RLG00000009379

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
51916390 .. 51927099
10710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009379

Sequence Viewer

Length: 3810 bp
ATGGGGTTTCTTGTTGCAATTACTGGAGTTGTTGGAAAGATTGCTGAGTTCACAGTTCCACCAGTTATACGCCAAGTGGGTTATGTAATCCACTACAACAAGAACCTCAAAAAACTAGAGAGTCGAGTAGATGACTTAGGTGATGCCAGAGAAAGAATGAAGCATGCTGTTGAAACAGAGAAAAGAAAAGGTAGAGAAATTGAAGCAGGTGTCCAGAACTGGCTGACTAAAGTGGATGAGATGATTGAAAAAGCAAACGATTTCTTGAAAGATGGACAGCATGCAGAGACTAGATGTCTCCATGGCTTTTGTCCTAATCTAAAGCTTCGCCATCATCGCAGCAGGAAATCAACAAAATTGGTTAAAGAAGTTGCTGAGCTCTGTGGGAAAAAGGATTTTGGCGATATTGCATACGATGTCGAACCAGAGGAGGTGTGCAGCACACCTGCTAAAGATTACCAGGCCTTTGATTCAAGGACTTCGGTTGCGAAGGAAATCATGAATGAACTGAGACAATCTGATACCAACATAATTGGGGTGTACGGTATTGGGGGTGTGGGGAAGACAACGCTTGCTAAAGAAGTTTATCGGCAAGCCACAGAAGATAAAACTTTATTTGATGATGTTGTTATGGTACAAGATGTGAAAAAGATTCCAGATTTGCATGGAATTCAAAAAAGAATTGCTGAAAAGTTGGGAATGGACTTTCTCGGAGATGAGACTACAGACAAAAGAGCTAGTCGTCTTTTTAGTAGGATAAAAAAGAATAAAGTTCTGGTAATTTTGGATGACATACATGAAAAAATAGATTTGGAGGTTGTGGGAGTTCCACGTGTGTCGAATTGTAAAGTATTGTTGACATCTAGAACTAGAGAAGTATTATCGGGTGAGATGCGTACACAAAAGGAGTTTCAACTTGACCTTTTAGATGCAAAAGAAAATTGGAGTTTATTTGAGAAGATGGCAGGTGATGTTGTTCAAAATCCTGCCATACGAGAAGTAGCAATAGAAGTGGCCCAAAAGTGCGGAGGCTTGCCGGTTTTAGTGGTAACAGTTGCAAGCGCCCTGAAGGATAGAAGTGCATTATATGCTTGGAAAGATGCCGTGCGACGCCTAAAAATATTTGATAAAGAAGGATTCACGGAAAAATCATACTTGGCTCTGGAGTGGAGTTACGAGCAATTGGATGATAAGGAACTTAAGCCATTGTGCTTGCTATCTGGAATTATGAGGGATTACTCTATGAATCTTCTTGACTTGCTGAAATACAGTATGGGCTTAGGTTTGATTAAAAACGTGGATACGATGGAAGAAGCACAGAATGCACTACATTCACTGGTTGAAAAACTTAAAGATTCTTGTCTATTGCTAGAAGACAGTGATAATAATAAATATTTTAGAATGCATGATCTTGTTCATGAAGTTGTAAACCAGATTGCCTTGAGAGAGCAACATGTCTTCAGCGTTAGGTATCCCAACTTGACATGGTTGGAGGTGAATGAACTCAATGGTTTAACATTCTTGTTATCATCTTCAATGGCTAGAAGCCTTGCACAACTGAAACGTCTTCAAGTATCAGGATGTCAAATAATGGAAGAGATAGTATCAATAGAAGAATTTGATGAAGAAATTGTAGACAACTTTTGCCAGCTACAAATTCTGGAGCTAAAAGACCTTCCAAATCTCACTAAATTCTGCTCAAGAAACCATACTGAACTTTCAAATCCATCCTCTGGGATACAACACTTTCTTTTTGACAATAAGGTAGAGTTTCCAAACTTGAAGAAGTTATCCATTGATGGCCTAGCAAACTTGACGACAATATGGAACAATCAATTTTCTTTAGAGAGTTTAAAAAATCTAGAGATAATTGAAATTGTTTCATGTGACAGTTTGAAAAGTATTTTTCCAGTTTTGGTGGCTAGAAATCTCCAGCAGTTAAAAAGGCTGATAGTGAAGAGTTGTGGAGCTCAGGAAATTGTTGCAAAGGAAGAGTCACTACAAACAACACCTAAGTTTGTGTTTCCAAAAGTAACAGAAGTGATTTTTAGTGATATGTCACAACTCAAGAATTTCTACCCAGGAAAGCATGTGTCCGGCTGGCCGTCTCTTAATGAGTTGAGGGTGGTAGAATGTGTTAAAGTCAACGTGTTTGCCGAGGTAATCTCAAGTTTTCAAGCACATAATGGGCCGGAACGTCATAGTGTTCTTATCTCACAGTCTCTCTTTTTAATTGAGAAGGATTCATTTCCCAACTTGGAATGGTTGTTCGTGAGAGCAATGGAGCCACTCCCAGCAGCAGCAGCGCAATTGTTTAGCAAACTAAAGCATCTTGAGGTTTGTTGTTCGGAGTCCAAGTCACTTGTTTTCCTCGACAAATTACTCAACTCAGAAGGAAACAGCAATAGTAGTGCAGTTGGGATTGGGACCCAACACCAGCAGCAGCTCCCACATTTAAAAGAGTTGTGGCTTCTTCGAATGGAGAAGCTGACGCATCTAGGCCAAGATGATGAAGAGGAAAACTTACAATCAGCCCCCCGCATCCCAAATTTTCCCAACTTGGAAATTCTATACGTGAATGGTTGCGACAGCTTAAGGAATCTGAGATCATCAGCAATATCCTTCAACACTCTAACAAGTTTGCAAGTAAGTGTTTGCAAGGGGCTGAAATACTTGATAACTTACTCCGTGGCCAAAAGTTTAATGCAGCTCACAGAATTGGAAGTTGTGGAGTGTAAGAGACTGGTATATATAGTGGCAAGCAATGAAGATGACGATTCATTAGGAAATTATGAGATTACATTCAGGAGGCTGAAACATTTGAAACTATCAAGTCTACCAAGAATGCAAGGCTTTTGCTCCGGAAATTGCATTGCTAAATTCCCGTCCTTGAAAACTTCAAGCATGAGCAACCGCCTCAAATTGAAGATTTTCGAAGCTCATAACCAAACGCTACAGCTAACAGACGAAGAGGCAGACACAGATGTCGATTACTTCGAGGCAAGTCTGATTGCTGAGGATAAACGGAATTCGGCAACTCCAAAACTCCAGAAATCATTACCGTGTCTGAGAGGCTTCTCATCATTTCTGCTTTCAAATAGTGAAGCTCATCTAAGGTATCAAGATGAGGACCGAACACAATTTGCCAAGAGCCCTGCAAATCATGAAGTTCCGATTTTCCTGCTCAAAGTCTTATCTCCTCTAGTAGGAATCATTGATGATGGTAACTTAACTGGATCTGGAGATTATAATATCAAAGTGGTCAATATATCAAGGACCGAACACAATTTGCCAAGAGCCCTGCAAATCATGAAGTTCTGTTTTCCCTGCTCGAAGTCTTTATCTCCTCCAGCAGGAATCATAGATGATAGTAACTTAGCTAATAACATGTGGAGCCAGAATATTGTTCTCTTACATGACTTGTATGGTATGGAACATGATCTGTTGAGGATAAAGGAACCTAATTGTGAAGGAGCACAAGATTTGGTAGTTGTCAAAGATTCTAATTATGTTACTACTGTTCAATCTGTGTTGCCACTTGCCACATACAATTTTGAATTAGGTTCCAGCGCGAAAGAAGATTCTGAGAATGAGGGCACTGAAGATGAGGCAGTGACTGAAGCTTCATATGAGCTTTACGATAACATGAATGCTATCATGGAGGCAAGTGAAGAAGAAGAAGATCCTGAGGATGAGAGCTCTGAAGATGAGTCGGTTGATGAAGCTTCATCTGAGCTTCAGGATAACATGAATGATATCAGGAAACAAATGAAGAGGAAGGCTGTTGCCTCTGAGAGTGAGACAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1270

Amino Acids

143.37

Weight (kDa)

5.28

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 163 - 323 1.1e-28 NB-ARC domain
LRR_RPS2 PF23247 473 - 572 5e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 590 - 656 7.8e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 743 - 870 8e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 870 - 967 3.3e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3249
AarI CACCTGC 3 cut(s) 197, 454, 956
AasI GACNNNNNNGTC 1 cut(s) 2984
Acc36I ACCTGC 3 cut(s) 197, 454, 956
AccB7I CCANNNNNTGG 1 cut(s) 1733
AccI GTMKAC 2 cut(s) 1635, 2836
AccII CGCG 1 cut(s) 3572
AccIII TCCGGA 1 cut(s) 2861
AciI CCGC 3 cut(s) 1026, 2539, 2914
AclWI GGATC 2 cut(s) 3244, 3677
AcoI YGGCCR 2 cut(s) 2102, 2691
AcsI RAATTY 9 cut(s) 669, 1616, 1656, 1691, 2071, 2548, 2565, 2879, 3028
AcuI CTGAAG 6 cut(s) 1088, 1444, 3621, 3639, 3722, 3723
AcvI CACGTG 1 cut(s) 833
AcyI GRCGYC 1 cut(s) 1111
AfaI GTAC 3 cut(s) 542, 636, 898
AfiI CCNNNNNNNGG 3 cut(s) 1733, 3206, 3353
AflII CTTAAG 2 cut(s) 1199, 2593
AflIII ACRYGT 4 cut(s) 832, 1453, 2148, 3387
AhdI GACNNNNNGTC 1 cut(s) 294
AjnI CCWGG 2 cut(s) 459, 2080
AloI GAACNNNNNNTCC 2 cut(s) 2252, 2284
Alw21I GWGCWC 4 cut(s) 381, 1972, 3478, 3701
Alw26I GTCTC 8 cut(s) 281, 302, 505, 713, 2112, 2226, 2734, 3794
AlwI GGATC 2 cut(s) 3244, 3677
AlwNI CAGNNNCTG 1 cut(s) 3617
Aor13HI TCCGGA 1 cut(s) 2861
AoxI GGCC 7 cut(s) 462, 1014, 1801, 2102, 2189, 2500, 2691
ApeKI GCWGC 8 cut(s) 339, 438, 2297, 2300, 2303, 2440, 2443, 2707
ApoI RAATTY 9 cut(s) 669, 1616, 1656, 1691, 2071, 2548, 2565, 2879, 3028
ArsI GACNNNNNNTTYG 2 cut(s) 1979, 2011
Asp700I GAANNNNTTC 1 cut(s) 2930
AspLEI GCGC 3 cut(s) 1064, 2308, 3572
AspS9I GGNCC 5 cut(s) 1015, 2189, 2427, 3130, 3276
AsuHPI GGTGA 4 cut(s) 152, 899, 980, 1507
AsuII TTCGAA 2 cut(s) 2476, 2934
AvaII GGWCC 3 cut(s) 2427, 3130, 3276
AxyI CCTNAGG 1 cut(s) 3687
BaeGI GKGCMC 1 cut(s) 3599
BalI TGGCCA 1 cut(s) 2693
BanII GRGCYC 5 cut(s) 381, 1972, 3155, 3301, 3701
BarI GAAGNNNNNNTAC 2 cut(s) 1983, 2015
BbrPI CACGTG 1 cut(s) 833
BbsI GAAGAC 4 cut(s) 569, 1380, 1450, 1559
Bbv12I GWGCWC 4 cut(s) 381, 1972, 3478, 3701
BbvCI CCTCAGC 1 cut(s) 3015
BbvI GCAGC 8 cut(s) 351, 450, 2309, 2312, 2315, 2452, 2455, 2719
BccI CCATC 7 cut(s) 266, 339, 955, 1300, 1735, 1793, 3215
BceAI ACGGC 2 cut(s) 1088, 2089
BcgI CGANNNNNNTGC 2 cut(s) 3163, 3197
BciT130I CCWGG 2 cut(s) 461, 2082
BciVI GTATCC 3 cut(s) 1294, 1482, 1731
BcoDI GTCTC 8 cut(s) 281, 302, 505, 713, 2112, 2226, 2734, 3794
BfmI CTRYAG 2 cut(s) 723, 2954
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 2 cut(s) 1199, 2593
BfuAI ACCTGC 3 cut(s) 197, 454, 956
BfuI GTATCC 3 cut(s) 1294, 1482, 1731
BisI GCNGC 8 cut(s) 340, 439, 2298, 2301, 2304, 2441, 2444, 2708
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 8 cut(s) 341, 440, 2299, 2302, 2305, 2442, 2445, 2709
Bme1390I CCNGG 2 cut(s) 461, 2082
Bme18I GGWCC 3 cut(s) 2427, 3130, 3276
BmeRI GACNNNNNGTC 1 cut(s) 294
BmgT120I GGNCC 5 cut(s) 1015, 2189, 2427, 3130, 3276
BmiI GGNNCC 6 cut(s) 2286, 2428, 2429, 3395, 3459, 3565
BmrFI CCNGG 2 cut(s) 461, 2082
BmsI GCATC 7 cut(s) 133, 882, 919, 1090, 2338, 2503, 2550
BpiI GAAGAC 4 cut(s) 569, 1380, 1450, 1559
BplI GAGNNNNNCTC 2 cut(s) 2150, 2182
BpmI CTGGAG 7 cut(s) 45, 1184, 1682, 1916, 3032, 3261, 3333
Bpu10I CCTNAGC 3 cut(s) 1279, 1971, 3015
Bpu1102I GCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 2 cut(s) 2476, 2934
BpuEI CTTGAG 5 cut(s) 1462, 1684, 2051, 2152, 2354
BsaAI YACGTR 2 cut(s) 833, 2575
BsaHI GRCGYC 1 cut(s) 1111
BsaJI CCNNGG 4 cut(s) 301, 2080, 2157, 2688
BsaWI WCCGGW 1 cut(s) 2861
BsaXI ACNNNNNCTCC 2 cut(s) 2342, 2372
Bsc4I CCNNNNNNNGG 3 cut(s) 1733, 3206, 3353
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 7 cut(s) 28, 62, 224, 1341, 1910, 2748, 3238
Bse21I CCTNAGG 1 cut(s) 3687
Bse3DI GCAATG 3 cut(s) 2286, 2770, 2871
BseAI TCCGGA 1 cut(s) 2861
BseBI CCWGG 2 cut(s) 461, 2082
BseDI CCNNGG 4 cut(s) 301, 2080, 2157, 2688
BseGI GGATG 7 cut(s) 241, 793, 1192, 1586, 1727, 2541, 3697
BseLI CCNNNNNNNGG 3 cut(s) 1733, 3206, 3353
BseMI GCAATG 3 cut(s) 2286, 2770, 2871
BseNI ACTGG 7 cut(s) 28, 62, 224, 1341, 1910, 2748, 3238
BseRI GAGGAG 3 cut(s) 443, 3189, 3336
BseSI GKGCMC 1 cut(s) 3599
BseXI GCAGC 8 cut(s) 351, 450, 2309, 2312, 2315, 2452, 2455, 2719
BseYI CCCAGC 1 cut(s) 2293
BsgI GTGCAG 2 cut(s) 457, 2433
Bsh1236I CGCG 1 cut(s) 3572
BshFI GGCC 7 cut(s) 464, 1016, 1803, 2104, 2191, 2502, 2693
BsiHKAI GWGCWC 4 cut(s) 381, 1972, 3478, 3701
BsiSI CCGG 4 cut(s) 1037, 2097, 2192, 2862
BslFI GGGAC 1 cut(s) 2440
BslI CCNNNNNNNGG 3 cut(s) 1733, 3206, 3353
BsmAI GTCTC 8 cut(s) 281, 302, 505, 713, 2112, 2226, 2734, 3794
BsmBI CGTCTC 1 cut(s) 2112
BsmFI GGGAC 1 cut(s) 2440
BsmI GAATGC 4 cut(s) 1327, 1407, 2850, 3655
BsnI GGCC 7 cut(s) 464, 1016, 1803, 2104, 2191, 2502, 2693
Bsp119I TTCGAA 2 cut(s) 2476, 2934
Bsp1286I GDGCHC 7 cut(s) 381, 1972, 3155, 3301, 3478, 3599, 3701
Bsp13I TCCGGA 1 cut(s) 2861
Bsp143I GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 3 cut(s) 1026, 2539, 2914
BspANI GGCC 7 cut(s) 464, 1016, 1803, 2104, 2191, 2502, 2693
BspEI TCCGGA 1 cut(s) 2861
BspFNI CGCG 1 cut(s) 3572
BspHI TCATGA 4 cut(s) 498, 1417, 3163, 3309
BspLI GGNNCC 6 cut(s) 2286, 2428, 2429, 3395, 3459, 3565
BspMI ACCTGC 3 cut(s) 197, 454, 956
BspPI GGATC 2 cut(s) 3244, 3677
BspT104I TTCGAA 2 cut(s) 2476, 2934
BspTI CTTAAG 2 cut(s) 1199, 2593
BsrDI GCAATG 3 cut(s) 2286, 2770, 2871
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 7 cut(s) 28, 62, 224, 1341, 1910, 2748, 3238
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 4 cut(s) 301, 2080, 2157, 2688
BssMI GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
BssNI GRCGYC 1 cut(s) 1111
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 461, 2082
Bst6I CTCTTC 6 cut(s) 1590, 1952, 1986, 2508, 2964, 3767
BstACI GRCGYC 1 cut(s) 1111
BstAFI CTTAAG 2 cut(s) 1199, 2593
BstAPI GCANNNNNTGC 2 cut(s) 1088, 1322
BstBAI YACGTR 2 cut(s) 833, 2575
BstBI TTCGAA 2 cut(s) 2476, 2934
BstDSI CCRYGG 2 cut(s) 301, 2688
BstENI CCTNNNNNAGG 2 cut(s) 3204, 3351
BstF5I GGATG 7 cut(s) 241, 793, 1192, 1586, 1727, 2541, 3697
BstFNI CGCG 1 cut(s) 3572
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 3 cut(s) 1064, 2308, 3572
BstKTI GATC 5 cut(s) 1411, 2609, 3239, 3442, 3685
BstMAI GTCTC 8 cut(s) 281, 302, 505, 713, 2112, 2226, 2734, 3794
BstMBI GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
BstMWI GCNNNNNNNGC 4 cut(s) 336, 1088, 1322, 2303
BstNI CCWGG 2 cut(s) 461, 2082
BstNSI RCATGY 5 cut(s) 167, 284, 1457, 2093, 3391
BstSCI CCNGG 2 cut(s) 459, 2080
BstSFI CTRYAG 2 cut(s) 723, 2954
BstSLI GKGCMC 1 cut(s) 3599
BstUI CGCG 1 cut(s) 3572
BstV1I GCAGC 8 cut(s) 351, 450, 2309, 2312, 2315, 2452, 2455, 2719
BstV2I GAAGAC 4 cut(s) 569, 1380, 1450, 1559
BstX2I RGATCY 2 cut(s) 3236, 3682
BstYI RGATCY 2 cut(s) 3236, 3682
Bsu36I CCTNAGG 1 cut(s) 3687
BsuI GTATCC 3 cut(s) 1294, 1482, 1731
BsuRI GGCC 7 cut(s) 464, 1016, 1803, 2104, 2191, 2502, 2693
BtgI CCRYGG 2 cut(s) 301, 2688
BtgZI GCGATG 1 cut(s) 320
BtsCI GGATG 7 cut(s) 241, 793, 1192, 1586, 1727, 2541, 3697
BtsI GCAGTG 1 cut(s) 3618
BtsIMutI CAGTG 4 cut(s) 1334, 1384, 3597, 3618
BveI ACCTGC 3 cut(s) 197, 454, 956
CaiI CAGNNNCTG 1 cut(s) 3617
CciI TCATGA 4 cut(s) 498, 1417, 3163, 3309
CfoI GCGC 3 cut(s) 1064, 2308, 3572
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 5 cut(s) 1015, 2189, 2427, 3130, 3276
CseI GACGC 2 cut(s) 1119, 2500
Csp6I GTAC 3 cut(s) 541, 635, 897
CspCI CAANNNNNGTGG 2 cut(s) 993, 1028
CviQI GTAC 3 cut(s) 541, 635, 897
DpnI GATC 5 cut(s) 1410, 2608, 3238, 3441, 3684
DpnII GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
DraI TTTAAA 2 cut(s) 1854, 2457
DrdI GACNNNNNNGTC 1 cut(s) 2984
DriI GACNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 2984
EaeI YGGCCR 2 cut(s) 2102, 2691
Eam1104I CTCTTC 6 cut(s) 1590, 1952, 1986, 2508, 2964, 3767
Eam1105I GACNNNNNGTC 1 cut(s) 294
EarI CTCTTC 6 cut(s) 1590, 1952, 1986, 2508, 2964, 3767
Ecl136II GAGCTC 3 cut(s) 379, 1970, 3699
Eco130I CCWWGG 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 464
Eco24I GRGCYC 5 cut(s) 381, 1972, 3155, 3301, 3701
Eco32I GATATC 1 cut(s) 3757
Eco47I GGWCC 3 cut(s) 2427, 3130, 3276
Eco53kI GAGCTC 3 cut(s) 379, 1970, 3699
Eco57I CTGAAG 6 cut(s) 1088, 1444, 3621, 3639, 3722, 3723
Eco72I CACGTG 1 cut(s) 833
Eco81I CCTNAGG 1 cut(s) 3687
EcoICRI GAGCTC 3 cut(s) 379, 1970, 3699
EcoNI CCTNNNNNAGG 2 cut(s) 3204, 3351
EcoO109I RGGNCCY 1 cut(s) 2427
EcoRI GAATTC 2 cut(s) 669, 3028
EcoRII CCWGG 2 cut(s) 459, 2080
EcoRV GATATC 1 cut(s) 3757
EcoT14I CCWWGG 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 1407
EcoT38I GRGCYC 5 cut(s) 381, 1972, 3155, 3301, 3701
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 2112
FaqI GGGAC 1 cut(s) 2440
FauI CCCGC 1 cut(s) 2546
FauNDI CATATG 1 cut(s) 3628
FblI GTMKAC 2 cut(s) 1635, 2836
Fnu4HI GCNGC 8 cut(s) 340, 439, 2298, 2301, 2304, 2441, 2444, 2708
FokI GGATG 7 cut(s) 248, 800, 1199, 1593, 1714, 2528, 3704
FriOI GRGCYC 5 cut(s) 381, 1972, 3155, 3301, 3701
Fsp4HI GCNGC 8 cut(s) 340, 439, 2298, 2301, 2304, 2441, 2444, 2708
GlaI GCGC 3 cut(s) 1063, 2307, 3571
GluI GCNGC 8 cut(s) 340, 439, 2298, 2301, 2304, 2441, 2444, 2708
GsaI CCCAGC 1 cut(s) 2297
GsuI CTGGAG 7 cut(s) 45, 1184, 1682, 1916, 3032, 3261, 3333
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 7 cut(s) 464, 1016, 1803, 2104, 2191, 2502, 2693
HapII CCGG 4 cut(s) 1037, 2097, 2192, 2862
HgaI GACGC 2 cut(s) 1119, 2500
HhaI GCGC 3 cut(s) 1064, 2308, 3572
Hin1I GRCGYC 1 cut(s) 1111
Hin6I GCGC 3 cut(s) 1062, 2306, 3570
HinP1I GCGC 3 cut(s) 1062, 2306, 3570
HincII GTYRAC 2 cut(s) 858, 2146
HindII GTYRAC 2 cut(s) 858, 2146
HindIII AAGCTT 3 cut(s) 323, 3621, 3723
HpaII CCGG 4 cut(s) 1037, 2097, 2192, 2862
HphI GGTGA 4 cut(s) 152, 899, 980, 1507
Hpy166II GTNNAC 8 cut(s) 51, 541, 858, 899, 1429, 1636, 2146, 2837
Hpy8I GTNNAC 8 cut(s) 51, 541, 858, 899, 1429, 1636, 2146, 2837
Hpy99I CGWCG 1 cut(s) 1113
HpyAV CCTTC 9 cut(s) 484, 1063, 1127, 1685, 2233, 2387, 2632, 3464, 3772
HpyCH4IV ACGT 6 cut(s) 832, 1296, 1564, 2148, 2197, 2574
HpyF10VI GCNNNNNNNGC 4 cut(s) 336, 1088, 1322, 2303
HpySE526I ACGT 6 cut(s) 832, 1296, 1564, 2148, 2197, 2574
Hsp92I GRCGYC 1 cut(s) 1111
HspAI GCGC 3 cut(s) 1062, 2306, 3570
KflI GGGWCCC 1 cut(s) 2427
Kpn2I TCCGGA 1 cut(s) 2861
Kzo9I GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
LmnI GCTCC 7 cut(s) 1663, 1967, 2284, 2451, 2864, 3393, 3473
Lsp1109I GCAGC 8 cut(s) 351, 450, 2309, 2312, 2315, 2452, 2455, 2719
LweI GCATC 7 cut(s) 133, 882, 919, 1090, 2338, 2503, 2550
MaeII ACGT 6 cut(s) 832, 1296, 1564, 2148, 2197, 2574
MalI GATC 5 cut(s) 1410, 2608, 3238, 3441, 3684
MboI GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
MfeI CAATTG 2 cut(s) 1181, 2309
MflI RGATCY 2 cut(s) 3236, 3682
MhlI GDGCHC 7 cut(s) 381, 1972, 3155, 3301, 3478, 3599, 3701
MlsI TGGCCA 1 cut(s) 2693
MluNI TGGCCA 1 cut(s) 2693
MlyI GAGTC 4 cut(s) 130, 2003, 2360, 3719
MmeI TCCRAC 2 cut(s) 13, 1470
Mox20I TGGCCA 1 cut(s) 2693
Mph1103I ATGCAT 1 cut(s) 1407
MroI TCCGGA 1 cut(s) 2861
MroXI GAANNNNTTC 1 cut(s) 2930
MscI TGGCCA 1 cut(s) 2693
MslI CAYNNNNRTG 1 cut(s) 3061
Msp20I TGGCCA 1 cut(s) 2693
MspCI CTTAAG 2 cut(s) 1199, 2593
MspI CCGG 4 cut(s) 1037, 2097, 2192, 2862
MspR9I CCNGG 2 cut(s) 461, 2082
MunI CAATTG 2 cut(s) 1181, 2309
Mva1269I GAATGC 4 cut(s) 1327, 1407, 2850, 3655
MvaI CCWGG 2 cut(s) 461, 2082
MvnI CGCG 1 cut(s) 3572
MwoI GCNNNNNNNGC 4 cut(s) 336, 1088, 1322, 2303
NcoI CCATGG 1 cut(s) 301
NdeI CATATG 1 cut(s) 3628
NdeII GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
NlaIV GGNNCC 6 cut(s) 2286, 2428, 2429, 3395, 3459, 3565
NmeAIII GCCGAG 1 cut(s) 2182
NmuCI GTSAC 5 cut(s) 1886, 1995, 2058, 2358, 3613
NsiI ATGCAT 1 cut(s) 1407
NspI RCATGY 5 cut(s) 167, 284, 1457, 2093, 3391
NspV TTCGAA 2 cut(s) 2476, 2934
PaeI GCATGC 2 cut(s) 167, 284
PagI TCATGA 4 cut(s) 498, 1417, 3163, 3309
PaqCI CACCTGC 3 cut(s) 197, 454, 956
PceI AGGCCT 1 cut(s) 464
PciI ACATGT 2 cut(s) 1453, 3387
PcsI WCGNNNNNNNCGW 2 cut(s) 2154, 2994
PctI GAATGC 4 cut(s) 1327, 1407, 2850, 3655
PdmI GAANNNNTTC 1 cut(s) 2930
PflMI CCANNNNNTGG 1 cut(s) 1733
PkrI GCNGC 8 cut(s) 341, 440, 2299, 2302, 2305, 2442, 2445, 2709
PleI GAGTC 4 cut(s) 129, 2002, 2359, 3718
PmaCI CACGTG 1 cut(s) 833
PmlI CACGTG 1 cut(s) 833
PpsI GAGTC 4 cut(s) 129, 2002, 2359, 3718
Ppu21I YACGTR 2 cut(s) 833, 2575
PpuMI RGGWCCY 1 cut(s) 2427
PscI ACATGT 2 cut(s) 1453, 3387
PsiI TTATAA 1 cut(s) 3249
Psp124BI GAGCTC 3 cut(s) 381, 1972, 3701
Psp5II RGGWCCY 1 cut(s) 2427
Psp6I CCWGG 2 cut(s) 459, 2080
PspCI CACGTG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 2293
PspGI CCWGG 2 cut(s) 459, 2080
PspN4I GGNNCC 6 cut(s) 2286, 2428, 2429, 3395, 3459, 3565
PspPI GGNCC 5 cut(s) 1015, 2189, 2427, 3130, 3276
PspPPI RGGWCCY 1 cut(s) 2427
PstNI CAGNNNCTG 1 cut(s) 3617
PsuI RGATCY 2 cut(s) 3236, 3682
RsaI GTAC 3 cut(s) 542, 636, 898
RsaNI GTAC 3 cut(s) 541, 635, 897
RseI CAYNNNNRTG 1 cut(s) 3061
SacI GAGCTC 3 cut(s) 381, 1972, 3701
SatI GCNGC 8 cut(s) 340, 439, 2298, 2301, 2304, 2441, 2444, 2708
Sau3AI GATC 5 cut(s) 1408, 2606, 3236, 3439, 3682
Sau96I GGNCC 5 cut(s) 1015, 2189, 2427, 3130, 3276
SchI GAGTC 4 cut(s) 130, 2003, 2360, 3719
ScrFI CCNGG 2 cut(s) 461, 2082
SduI GDGCHC 7 cut(s) 381, 1972, 3155, 3301, 3478, 3599, 3701
SfaNI GCATC 7 cut(s) 133, 882, 919, 1090, 2338, 2503, 2550
SfcI CTRYAG 2 cut(s) 723, 2954
SfuI TTCGAA 2 cut(s) 2476, 2934
SinI GGWCC 3 cut(s) 2427, 3130, 3276
SmiMI CAYNNNNRTG 1 cut(s) 3061
SmlI CTYRAG 7 cut(s) 1199, 1441, 1699, 2066, 2167, 2333, 2593
SmoI CTYRAG 7 cut(s) 1199, 1441, 1699, 2066, 2167, 2333, 2593
SphI GCATGC 2 cut(s) 167, 284
SseBI AGGCCT 1 cut(s) 464
SsiI CCGC 3 cut(s) 1026, 2539, 2914
SspI AATATT 3 cut(s) 1122, 1394, 3403
SstI GAGCTC 3 cut(s) 381, 1972, 3701
StuI AGGCCT 1 cut(s) 464
StyD4I CCNGG 2 cut(s) 459, 2080
StyI CCWWGG 1 cut(s) 301
TaiI ACGT 6 cut(s) 835, 1299, 1567, 2151, 2200, 2577
TaqI TCGA 9 cut(s) 124, 420, 839, 2373, 2476, 2934, 2988, 2997, 3332
TaqII GACCGA 2 cut(s) 3147, 3293
TscAI CASTG 4 cut(s) 1341, 1384, 3604, 3618
TseFI GTSAC 5 cut(s) 1886, 1995, 2058, 2358, 3613
TseI GCWGC 8 cut(s) 339, 438, 2297, 2300, 2303, 2440, 2443, 2707
Tsp45I GTSAC 5 cut(s) 1886, 1995, 2058, 2358, 3613
TspGWI ACGGA 3 cut(s) 1157, 2677, 3040
TspRI CASTG 4 cut(s) 1341, 1384, 3604, 3618
Van91I CCANNNNNTGG 1 cut(s) 1733
Vha464I CTTAAG 2 cut(s) 1199, 2593
VpaK11BI GGWCC 3 cut(s) 2427, 3130, 3276
XagI CCTNNNNNAGG 2 cut(s) 3204, 3351
XapI RAATTY 9 cut(s) 669, 1616, 1656, 1691, 2071, 2548, 2565, 2879, 3028
XbaI TCTAGA 2 cut(s) 863, 1861
XceI RCATGY 5 cut(s) 167, 284, 1457, 2093, 3391
XmiI GTMKAC 2 cut(s) 1635, 2836
XmnI GAANNNNTTC 1 cut(s) 2930
Zsp2I ATGCAT 1 cut(s) 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.