(s) 59, 204, 3853, 4042, 4232
BseRI GAGGAG 3 cut(s) 770, 2164, 2651
BseSI GKGCMC 2 cut(s) 2822, 3542
Bsh1285I CGRYCG 1 cut(s) 2221
BshFI GGCC 8 cut(s) 279, 464, 809, 1448, 1486, 2888, 3073, 3540
BsiEI CGRYCG 1 cut(s) 2221
BsiHKAI GWGCWC 3 cut(s) 3375, 3391, 3527
BsiSI CCGG 4 cut(s) 1028, 1423, 2202, 3497
BsiWI CGTACG 1 cut(s) 887
BslFI GGGAC 2 cut(s) 828, 3854
BslI CCNNNNNNNGG 9 cut(s) 1363, 2385, 2416, 3035, 3036, 3534, 3535, 3715, 4198
BsmAI GTCTC 5 cut(s) 302, 1289, 1713, 2614, 2729
BsmBI CGTCTC 1 cut(s) 1713
BsmFI GGGAC 2 cut(s) 828, 3854
BsmI GAATGC 3 cut(s) 1139, 1398, 1574
BsnI GGCC 8 cut(s) 279, 464, 809, 1448, 1486, 2888, 3073, 3540
Bsp120I GGGCCC 1 cut(s) 3538
Bsp1286I GDGCHC 5 cut(s) 2822, 3375, 3391, 3527, 3542
Bsp13I TCCGGA 1 cut(s) 1422
Bsp1407I TGTACA 1 cut(s) 1511
Bsp19I CCATGG 1 cut(s) 810
BspACI CCGC 6 cut(s) 1209, 1488, 1680, 2052, 2877, 3700
BspANI GGCC 8 cut(s) 279, 464, 809, 1448, 1486, 2888, 3073, 3540
BspCNI CTCAG 6 cut(s) 700, 1483, 2739, 2812, 2846, 2894
BspEI TCCGGA 1 cut(s) 1422
BspLI GGNNCC 5 cut(s) 2993, 3457, 3539, 3540, 3870
BspMAI CTGCAG 1 cut(s) 2517
BspMI ACCTGC 2 cut(s) 947, 3033
BspPI GGATC 4 cut(s) 1433, 1534, 1900, 3950
BspTI CTTAAG 1 cut(s) 2897
BsrDI GCAATG 2 cut(s) 1750, 1982
BsrFI RCCGGY 1 cut(s) 1027
BsrGI TGTACA 1 cut(s) 1511
BsrI ACTGG 5 cut(s) 59, 204, 3853, 4042, 4232
BssAI RCCGGY 1 cut(s) 1027
BssECI CCNNGG 9 cut(s) 810, 1116, 1544, 1562, 1620, 1821, 2547, 3392, 3421
BssNAI GTATAC 1 cut(s) 983
BssSI CACGAG 1 cut(s) 2848
BssT1I CCWWGG 5 cut(s) 810, 1562, 2547, 3392, 3421
Bst1107I GTATAC 1 cut(s) 983
Bst2BI CACGAG 1 cut(s) 2848
Bst2UI CCWGG 7 cut(s) 745, 1546, 1622, 3051, 3278, 3710, 4216
Bst6I CTCTTC 4 cut(s) 1299, 1716, 2548, 4181
BstAFI CTTAAG 1 cut(s) 2897
BstAUI TGTACA 1 cut(s) 1511
BstBAI YACGTR 1 cut(s) 3467
BstC8I GCNNGC 8 cut(s) 67, 1488, 2017, 2555, 3126, 3757, 3800, 4121
BstDSI CCRYGG 1 cut(s) 810
BstENI CCTNNNNNAGG 1 cut(s) 4196
BstMAI GTCTC 5 cut(s) 302, 1289, 1713, 2614, 2729
BstMCI CGRYCG 1 cut(s) 2221
BstMWI GCNNNNNNNGC 4 cut(s) 1145, 2737, 2885, 4220
BstNI CCWGG 7 cut(s) 745, 1546, 1622, 3051, 3278, 3710, 4216
BstNSI RCATGY 2 cut(s) 2185, 3062
BstPAI GACNNNNGTC 1 cut(s) 767
BstSCI CCNGG 8 cut(s) 743, 1544, 1620, 2201, 3049, 3276, 3708, 4214
BstSFI CTRYAG 1 cut(s) 2513
BstSLI GKGCMC 2 cut(s) 2822, 3542
BstV2I GAAGAC 6 cut(s) 245, 435, 569, 660, 1770, 1950
BstX2I RGATCY 3 cut(s) 109, 1539, 2893
BstYI RGATCY 3 cut(s) 109, 1539, 2893
BstZ17I GTATAC 1 cut(s) 983
BsuI GTATCC 1 cut(s) 2163
BsuRI GGCC 8 cut(s) 279, 464, 809, 1448, 1486, 2888, 3073, 3540
BtgI CCRYGG 1 cut(s) 810
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 2341
BtsI GCAGTG 1 cut(s) 2510
BtsIMutI CAGTG 7 cut(s) 1258, 1305, 1375, 2314, 2510, 2889, 3846
BveI ACCTGC 2 cut(s) 947, 3033
Cac8I GCNNGC 8 cut(s) 67, 1488, 2017, 2555, 3126, 3757, 3800, 4121
Cfr10I RCCGGY 1 cut(s) 1027
Cfr13I GGNCC 7 cut(s) 1485, 2612, 2963, 3269, 3538, 3539, 3868
CseI GACGC 1 cut(s) 2338
Csp6I GTAC 9 cut(s) 541, 864, 888, 1406, 1512, 1559, 2063, 2260, 4001
CviQI GTAC 9 cut(s) 541, 864, 888, 1406, 1512, 1559, 2063, 2260, 4001
DraI TTTAAA 2 cut(s) 1059, 4197
DraIII CACNNNGTG 1 cut(s) 1740
DriI GACNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 2886, 3071
Eam1104I CTCTTC 4 cut(s) 1299, 1716, 2548, 4181
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 4 cut(s) 1299, 1716, 2548, 4181
Ecl136II GAGCTC 1 cut(s) 3525
Eco130I CCWWGG 5 cut(s) 810, 1562, 2547, 3392, 3421
Eco147I AGGCCT 1 cut(s) 1448
Eco24I GRGCYC 2 cut(s) 3527, 3542
Eco32I GATATC 3 cut(s) 523, 2751, 3615
Eco47I GGWCC 4 cut(s) 2612, 2963, 3269, 3868
Eco53kI GAGCTC 1 cut(s) 3525
Eco57I CTGAAG 4 cut(s) 269, 1172, 1575, 2051
Eco72I CACGTG 1 cut(s) 3467
EcoICRI GAGCTC 1 cut(s) 3525
EcoNI CCTNNNNNAGG 1 cut(s) 4196
EcoO109I RGGNCCY 3 cut(s) 3538, 3539, 3868
EcoRI GAATTC 1 cut(s) 1212
EcoRII CCWGG 7 cut(s) 743, 1544, 1620, 3049, 3276, 3708, 4214
EcoRV GATATC 3 cut(s) 523, 2751, 3615
EcoT14I CCWWGG 5 cut(s) 810, 1562, 2547, 3392, 3421
EcoT22I ATGCAT 1 cut(s) 1398
EcoT38I GRGCYC 2 cut(s) 3527, 3542
ErhI CCWWGG 5 cut(s) 810, 1562, 2547, 3392, 3421
Esp3I CGTCTC 1 cut(s) 1713
FalI AAGNNNNNCTT 2 cut(s) 3138, 3170
FaqI GGGAC 2 cut(s) 828, 3854
FauI CCCGC 2 cut(s) 1495, 2884
FauNDI CATATG 1 cut(s) 2365
FbaI TGATCA 2 cut(s) 1438, 4030
FblI GTMKAC 3 cut(s) 982, 1998, 2844
Fnu4HI GCNGC 1 cut(s) 3701
FriOI GRGCYC 2 cut(s) 3527, 3542
Fsp4HI GCNGC 1 cut(s) 3701
FspBI CTAG 8 cut(s) 855, 1004, 1745, 1860, 1940, 3512, 3572, 3599
GluI GCNGC 1 cut(s) 3701
GsuI CTGGAG 2 cut(s) 3692, 4237
HaeIII GGCC 8 cut(s) 279, 464, 809, 1448, 1486, 2888, 3073, 3540
HapII CCGG 4 cut(s) 1028, 1423, 2202, 3497
HgaI GACGC 1 cut(s) 2338
HincII GTYRAC 3 cut(s) 348, 849, 1999
HindII GTYRAC 3 cut(s) 348, 849, 1999
HindIII AAGCTT 5 cut(s) 1099, 1966, 2528, 2662, 3152
HpaII CCGG 4 cut(s) 1028, 1423, 2202, 3497
HphI GGTGA 5 cut(s) 499, 1997, 2150, 2191, 2315
Hpy99I CGWCG 4 cut(s) 1699, 2003, 2357, 2585
HpyCH4IV ACGT 4 cut(s) 165, 2061, 2340, 3466
HpyF10VI GCNNNNNNNGC 4 cut(s) 1145, 2737, 2885, 4220
HpySE526I ACGT 4 cut(s) 165, 2061, 2340, 3466
Kpn2I TCCGGA 1 cut(s) 1422
Ksp22I TGATCA 2 cut(s) 1438, 4030
LmnI GCTCC 6 cut(s) 424, 757, 3378, 3394, 3499, 3530
MaeI CTAG 8 cut(s) 855, 1004, 1745, 1860, 1940, 3512, 3572, 3599
MaeII ACGT 4 cut(s) 165, 2061, 2340, 3466
MaeIII GTNAC 7 cut(s) 1160, 2359, 3001, 3653, 3725, 3942, 4072
MfeI CAATTG 4 cut(s) 1193, 1853, 2255, 4077
MflI RGATCY 3 cut(s) 109, 1539, 2893
MhlI GDGCHC 5 cut(s) 2822, 3375, 3391, 3527, 3542
MlsI TGGCCA 2 cut(s) 2888, 3073
MluNI TGGCCA 2 cut(s) 2888, 3073
MlyI GAGTC 4 cut(s) 412, 757, 2840, 4080
Mox20I TGGCCA 2 cut(s) 2888, 3073
Mph1103I ATGCAT 1 cut(s) 1398
MroI TCCGGA 1 cut(s) 1422
MroXI GAANNNNTTC 1 cut(s) 1100
MscI TGGCCA 2 cut(s) 2888, 3073
MslI CAYNNNNRTG 1 cut(s) 2679
Msp20I TGGCCA 2 cut(s) 2888, 3073
MspA1I CMGCKG 3 cut(s) 1490, 1680, 3913
MspCI CTTAAG 1 cut(s) 2897
MspI CCGG 4 cut(s) 1028, 1423, 2202, 3497
MspR9I CCNGG 8 cut(s) 745, 1546, 1622, 2203, 3051, 3278, 3710, 4216
MunI CAATTG 4 cut(s) 1193, 1853, 2255, 4077
Mva1269I GAATGC 3 cut(s) 1139, 1398, 1574
MvaI CCWGG 7 cut(s) 745, 1546, 1622, 3051, 3278, 3710, 4216
MwoI GCNNNNNNNGC 4 cut(s) 1145, 2737, 2885, 4220
NciI CCSGG 1 cut(s) 2203
NcoI CCATGG 1 cut(s) 810
NdeI CATATG 1 cut(s) 2365
NlaIV GGNNCC 5 cut(s) 2993, 3457, 3539, 3540, 3870
NmeAIII GCCGAG 1 cut(s) 1141
NmuCI GTSAC 2 cut(s) 2359, 3653
NsiI ATGCAT 1 cut(s) 1398
NspI RCATGY 2 cut(s) 2185, 3062
PceI AGGCCT 1 cut(s) 1448
PcsI WCGNNNNNNNCGW 2 cut(s) 420, 1703
PctI GAATGC 3 cut(s) 1139, 1398, 1574
PdmI GAANNNNTTC 1 cut(s) 1100
Pfl23II CGTACG 1 cut(s) 887
PflFI GACNNNGTC 1 cut(s) 2357
PflMI CCANNNNNTGG 1 cut(s) 3715
PfoI TCCNGGA 1 cut(s) 3049
PkrI GCNGC 1 cut(s) 3702
Ple19I CGATCG 1 cut(s) 2221
PleI GAGTC 4 cut(s) 411, 757, 2840, 4080
PmaCI CACGTG 1 cut(s) 3467
PmlI CACGTG 1 cut(s) 3467
PpsI GAGTC 4 cut(s) 411, 757, 2840, 4080
Ppu21I YACGTR 1 cut(s) 3467
PpuMI RGGWCCY 1 cut(s) 3868
PshAI GACNNNNGTC 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 3404
PsiI TTATAA 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 3527
Psp5II RGGWCCY 1 cut(s) 3868
Psp6I CCWGG 7 cut(s) 743, 1544, 1620, 3049, 3276, 3708, 4214
PspCI CACGTG 1 cut(s) 3467
PspGI CCWGG 7 cut(s) 743, 1544, 1620, 3049, 3276, 3708, 4214
PspLI CGTACG 1 cut(s) 887
PspN4I GGNNCC 5 cut(s) 2993, 3457, 3539, 3540, 3870
PspOMI GGGCCC 1 cut(s) 3538
PspPI GGNCC 7 cut(s) 1485, 2612, 2963, 3269, 3538, 3539, 3868
PspPPI RGGWCCY 1 cut(s) 3868
PstI CTGCAG 1 cut(s) 2517
PsuI RGATCY 3 cut(s) 109, 1539, 2893
PsyI GACNNNGTC 1 cut(s) 2357
PvuI CGATCG 1 cut(s) 2221
PvuII CAGCTG 1 cut(s) 3913
RsaI GTAC 9 cut(s) 542, 865, 889, 1407, 1513, 1560, 2064, 2261, 4002
RsaNI GTAC 9 cut(s) 541, 864, 888, 1406, 1512, 1559, 2063, 2260, 4001
RseI CAYNNNNRTG 1 cut(s) 2679
SacI GAGCTC 1 cut(s) 3527
SalI GTCGAC 1 cut(s) 1997
SatI GCNGC 1 cut(s) 3701
Sau96I GGNCC 7 cut(s) 1485, 2612, 2963, 3269, 3538, 3539, 3868
SchI GAGTC 4 cut(s) 412, 757, 2840, 4080
ScrFI CCNGG 8 cut(s) 745, 1546, 1622, 2203, 3051, 3278, 3710, 4216
SduI GDGCHC 5 cut(s) 2822, 3375, 3391, 3527, 3542
SfcI CTRYAG 1 cut(s) 2513
SinI GGWCC 4 cut(s) 2612, 2963, 3269, 3868
SmiMI CAYNNNNRTG 1 cut(s) 2679
SmlI CTYRAG 6 cut(s) 1948, 2192, 2735, 2744, 2897, 3155
SmoI CTYRAG 6 cut(s) 1948, 2192, 2735, 2744, 2897, 3155
SseBI AGGCCT 1 cut(s) 1448
SsiI CCGC 6 cut(s) 1209, 1488, 1680, 2052, 2877, 3700
SspI AATATT 2 cut(s) 2287, 3364
SspMI CTAG 8 cut(s) 855, 1004, 1745, 1860, 1940, 3512, 3572, 3599
SstI GAGCTC 1 cut(s) 3527
StuI AGGCCT 1 cut(s) 1448
StyD4I CCNGG 8 cut(s) 743, 1544, 1620, 2201, 3049, 3276, 3708, 4214
StyI CCWWGG 5 cut(s) 810, 1562, 2547, 3392, 3421
TaiI ACGT 4 cut(s) 168, 2064, 2343, 3469
TaqI TCGA 5 cut(s) 213, 777, 1998, 2217, 2221
TatI WGTACW 3 cut(s) 863, 1511, 2259
TauI GCSGC 1 cut(s) 3703
TscAI CASTG 7 cut(s) 1265, 1305, 1375, 2314, 2517, 2889, 3853
TseFI GTSAC 2 cut(s) 2359, 3653
Tsp45I GTSAC 2 cut(s) 2359, 3653
TspRI CASTG 7 cut(s) 1265, 1305, 1375, 2314, 2517, 2889, 3853
Tth111I GACNNNGTC 1 cut(s) 2357
Van91I CCANNNNNTGG 1 cut(s) 3715
Vha464I CTTAAG 1 cut(s) 2897
VpaK11BI GGWCC 4 cut(s) 2612, 2963, 3269, 3868
VspI ATTAAT 1 cut(s) 3404
XagI CCTNNNNNAGG 1 cut(s) 4196
XbaI TCTAGA 3 cut(s) 854, 1744, 3511
XceI RCATGY 2 cut(s) 2185, 3062
XmiI GTMKAC 3 cut(s) 982, 1998, 2844
XmnI GAANNNNTTC 1 cut(s) 1100
XspI CTAG 8 cut(s) 855, 1004, 1745, 1860, 1940, 3512, 3572, 3599
Zsp2I ATGCAT 1 cut(s) 1398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.