Rmu_sc0002212.1_g000007

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002212.1
OG0000042
Physical Location & Seq
Forward (+)
31337 .. 35170
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002212.1_g000007.1.cds

Sequence Viewer

Length: 3738 bp
atggcgtttcttattggtattggcaccagaattgttgaaaaacttgtggacttaacggttgcgccagttggacgccaagtgggttatctaatctactacaatcacaacgtcaaaactttagagaatcgattgaatgacttggtcattacgagtcagagtgtggagcacagggttggtgaagaaaagaaaaacattagagaagttgaagcccaagtcaacaaatggctgacagatgtccaaaatatcacaggagaggcaaacgagatcttgaatgaagaacacaaagaaaaaatgaagtgtctttatggattatgtcctaatttagtgcttcgtcatcagctaagtcgaaaatcaacaaaattgcttcccgacattgttgaactctatgggaaaaaagactttagcacttttgtagagtccttcgattcaagaactttggtggtgaaccaaataatggatctattcagaaattgtcctaattttaacatgataggtgtgtatgggcttggtggtgttgggaagaccacacttgtcaaagaagtttctcggcaagctacaaaagacaaaacattatttgacgatgtggttatgatactggatgtaaaacaaaatccaagcatcccaagaattcaaaaggaaattgctgagaagttaggtcttgagcttcctgaaattgagactattcgaggaagagcatgtcgtctatgtagcaggataaaagaccaaaagactcttgtaattttagacgatgtgtgggaaagaattgatttggaggctgtgggactttctggtgtggcgacttgtaaagtattgctgacatcaagaatgcgagatgtattatcaagtgagatgcatacacaaaaagagtttccgcttgatcttttaggtgaagaagaagcttggaatttgttcgagaagaaggcaggtgatgttattaaggatcctgccataaaaaatgtggcaaccaaagtagccaaaagatgtggaggtttgccggttttagttgtcactgttgccagtgccttgaaaaatagaagtgcattacatgaatggaaagatgcgttgagatgtttaaaaatgtttgacaaagaagaattcacagaaaagacatatttgactctagagtggagttatagtcagttaaatgatgaggagcttaagtcattgttcttgctctgtggaatttatgtttattctccaaatgctatccatatcgattacctattgaaatatggcattggtttgggtttgtttaaaaacctcaatacaacgggagaagcatgggatgcattaaattcattgcttgagaaacttaaggattcttgtctactgcttgaccatgaagatagtgggtgtgtcaagatgcatgatcttgtgtatgttgttgctaaatgtatattatcaagggataaaaatgtgttgaaggtaagtgatgaagatgagtttaaagaatggctagataataaggatttctctgaaaagtgcactatgatcaccctcaaaatgtccagtatccccaagcttcctgaagttttgcaatgcacagaactaaagttacttaatcttacagctactgttgtggattactccttagaaatcccgtgcaacttttttaaaggaacaacaaaactcaaagtgttggatttaactagtttgagtatctcgtcattacctccatctcttcagttcctaaaaagtctgaagacattgtgtctagatcaatgcaccttgggagatatagctctaattggccaactacaaagcttagaaatgcttagccttttaagatccaagtttaaagagttgcccaaagaaataggtcaattgacttgtctacgattgctggatttgagtggctgctctcaactggaacttatttcacctaatgttctatcaagcttgaaaagattagaagacttgagaatgggaaatagctttaacagatgggaggctgaaggagtcatcagtactgaaagaagtaatgcaaaccttgaagagctaaagcacttgcatcaactaactgcattacaactacatatcccagatgatgttattcttccagtagatttgttcaccactaagttggagagattccaaatatgtattggttctgcgtggaaatggtctgatgtcgatgaaacccttaatgcattaaaagtcaaatacaccactggcaataaattggaccaaggtttaaaaatgctactcaagagaactgaagacttgtatttggagggcgtggagggtgttaataatagtgctttatatgagttaggtactgaaggttgtcagcaactgaaacatcttcatgtgacaatatggaacaatcaactttctctagagagttcaaaaaatctagagacaatagaaattgtttcatgtgacaattggaaaagtatttttccagcctcagtggccagaagtcttcaaaaattgaggagtctgaaagtccagaattgtggggtagaggaaatcatctcaaaagaagagggcgtagaaaaattaatgcctgatcagttcttcccaaagctaacatgtttggaacttacaagtctattccaacttgagagattctatcaaaagatgcctgctatcaactggccactaaaaacattagtgttgtctgattgtccgaaagtggatatctttgccgcggaatttttagaatatcctgttctatttgagaagagttcattttccaaactggaagttttgaccttcggccccgcgaacatctggtacggtctacctgcccatgagaaagctctttttcctgctaccagtacagatgggtcccttccacatttgagaacgttgaggctacatggaatggagaagtttatgcgtctctgggagaacaccgaacctgcagctagctcagctttttcaaagatggaaactcttgaggtgaagaactctggattgactaatctagagttgtctgcaatatccttccagaatctaacaattttagaagtaaccttttgctggcgattgcaatatttgaccacttattcggtagctcgaagtctcgtgcaactcaaaactttgaaagttgacgaatgtaaaaatatgaaagaaatcttcacaagcgaaggaatgggagaaaatgaagatgcaagtaaatgtgagattgagttcagccagttggaaagtttggaacttagtgatttagtaagtttggaacggttttgctcgagcaattgcagagtgaaggtcccaatcttgggaactctaaaggtgaattggtgcccgttcaaattgaagatttcctccgataaggtacttgaagttgatggtgtccaaactgaatcatggtcgcagagcatgtctatgctggaacaggacaacaacagacgtctgcgggaagaattaagggccaaagaaggtaagagcctcccggagactccggttgttctcgcgctgcctgagactggtccttctagctcgttgactaccaagagaactgctgatcttcctgtggaggtgatagcccagcttaatgctctgcttggaattgatctggcaactcctgccgtggacaagaagagctcttctaaccacatagtggctgagctaactgcccaacttgaggcgagaagttctgagcttgttgccggcagctctcaagttgaggcggaatgtcaagaagtcatgggccgggaggcggaacttgctaacataagacaactaatcaaactgcttgaagctcgggccgctactcttgaggcgcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1245

Amino Acids

140.36

Weight (kDa)

5.53

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 914
AatII GACGTC 1 cut(s) 3361
Acc36I ACCTGC 3 cut(s) 914, 2758, 2875
AccB1I GGYRCC 2 cut(s) 23, 3249
AccB7I CCANNNNNTGG 2 cut(s) 454, 3568
AccI GTMKAC 3 cut(s) 1327, 1834, 2746
AccII CGCG 4 cut(s) 2654, 2729, 3422, 3733
AciI CCGC 8 cut(s) 872, 2652, 2654, 2727, 3364, 3638, 3668, 3717
AclI AACGTT 1 cut(s) 2813
AclWI GGATC 4 cut(s) 465, 935, 948, 1782
AcoI YGGCCR 3 cut(s) 1750, 2415, 2600
AcsI RAATTY 6 cut(s) 627, 904, 1094, 1182, 1294, 2657
AcuI CTGAAG 6 cut(s) 1548, 1667, 1721, 1974, 2238, 2301
AcyI GRCGYC 2 cut(s) 73, 3358
AdeI CACNNNGTG 1 cut(s) 3568
AfaI GTAC 5 cut(s) 1969, 2278, 2741, 2785, 3285
AfiI CCNNNNNNNGG 8 cut(s) 454, 2988, 3226, 3227, 3434, 3568, 3592, 3667
AflII CTTAAG 2 cut(s) 1157, 1313
AflIII ACRYGT 1 cut(s) 2534
AhdI GACNNNNNGTC 1 cut(s) 1710
AhlI ACTAGT 1 cut(s) 1649
Alw21I GWGCWC 3 cut(s) 168, 1487, 3554
Alw26I GTCTC 6 cut(s) 671, 2354, 2852, 3035, 3398, 3425
Alw44I GTGCAC 1 cut(s) 1483
AlwI GGATC 4 cut(s) 465, 935, 948, 1782
AlwNI CAGNNNCTG 2 cut(s) 1574, 2296
Ama87I CYCGRG 2 cut(s) 3196, 3711
AoxI GGCC 7 cut(s) 1750, 2415, 2600, 2722, 3378, 3658, 3714
ApaLI GTGCAC 1 cut(s) 1483
ApeKI GCWGC 4 cut(s) 1857, 2870, 3424, 3621
ApoI RAATTY 6 cut(s) 627, 904, 1094, 1182, 1294, 2657
ArsI GACNNNNNNTTYG 2 cut(s) 2998, 3030
AseI ATTAAT 1 cut(s) 2504
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 4 cut(s) 64, 3424, 3733, 3735
AspS9I GGNCC 8 cut(s) 2185, 2723, 2793, 3217, 3378, 3437, 3658, 3714
AsuC2I CCSGG 2 cut(s) 3401, 3662
AsuNHI GCTAGC 1 cut(s) 2873
AvaI CYCGRG 2 cut(s) 3196, 3711
AvaII GGWCC 4 cut(s) 2185, 2793, 3217, 3437
BaeGI GKGCMC 2 cut(s) 1487, 3254
BalI TGGCCA 3 cut(s) 1752, 2417, 2602
BamHI GGATCC 1 cut(s) 940
BanI GGYRCC 2 cut(s) 23, 3249
BanII GRGCYC 1 cut(s) 3554
BauI CACGAG 1 cut(s) 3032
BbsI GAAGAC 5 cut(s) 527, 1709, 1920, 2226, 2417
Bbv12I GWGCWC 3 cut(s) 168, 1487, 3554
BbvI GCAGC 4 cut(s) 1844, 2882, 3411, 3633
BccI CCATC 5 cut(s) 1684, 1938, 2783, 2887, 3290
BceAI ACGGC 1 cut(s) 3521
BciVI GTATCC 1 cut(s) 1523
BclI TGATCA 2 cut(s) 1491, 2512
BcnI CCSGG 2 cut(s) 3401, 3662
BcoDI GTCTC 6 cut(s) 671, 2354, 2852, 3035, 3398, 3425
BcuI ACTAGT 1 cut(s) 1649
BfaI CTAG 9 cut(s) 1121, 1457, 1650, 1715, 2339, 2357, 2874, 2933, 3444
BfmI CTRYAG 1 cut(s) 2868
BfrI CTTAAG 2 cut(s) 1157, 1313
BfuAI ACCTGC 3 cut(s) 914, 2758, 2875
BfuI GTATCC 1 cut(s) 1523
BglI GCCNNNNNGGC 1 cut(s) 2414
BglII AGATCT 1 cut(s) 264
BisI GCNGC 6 cut(s) 1858, 2652, 2871, 3425, 3622, 3717
BlpI GCTNAGC 3 cut(s) 1775, 2878, 3573
BlsI GCNGC 6 cut(s) 1859, 2653, 2872, 3426, 3623, 3718
BmcAI AGTACT 1 cut(s) 1969
Bme1390I CCNGG 2 cut(s) 3401, 3662
Bme18I GGWCC 4 cut(s) 2185, 2793, 3217, 3437
BmeRI GACNNNNNGTC 1 cut(s) 1710
BmeT110I CYCGRG 2 cut(s) 3196, 3711
BmgT120I GGNCC 8 cut(s) 2185, 2723, 2793, 3217, 3378, 3437, 3658, 3714
BmiI GGNNCC 7 cut(s) 25, 942, 2725, 2794, 2795, 3219, 3251
BmrFI CCNGG 2 cut(s) 3401, 3662
BmsI GCATC 8 cut(s) 627, 840, 1048, 1276, 1353, 2020, 2574, 3106
BmtI GCTAGC 1 cut(s) 2877
BoxI GACNNNNGTC 1 cut(s) 233
BpiI GAAGAC 5 cut(s) 527, 1709, 1920, 2226, 2417
Bpu1102I GCTNAGC 3 cut(s) 1775, 2878, 3573
BpuEI CTTGAG 8 cut(s) 680, 1325, 1939, 2192, 2585, 2924, 3611, 3612
BpuMI CCSGG 2 cut(s) 3401, 3662
Bsa29I ATCGAT 2 cut(s) 127, 1215
BsaHI GRCGYC 2 cut(s) 73, 3358
BsaJI CCNNGG 4 cut(s) 1728, 2188, 2652, 3537
BsaWI WCCGGW 1 cut(s) 3409
BsaXI ACNNNNNCTCC 4 cut(s) 1120, 1145, 1150, 1175
Bsc4I CCNNNNNNNGG 8 cut(s) 454, 2988, 3226, 3227, 3434, 3568, 3592, 3667
Bse118I RCCGGY 2 cut(s) 994, 3617
Bse3DI GCAATG 2 cut(s) 1298, 1544
BseCI ATCGAT 2 cut(s) 127, 1215
BseDI CCNNGG 4 cut(s) 1728, 2188, 2652, 3537
BseGI GGATG 3 cut(s) 604, 618, 1291
BseLI CCNNNNNNNGG 8 cut(s) 454, 2988, 3226, 3227, 3434, 3568, 3592, 3667
BseMI GCAATG 2 cut(s) 1298, 1544
BseMII CTCAG 6 cut(s) 636, 2424, 2892, 3420, 3564, 3597
BsePI GCGCGC 1 cut(s) 3731
BseRI GAGGAG 2 cut(s) 1166, 2452
BseSI GKGCMC 2 cut(s) 1487, 3254
BseXI GCAGC 4 cut(s) 1844, 2882, 3411, 3633
BseYI CCCAGC 1 cut(s) 3495
Bsh1236I CGCG 4 cut(s) 2654, 2729, 3422, 3733
BshFI GGCC 7 cut(s) 1752, 2417, 2602, 2724, 3380, 3660, 3716
BshNI GGYRCC 2 cut(s) 23, 3249
BshVI ATCGAT 2 cut(s) 127, 1215
BsiHKAI GWGCWC 3 cut(s) 168, 1487, 3554
BsiHKCI CYCGRG 2 cut(s) 3196, 3711
BsiSI CCGG 5 cut(s) 995, 3401, 3410, 3618, 3661
BslFI GGGAC 3 cut(s) 795, 2779, 3203
BslI CCNNNNNNNGG 8 cut(s) 454, 2988, 3226, 3227, 3434, 3568, 3592, 3667
BsmAI GTCTC 6 cut(s) 671, 2354, 2852, 3035, 3398, 3425
BsmBI CGTCTC 1 cut(s) 2852
BsmFI GGGAC 3 cut(s) 795, 2779, 3203
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 7 cut(s) 1752, 2417, 2602, 2724, 3380, 3660, 3716
BsoBI CYCGRG 2 cut(s) 3196, 3711
Bsp1286I GDGCHC 4 cut(s) 168, 1487, 3254, 3554
Bsp1720I GCTNAGC 3 cut(s) 1775, 2878, 3573
BspACI CCGC 8 cut(s) 872, 2652, 2654, 2727, 3364, 3638, 3668, 3717
BspANI GGCC 7 cut(s) 1752, 2417, 2602, 2724, 3380, 3660, 3716
BspCNI CTCAG 6 cut(s) 637, 2423, 2891, 3421, 3565, 3598
BspDI ATCGAT 2 cut(s) 127, 1215
BspFNI CGCG 4 cut(s) 2654, 2729, 3422, 3733
BspLI GGNNCC 7 cut(s) 25, 942, 2725, 2794, 2795, 3219, 3251
BspMAI CTGCAG 1 cut(s) 2872
BspMI ACCTGC 3 cut(s) 914, 2758, 2875
BspOI GCTAGC 1 cut(s) 2877
BspPI GGATC 4 cut(s) 465, 935, 948, 1782
BspQI GCTCTTC 4 cut(s) 685, 1989, 3542, 3559
BspT107I GGYRCC 2 cut(s) 23, 3249
BspTI CTTAAG 2 cut(s) 1157, 1313
BsrDI GCAATG 2 cut(s) 1298, 1544
BsrFI RCCGGY 2 cut(s) 994, 3617
BssAI RCCGGY 2 cut(s) 994, 3617
BssECI CCNNGG 4 cut(s) 1728, 2188, 2652, 3537
BssHII GCGCGC 1 cut(s) 3731
BssNI GRCGYC 2 cut(s) 73, 3358
BssSI CACGAG 1 cut(s) 3032
BssT1I CCWWGG 2 cut(s) 1728, 2188
Bst2BI CACGAG 1 cut(s) 3032
Bst4CI ACNGT 5 cut(s) 58, 1012, 1576, 2744, 3189
Bst6I CTCTTC 7 cut(s) 685, 1686, 1989, 2481, 2681, 3542, 3559
BstACI GRCGYC 2 cut(s) 73, 3358
BstAFI CTTAAG 2 cut(s) 1157, 1313
BstAPI GCANNNNNTGC 2 cut(s) 1286, 3533
BstC8I GCNNGC 6 cut(s) 552, 2589, 2875, 2990, 3619, 3733
BstDSI CCRYGG 2 cut(s) 2652, 3537
BstF5I GGATG 3 cut(s) 604, 618, 1291
BstFNI CGCG 4 cut(s) 2654, 2729, 3422, 3733
BstHHI GCGC 4 cut(s) 64, 3424, 3733, 3735
BstMAI GTCTC 6 cut(s) 671, 2354, 2852, 3035, 3398, 3425
BstMWI GCNNNNNNNGC 6 cut(s) 1286, 2414, 2879, 3533, 3674, 3716
BstNSI RCATGY 3 cut(s) 699, 2538, 3331
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 3399, 3660
BstSFI CTRYAG 1 cut(s) 2868
BstSLI GKGCMC 2 cut(s) 1487, 3254
BstUI CGCG 4 cut(s) 2654, 2729, 3422, 3733
BstV1I GCAGC 4 cut(s) 1844, 2882, 3411, 3633
BstV2I GAAGAC 5 cut(s) 527, 1709, 1920, 2226, 2417
BstX2I RGATCY 4 cut(s) 264, 457, 940, 1787
BstXI CCANNNNNNTGG 2 cut(s) 2083, 2459
BstYI RGATCY 4 cut(s) 264, 457, 940, 1787
Bsu15I ATCGAT 2 cut(s) 127, 1215
BsuI GTATCC 1 cut(s) 1523
BsuRI GGCC 7 cut(s) 1752, 2417, 2602, 2724, 3380, 3660, 3716
BsuTUI ATCGAT 2 cut(s) 127, 1215
BtgI CCRYGG 2 cut(s) 2652, 3537
BtsCI GGATG 3 cut(s) 604, 618, 1291
BtsIMutI CAGTG 4 cut(s) 1008, 1024, 2169, 2418
BveI ACCTGC 3 cut(s) 914, 2758, 2875
Cac8I GCNNGC 6 cut(s) 552, 2589, 2875, 2990, 3619, 3733
CaiI CAGNNNCTG 2 cut(s) 1574, 2296
CfoI GCGC 4 cut(s) 64, 3424, 3733, 3735
Cfr10I RCCGGY 2 cut(s) 994, 3617
Cfr13I GGNCC 8 cut(s) 2185, 2723, 2793, 3217, 3378, 3437, 3658, 3714
Cfr42I CCGCGG 1 cut(s) 2655
ClaI ATCGAT 2 cut(s) 127, 1215
CseI GACGC 2 cut(s) 81, 2834
Csp6I GTAC 5 cut(s) 1968, 2277, 2740, 2784, 3284
CspCI CAANNNNNGTGG 2 cut(s) 964, 999
CviQI GTAC 5 cut(s) 1968, 2277, 2740, 2784, 3284
DraI TTTAAA 6 cut(s) 1074, 1255, 1447, 1615, 1798, 2196
DraIII CACNNNGTG 1 cut(s) 3568
DriI GACNNNNNGTC 1 cut(s) 1710
EaeI YGGCCR 3 cut(s) 1750, 2415, 2600
Eam1104I CTCTTC 7 cut(s) 685, 1686, 1989, 2481, 2681, 3542, 3559
Eam1105I GACNNNNNGTC 1 cut(s) 1710
EarI CTCTTC 7 cut(s) 685, 1686, 1989, 2481, 2681, 3542, 3559
EciI GGCGGA 2 cut(s) 3653, 3683
Ecl136II GAGCTC 1 cut(s) 3552
Eco130I CCWWGG 2 cut(s) 1728, 2188
Eco24I GRGCYC 1 cut(s) 3554
Eco32I GATATC 1 cut(s) 2644
Eco47I GGWCC 4 cut(s) 2185, 2793, 3217, 3437
Eco53kI GAGCTC 1 cut(s) 3552
Eco57I CTGAAG 6 cut(s) 1548, 1667, 1721, 1974, 2238, 2301
Eco88I CYCGRG 2 cut(s) 3196, 3711
EcoICRI GAGCTC 1 cut(s) 3552
EcoO109I RGGNCCY 2 cut(s) 2793, 3217
EcoRI GAATTC 2 cut(s) 627, 1094
EcoRV GATATC 1 cut(s) 2644
EcoT14I CCWWGG 2 cut(s) 1728, 2188
EcoT22I ATGCAT 4 cut(s) 855, 1291, 1368, 2152
EcoT38I GRGCYC 1 cut(s) 3554
ErhI CCWWGG 2 cut(s) 1728, 2188
Esp3I CGTCTC 1 cut(s) 2852
FaqI GGGAC 3 cut(s) 795, 2779, 3203
FauI CCCGC 2 cut(s) 2734, 3357
FbaI TGATCA 2 cut(s) 1491, 2512
FblI GTMKAC 3 cut(s) 1327, 1834, 2746
Fnu4HI GCNGC 6 cut(s) 1858, 2652, 2871, 3425, 3622, 3717
FokI GGATG 3 cut(s) 605, 611, 1298
FriOI GRGCYC 1 cut(s) 3554
Fsp4HI GCNGC 6 cut(s) 1858, 2652, 2871, 3425, 3622, 3717
FspBI CTAG 9 cut(s) 1121, 1457, 1650, 1715, 2339, 2357, 2874, 2933, 3444
GlaI GCGC 4 cut(s) 63, 3423, 3732, 3734
GluI GCNGC 6 cut(s) 1858, 2652, 2871, 3425, 3622, 3717
GsaI CCCAGC 1 cut(s) 3499
HaeIII GGCC 7 cut(s) 1752, 2417, 2602, 2724, 3380, 3660, 3716
HapII CCGG 5 cut(s) 995, 3401, 3410, 3618, 3661
HgaI GACGC 2 cut(s) 81, 2834
HhaI GCGC 4 cut(s) 64, 3424, 3733, 3735
Hin1I GRCGYC 2 cut(s) 73, 3358
Hin6I GCGC 4 cut(s) 62, 3422, 3731, 3733
HinP1I GCGC 4 cut(s) 62, 3422, 3731, 3733
HincII GTYRAC 3 cut(s) 217, 3058, 3453
HindII GTYRAC 3 cut(s) 217, 3058, 3453
HindIII AAGCTT 4 cut(s) 897, 1520, 1762, 1897
HpaII CCGG 5 cut(s) 995, 3401, 3410, 3618, 3661
HpyCH4III ACNGT 5 cut(s) 58, 1012, 1576, 2744, 3189
HpyCH4IV ACGT 3 cut(s) 108, 2813, 3358
HpyF10VI GCNNNNNNNGC 6 cut(s) 1286, 2414, 2879, 3533, 3674, 3716
HpySE526I ACGT 3 cut(s) 108, 2813, 3358
Hsp92I GRCGYC 2 cut(s) 73, 3358
HspAI GCGC 4 cut(s) 62, 3422, 3731, 3733
KflI GGGWCCC 1 cut(s) 2793
KroI GCCGGC 1 cut(s) 3617
KroNI GCCGGC 1 cut(s) 3619
Ksp22I TGATCA 2 cut(s) 1491, 2512
KspI CCGCGG 1 cut(s) 2655
LguI GCTCTTC 4 cut(s) 685, 1989, 3542, 3559
LmnI GCTCC 2 cut(s) 163, 1153
Lsp1109I GCAGC 4 cut(s) 1844, 2882, 3411, 3633
LweI GCATC 8 cut(s) 627, 840, 1048, 1276, 1353, 2020, 2574, 3106
MaeI CTAG 9 cut(s) 1121, 1457, 1650, 1715, 2339, 2357, 2874, 2933, 3444
MaeII ACGT 3 cut(s) 108, 2813, 3358
MaeIII GTNAC 5 cut(s) 1006, 1554, 2311, 2381, 2977
MfeI CAATTG 3 cut(s) 1823, 2386, 3202
MflI RGATCY 4 cut(s) 264, 457, 940, 1787
MhlI GDGCHC 4 cut(s) 168, 1487, 3254, 3554
MlsI TGGCCA 3 cut(s) 1752, 2417, 2602
MluNI TGGCCA 3 cut(s) 1752, 2417, 2602
MlyI GAGTC 7 cut(s) 160, 425, 724, 1111, 1968, 2449, 3400
MmeI TCCRAC 5 cut(s) 49, 1620, 2064, 2584, 3129
Mox20I TGGCCA 3 cut(s) 1752, 2417, 2602
Mph1103I ATGCAT 4 cut(s) 855, 1291, 1368, 2152
MroNI GCCGGC 1 cut(s) 3617
MroXI GAANNNNTTC 1 cut(s) 908
MscI TGGCCA 3 cut(s) 1752, 2417, 2602
MslI CAYNNNNRTG 2 cut(s) 2307, 3332
Msp20I TGGCCA 3 cut(s) 1752, 2417, 2602
MspA1I CMGCKG 1 cut(s) 2654
MspCI CTTAAG 2 cut(s) 1157, 1313
MspI CCGG 5 cut(s) 995, 3401, 3410, 3618, 3661
MspR9I CCNGG 2 cut(s) 3401, 3662
MunI CAATTG 3 cut(s) 1823, 2386, 3202
Mva1269I GAATGC 1 cut(s) 831
MvnI CGCG 4 cut(s) 2654, 2729, 3422, 3733
MwoI GCNNNNNNNGC 6 cut(s) 1286, 2414, 2879, 3533, 3674, 3716
NaeI GCCGGC 1 cut(s) 3619
NciI CCSGG 2 cut(s) 3401, 3662
NgoMIV GCCGGC 1 cut(s) 3617
NheI GCTAGC 1 cut(s) 2873
NlaIV GGNNCC 7 cut(s) 25, 942, 2725, 2794, 2795, 3219, 3251
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 3 cut(s) 1006, 2311, 2381
NsiI ATGCAT 4 cut(s) 855, 1291, 1368, 2152
NspI RCATGY 3 cut(s) 699, 2538, 3331
PaeR7I CTCGAG 1 cut(s) 3196
PaqCI CACCTGC 1 cut(s) 914
PauI GCGCGC 1 cut(s) 3731
PciI ACATGT 1 cut(s) 2534
PciSI GCTCTTC 4 cut(s) 685, 1989, 3542, 3559
PctI GAATGC 1 cut(s) 831
PdiI GCCGGC 1 cut(s) 3619
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 7 cut(s) 124, 425, 1319, 2091, 2571, 2959, 3311
PflFI GACNNNGTC 1 cut(s) 140
PflMI CCANNNNNTGG 2 cut(s) 454, 3568
PfoI TCCNGGA 1 cut(s) 3399
PkrI GCNGC 6 cut(s) 1859, 2653, 2872, 3426, 3623, 3718
PleI GAGTC 7 cut(s) 159, 424, 724, 1111, 1967, 2448, 3400
PpsI GAGTC 7 cut(s) 159, 424, 724, 1111, 1967, 2448, 3400
PpuMI RGGWCCY 2 cut(s) 2793, 3217
PscI ACATGT 1 cut(s) 2534
PshAI GACNNNNGTC 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 2504
Psp124BI GAGCTC 1 cut(s) 3554
Psp1406I AACGTT 1 cut(s) 2813
Psp5II RGGWCCY 2 cut(s) 2793, 3217
PspFI CCCAGC 1 cut(s) 3495
PspN4I GGNNCC 7 cut(s) 25, 942, 2725, 2794, 2795, 3219, 3251
PspPI GGNCC 8 cut(s) 2185, 2723, 2793, 3217, 3378, 3437, 3658, 3714
PspPPI RGGWCCY 2 cut(s) 2793, 3217
PspXI VCTCGAGB 1 cut(s) 3196
PsrI GAACNNNNNNTAC 4 cut(s) 1539, 1571, 2723, 2755
PstI CTGCAG 1 cut(s) 2872
PstNI CAGNNNCTG 2 cut(s) 1574, 2296
PsuI RGATCY 4 cut(s) 264, 457, 940, 1787
PsyI GACNNNGTC 1 cut(s) 140
PteI GCGCGC 1 cut(s) 3731
RsaI GTAC 5 cut(s) 1969, 2278, 2741, 2785, 3285
RsaNI GTAC 5 cut(s) 1968, 2277, 2740, 2784, 3284
RseI CAYNNNNRTG 2 cut(s) 2307, 3332
SacI GAGCTC 1 cut(s) 3554
SacII CCGCGG 1 cut(s) 2655
SapI GCTCTTC 4 cut(s) 685, 1989, 3542, 3559
SatI GCNGC 6 cut(s) 1858, 2652, 2871, 3425, 3622, 3717
Sau96I GGNCC 8 cut(s) 2185, 2723, 2793, 3217, 3378, 3437, 3658, 3714
ScaI AGTACT 1 cut(s) 1969
SchI GAGTC 7 cut(s) 160, 425, 724, 1111, 1968, 2449, 3400
ScrFI CCNGG 2 cut(s) 3401, 3662
SduI GDGCHC 4 cut(s) 168, 1487, 3254, 3554
SfaNI GCATC 8 cut(s) 627, 840, 1048, 1276, 1353, 2020, 2574, 3106
SfcI CTRYAG 1 cut(s) 2868
Sfr274I CTCGAG 1 cut(s) 3196
Sfr303I CCGCGG 1 cut(s) 2655
SgrBI CCGCGG 1 cut(s) 2655
SinI GGWCC 4 cut(s) 2185, 2793, 3217, 3437
SlaI CTCGAG 1 cut(s) 3196
SmiMI CAYNNNNRTG 2 cut(s) 2307, 3332
SpeI ACTAGT 1 cut(s) 1649
SsiI CCGC 8 cut(s) 872, 2652, 2654, 2727, 3364, 3638, 3668, 3717
SspI AATATT 1 cut(s) 3002
SspMI CTAG 9 cut(s) 1121, 1457, 1650, 1715, 2339, 2357, 2874, 2933, 3444
SstI GAGCTC 1 cut(s) 3554
StyD4I CCNGG 2 cut(s) 3399, 3660
StyI CCWWGG 2 cut(s) 1728, 2188
TaaI ACNGT 5 cut(s) 58, 1012, 1576, 2744, 3189
TaiI ACGT 3 cut(s) 111, 2816, 3361
TaqI TCGA 9 cut(s) 127, 346, 423, 685, 912, 1215, 2133, 3025, 3197
TatI WGTACW 2 cut(s) 1967, 2783
TauI GCSGC 2 cut(s) 2654, 3719
TfiI GAWTC 7 cut(s) 124, 425, 1319, 2091, 2571, 2959, 3311
TscAI CASTG 4 cut(s) 1015, 1024, 2176, 2418
TseFI GTSAC 3 cut(s) 1006, 2311, 2381
TseI GCWGC 4 cut(s) 1857, 2870, 3424, 3621
Tsp45I GTSAC 3 cut(s) 1006, 2311, 2381
TspRI CASTG 4 cut(s) 1015, 1024, 2176, 2418
Tth111I GACNNNGTC 1 cut(s) 140
Van91I CCANNNNNTGG 2 cut(s) 454, 3568
Vha464I CTTAAG 2 cut(s) 1157, 1313
VneI GTGCAC 1 cut(s) 1483
VpaK11BI GGWCC 4 cut(s) 2185, 2793, 3217, 3437
VspI ATTAAT 1 cut(s) 2504
XapI RAATTY 6 cut(s) 627, 904, 1094, 1182, 1294, 2657
XbaI TCTAGA 5 cut(s) 1120, 1714, 2338, 2356, 2932
XceI RCATGY 3 cut(s) 699, 2538, 3331
XcmI CCANNNNNNNNNTGG 3 cut(s) 955, 1346, 2102
XhoI CTCGAG 1 cut(s) 3196
XmiI GTMKAC 3 cut(s) 1327, 1834, 2746
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 9 cut(s) 1121, 1457, 1650, 1715, 2339, 2357, 2874, 2933, 3444
ZraI GACGTC 1 cut(s) 3359
ZrmI AGTACT 1 cut(s) 1969
Zsp2I ATGCAT 4 cut(s) 855, 1291, 1368, 2152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.