RchiOBHm_Chr4g0397781

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000042
Physical Location & Seq
Reverse (-)
14177481 .. 14194195
16715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37003

Sequence Viewer

Length: 4038 bp
ATGGAGTTTCTTGTTGCAATTGGTACTGGAATTGTTGGAAAGATTGCTGAGTACACAGTTGCCCCAGTTGCACGCCAAGTGGGTTACCTAATCCATTACAACAGAAACCTCAAAAAATTACAGAGTCAATTGAGCGACTTGGATGCTACAAGAGAGAGTGTGGAGCGCAAGATTGATCAAGAAGAAAGAAGAGGGAGAAAAGTTGAAGCTTTTGTAACCAACTGGCTGAAGGATGTGAACAAGATTACTGGGGAGGCAAAAGATATCTTGAAAGATGAACGCCATGTCAAGTGTCTCCATGGCTTTTGTCCTAATTTAAAGCTCCGTCATCAGCTAAGCAGGAAGTCAACAAAATTGGTTCAGGATGTTGCTGAACTCCATGAAAAGAAAGATTTTTCCAGTTTTGCATACGAGGTTAACCCTAAAGAAGTGTGCAGCATACCTACTAAAGATATCGAGGTGTTTGATTCCAGGATCTCAGTCGTGAAGGAAATCATGGATGAACTTAGAAATTCTAAGATTTGCATGATTGGGGTATATGGTATTGGGGGTGTTGGGAAAACCACACTTGTCAAACAAGTTTATAGGCAAGTTACAGAACATGAGAAGTTGTTTGATGATGTGGTTTTGGTACTAGATGTGAAGAAGAATCCAAGCATTGAAAGACTTCAAAAAGAGATTGCTGAGAAGTTAGGTATGGACCATCGTGAGAATGAGACAGAAGCTGGAAGAGCACGCTATTTATGCGACAGGATAAAAGGCAAGAAGATGCTTCTAATTTTAGATGATGTATGGGAAAGAATTGACTTGGAGTCTGTGGGGCTTCCTCCCTTATCCACTCTTAAAATACTTTTGACATCACGGAGTGGAAGAGTATTATCTTCTGATATGGGTACACAAAAAGAGTTTCCTCTTGACGTTTTAGACGAAAAAGAAACTTGGACTTTGTTTGAGAAGATGTCGGGTGAGATTGTTAAAAATGTTGCTATACAAAGTATAGCAACCAAAGTAGCCAAAAGGTGTGGAGGTTTGCCAGTATTGGTTGTTACAGTTGCAAGAGCTCTAAAAAATGGTACAATACATGAATGGAAAGATGCCCTCAGACGCCTAAAAAAGTTCGATGGACAAGGATTGACAGAGAAAGCATACTCTGCTATTGAGTGGAATTATAGTAAATTGGATAATGAGGAGCTCAAGTCATTGTTCATACTTTGTGGAGTTGTGGTTGGTGCCTCCAACACTCTTTTTATCTCTGACTTGTGGAAATATAGTATGGGTTTGGGTTTGTTAAAAGATGTCGACACAGTAGGAGAAGCGTGGGATGCATTGTGTTCGATGATTGAACAACTCAAGTACTCTTGTCTATTGCTAGAGAGTGATGATAATACGCTTGTTAGAATGCATGATCTTGTAAAAGATGTTGCTAAGAGAATTGCTTCTAGAGAGCAACACGTCTTATCATTATCACCTGGAAGTGAGTTGAAAGAATGGCCAAACAAGGATTTCTGTTCAAAGTGCACTATGATCTCTCTTGACCAATGTGATATCCCCGAGTTTCCTGAAGTTTTGCAATGCCAAGAACTGACACTGTTTCTTTTAGATAATGTAGTCCAGGAAATCCCATGCAATCTTTTTAGAAAGATGAAAAAACTCAGGGTGTTGGATTTAACTAGATTCAGCATCCCATTGCTGCCTTCATCTCTTCAATTCCTAGAAAGTCTTCAAACGTTGTGTTTGGATCAATGCACATTGGGAGATGTAACTCTGCTCGGACAGCTACAAAACTTGGAAATTCTCAGCTTTCTATACTCCAAATTCAAAGAGTTGCCCAAAGAAATTGGGCTACTAACACGTCTGCGATTGTTGGATTTGACTGGCTGCTCTCAACTCGAAGTGATTTCACCTAATGTTCTATCAAGCTTGAAAAGATTAGAGCACTTGAGAATGAGAAATAGTTTTAACGGGTGGGAGGCTGGAGGAGTCATCGACACAGAAGGAAGTAATGCAAATCTTGAAGAACTAAAGAACTTGCCTCACCTAACCGAATTACAACTACATATCCCAAATGCTAACATTCTTCCACCAGATTTATTCACTGGTTGTAAGTTAGTGAGATTCCAAATATGTATTGGCTCTGTGTGGAAATGGGATGATGTGGATGAAGCCATCAATGCACTAAAGCTCCAGTTCACTGCCAGCAATCAATTTGACCAAGGACTAGAAATGTTGCTAAAGAGAACTGAAGACTTGTACTTGGAGGGGATGGAGGGTGTTTATAGCAGTATTGTATATCAACTAGGTGCTGAAGGTTCTCACAATCTGAAGCATCTGCATGTCCAAAACAATGTTGAATTTACCAAATTTTTGTCTATCATAAACGGGAAGGTTATGTATCCCAACTTAACATGGTTGGCGGTGAATGACCTCAATGGTTTAAAATTCTTGTTATCATCTTCAATGGCCAGAAGCCTTGCACAACTCAAACGTTTGCAGGTATCAGGATGTCAAACAATGGAAGAGATAGTATCATTAGATGAATCTGATGAAGAAATTGTAGACAACTTATTTTGCCATGTACAAGATCTGGAGTTAAAGGACCTTCCAAATCTCACTAAATTCTGCTCAAGAAATTATACTGAACTTTCAAATCCATCCATTGGGAAATTGCAATTAGTGGATTGTAATAAAACAAATACAACTTGTGAAGAAATTGAAGAGATAGACTCAACTAGAAGCCTTGACATTGTGATTCAACACTTTCTTTTTGACAATAAGGTAGAGTTTCCAAACTTGAAGAAGCTATCCATTGATGACCTAGCAAAGTTGACGACAATATGGAACAATCAACTTTCTCTAGAGATTTCAAAAAATCTAGAGACAATAGAAATTGTTTCGTGTGACAGTTTGAAAAGTATTTTCCCTGTTTCAGTGGCTAGAAATCTTCGACAGTTAACAAGGCTGATAGTGAGGAACTGTGGAGTGGAGGAAATCATTGCAAGAGAGGAGGGACAACAAACAACACCTAAGTTTGTGTTTCCAAAAGTAACAAAAGTGATTTTTGGGAATATGTCCCAACTCAAGAATTTCTACCCAGGGATGCATGTGTCCATCTGGCCATCACTTAATGAGTTAAGGGTGGTTCAATGTGCTAAAGTCAAAGTATTTGCCGAGGAAATCTCAAATTTTCAAGGACATAATGAGTCGGAACGTCTCAGTGTTCTTATCCCGCAGTCTCTCTTTTTAATTGAGAAGGATTCATTTCCCAAATTGGAATGTTTGAGCGTGAATGCAATGGAGTTTTCGAATGGTCCATTCCCAGCAGCAGCGCAGTTGTTTAGCAAACTAAAGCTTCTGGATGTTTGTTGTCCAGAGTCCATATCAGCTGTTTTCCTTGAAAAATTACTCGACCCAGAAGGAAACAGTGCAGTTGGGATTGGGACCCAGCAGCTCCCACATTTAAAAGAGTTGTGGCTTGTTCGAATGGAGAAGCTGATGCATCTAGGCCAGGATGATGAGGAGGATAACTCACAATCAGCCCCCCGCATCCCAAATTTTCCAAACCTGCAAATTCTATTCGTGAATTGTTGCCACAGCTTAAGGAATCTGAGATCATCCGCAATATCCTTCAACAATCTAACAAGTTTGGAAGTAAGTGTTTGCTACGGATTGAAATACTTGATGACTTACTCCATGGCCAAAAGTTTAATGCAACTCACAAAACTGGAAGTCGAGGGATGCCTAAGACTAGTGGAAATAGTGGGAGGCAATGAAGATGACGATTCAAGAAATGAGATTACATTCAGGCGGCTGAAACATTTGAAACTATTGGGTCTACCAAGACTGCAAGGCTTTTGCTCCGGAAATTGCATCGCTAAATTCCCGTCCTTGGAGACTTCAAGCATGAGCAACCGCCTCAAGTTGAAGATTTTCACAGCTCATGACCAAACGCTAACCAACGAAGAGGAAGACACAGATGTCGATGCTAGTGAGAAGTGGCTGACTGCTGATGATAAACGGAATTTGGCAAGTACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1345

Amino Acids

152.33

Weight (kDa)

5.66

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 162 - 321 3.7e-31 NB-ARC domain
AAA_22 PF13401 178 - 264 2.7e-06 AAA domain
LRR_14 PF23598 513 - 690 5.8e-09 Leucine-rich repeat region
LRR_RPS2 PF23247 796 - 896 1.5e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 903 - 993 1.3e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1080 - 1203 4.8e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1206 - 1298 1.8e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 3974
Acc36I ACCTGC 2 cut(s) 2482, 3570
AccB1I GGYRCC 1 cut(s) 1229
AccB7I CCANNNNNTGG 1 cut(s) 2657
AccI GTMKAC 3 cut(s) 1299, 2556, 3832
AccIII TCCGGA 1 cut(s) 3857
AciI CCGC 6 cut(s) 2414, 3227, 3541, 3615, 3805, 3910
AclI AACGTT 2 cut(s) 1727, 2485
AclWI GGATC 2 cut(s) 482, 1746
AcoI YGGCCR 4 cut(s) 1490, 2460, 3113, 3693
AcuI CTGAAG 5 cut(s) 248, 1581, 2262, 2325, 2342
AcyI GRCGYC 1 cut(s) 1105
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 9 cut(s) 25, 53, 633, 895, 1075, 1355, 2252, 2577, 4030
AfiI CCNNNNNNNGG 2 cut(s) 2657, 3886
AflII CTTAAG 1 cut(s) 3595
AflIII ACRYGT 2 cut(s) 1450, 1850
AhdI GACNNNNNGTC 1 cut(s) 811
AhlI ACTAGT 1 cut(s) 3745
AjiI CACGTC 2 cut(s) 1453, 1853
AjnI CCWGG 5 cut(s) 470, 1468, 1611, 3091, 3504
Alw21I GWGCWC 5 cut(s) 736, 1063, 1194, 1520, 1938
Alw26I GTCTC 6 cut(s) 299, 710, 2870, 3215, 3237, 3884
Alw44I GTGCAC 1 cut(s) 1516
AlwI GGATC 2 cut(s) 482, 1746
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 1550
Aor13HI TCCGGA 1 cut(s) 3857
AoxI GGCC 5 cut(s) 1490, 2460, 3113, 3502, 3693
ApaLI GTGCAC 1 cut(s) 1516
ApeKI GCWGC 6 cut(s) 435, 1690, 1878, 3320, 3323, 3445
Asp700I GAANNNNTTC 4 cut(s) 666, 1435, 1719, 3926
AspLEI GCGC 2 cut(s) 168, 3328
AspS9I GGNCC 4 cut(s) 700, 2596, 3308, 3438
AsuHPI GGTGA 5 cut(s) 977, 1458, 1893, 2027, 2428
AsuII TTCGAA 2 cut(s) 3302, 3478
AvaI CYCGRG 1 cut(s) 1550
AvaII GGWCC 4 cut(s) 700, 2596, 3308, 3438
BaeGI GKGCMC 1 cut(s) 1520
BalI TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
BanI GGYRCC 1 cut(s) 1229
BanII GRGCYC 2 cut(s) 1063, 1194
BbsI GAAGAC 3 cut(s) 1712, 2250, 3972
Bbv12I GWGCWC 5 cut(s) 736, 1063, 1194, 1520, 1938
BbvI GCAGC 6 cut(s) 447, 1677, 1865, 3332, 3335, 3457
BccI CCATC 7 cut(s) 711, 1115, 2174, 2257, 2659, 3116, 3124
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 1314, 1348
BciT130I CCWGG 5 cut(s) 472, 1470, 1613, 3093, 3506
BciVI GTATCC 1 cut(s) 2403
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 6 cut(s) 299, 710, 2870, 3215, 3237, 3884
BcuI ACTAGT 1 cut(s) 3745
BfrI CTTAAG 1 cut(s) 3595
BfuAI ACCTGC 2 cut(s) 2482, 3570
BfuI GTATCC 1 cut(s) 2403
BglII AGATCT 1 cut(s) 2581
BisI GCNGC 7 cut(s) 436, 1691, 1879, 3321, 3324, 3446, 3806
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 7 cut(s) 437, 1692, 1880, 3322, 3325, 3447, 3807
BmcAI AGTACT 2 cut(s) 1355, 4030
Bme1390I CCNGG 5 cut(s) 472, 1470, 1613, 3093, 3506
Bme18I GGWCC 4 cut(s) 700, 2596, 3308, 3438
BmeRI GACNNNNNGTC 1 cut(s) 811
BmeT110I CYCGRG 1 cut(s) 1550
BmgBI CACGTC 2 cut(s) 1453, 1853
BmgT120I GGNCC 4 cut(s) 700, 2596, 3308, 3438
BmiI GGNNCC 3 cut(s) 1231, 3439, 3440
BmrFI CCNGG 5 cut(s) 472, 1470, 1613, 3093, 3506
BmrI ACTGGG 2 cut(s) 59, 258
BmuI ACTGGG 2 cut(s) 59, 258
BpiI GAAGAC 3 cut(s) 1712, 2250, 3972
BplI GAGNNNNNCTC 6 cut(s) 2708, 2740, 3161, 3193, 3509, 3541
BpmI CTGGAG 3 cut(s) 1995, 2168, 2606
Bpu1102I GCTNAGC 1 cut(s) 335
Bpu14I TTCGAA 2 cut(s) 3302, 3478
BpuEI CTTGAG 6 cut(s) 1178, 1334, 1960, 2608, 3062, 3899
BsaHI GRCGYC 1 cut(s) 1105
BsaJI CCNNGG 7 cut(s) 298, 2212, 3091, 3092, 3168, 3690, 3885
BsaWI WCCGGW 1 cut(s) 3857
BsaXI ACNNNNNCTCC 6 cut(s) 1181, 1209, 1211, 1239, 2166, 2196
Bsc4I CCNNNNNNNGG 2 cut(s) 2657, 3886
Bse3DI GCAATG 5 cut(s) 1577, 1685, 2991, 3297, 3772
BseAI TCCGGA 1 cut(s) 3857
BseBI CCWGG 5 cut(s) 472, 1470, 1613, 3093, 3506
BseDI CCNNGG 7 cut(s) 298, 2212, 3091, 3092, 3168, 3690, 3885
BseLI CCNNNNNNNGG 2 cut(s) 2657, 3886
BseMI GCAATG 5 cut(s) 1577, 1685, 2991, 3297, 3772
BseMII CTCAG 8 cut(s) 39, 492, 675, 1114, 1666, 1810, 3226, 3596
BseRI GAGGAG 4 cut(s) 1202, 1992, 3017, 3530
BseSI GKGCMC 1 cut(s) 1520
BseXI GCAGC 6 cut(s) 447, 1677, 1865, 3332, 3335, 3457
BseYI CCCAGC 2 cut(s) 3316, 3441
BsgI GTGCAG 2 cut(s) 454, 3444
BshFI GGCC 5 cut(s) 1492, 2462, 3115, 3504, 3695
BshNI GGYRCC 1 cut(s) 1229
BsiHKAI GWGCWC 5 cut(s) 736, 1063, 1194, 1520, 1938
BsiHKCI CYCGRG 1 cut(s) 1550
BsiSI CCGG 1 cut(s) 3858
BslFI GGGAC 3 cut(s) 3021, 3055, 3451
BslI CCNNNNNNNGG 2 cut(s) 2657, 3886
BsmAI GTCTC 6 cut(s) 299, 710, 2870, 3215, 3237, 3884
BsmBI CGTCTC 1 cut(s) 3215
BsmFI GGGAC 3 cut(s) 3021, 3055, 3451
BsmI GAATGC 2 cut(s) 1404, 3292
BsnI GGCC 5 cut(s) 1492, 2462, 3115, 3504, 3695
BsoBI CYCGRG 1 cut(s) 1550
Bsp119I TTCGAA 2 cut(s) 3302, 3478
Bsp1286I GDGCHC 5 cut(s) 736, 1063, 1194, 1520, 1938
Bsp13I TCCGGA 1 cut(s) 3857
Bsp1407I TGTACA 1 cut(s) 2575
Bsp143I GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
Bsp1720I GCTNAGC 1 cut(s) 335
Bsp19I CCATGG 2 cut(s) 298, 3690
BspACI CCGC 6 cut(s) 2414, 3227, 3541, 3615, 3805, 3910
BspANI GGCC 5 cut(s) 1492, 2462, 3115, 3504, 3695
BspCNI CTCAG 8 cut(s) 40, 491, 676, 1113, 1665, 1809, 3225, 3597
BspEI TCCGGA 1 cut(s) 3857
BspHI TCATGA 1 cut(s) 3937
BspLI GGNNCC 3 cut(s) 1231, 3439, 3440
BspMI ACCTGC 2 cut(s) 2482, 3570
BspPI GGATC 2 cut(s) 482, 1746
BspQI GCTCTTC 1 cut(s) 724
BspT104I TTCGAA 2 cut(s) 3302, 3478
BspT107I GGYRCC 1 cut(s) 1229
BspTI CTTAAG 1 cut(s) 3595
BsrDI GCAATG 5 cut(s) 1577, 1685, 2991, 3297, 3772
BsrGI TGTACA 1 cut(s) 2575
BssECI CCNNGG 7 cut(s) 298, 2212, 3091, 3092, 3168, 3690, 3885
BssMI GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
BssNI GRCGYC 1 cut(s) 1105
BssT1I CCWWGG 4 cut(s) 298, 2212, 3690, 3885
Bst2UI CCWGG 5 cut(s) 472, 1470, 1613, 3093, 3506
Bst4CI ACNGT 8 cut(s) 58, 1051, 1306, 1590, 2903, 2949, 2975, 3422
Bst6I CTCTTC 7 cut(s) 184, 724, 865, 1707, 2511, 2709, 3954
BstACI GRCGYC 1 cut(s) 1105
BstAFI CTTAAG 1 cut(s) 3595
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstAUI TGTACA 1 cut(s) 2575
BstBI TTCGAA 2 cut(s) 3302, 3478
BstC8I GCNNGC 3 cut(s) 73, 736, 2197
BstDSI CCRYGG 2 cut(s) 298, 3690
BstEII GGTNACC 1 cut(s) 83
BstHHI GCGC 2 cut(s) 168, 3328
BstKTI GATC 7 cut(s) 178, 477, 1408, 1527, 1741, 2584, 3611
BstMAI GTCTC 6 cut(s) 299, 710, 2870, 3215, 3237, 3884
BstMBI GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
BstMWI GCNNNNNNNGC 7 cut(s) 68, 731, 744, 1151, 1322, 1774, 2171
BstNI CCWGG 5 cut(s) 472, 1470, 1613, 3093, 3506
BstNSI RCATGY 2 cut(s) 2336, 3104
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 5 cut(s) 470, 1468, 1611, 3091, 3504
BstSLI GKGCMC 1 cut(s) 1520
BstV1I GCAGC 6 cut(s) 447, 1677, 1865, 3332, 3335, 3457
BstV2I GAAGAC 3 cut(s) 1712, 2250, 3972
BstX2I RGATCY 2 cut(s) 474, 2581
BstYI RGATCY 2 cut(s) 474, 2581
BsuI GTATCC 1 cut(s) 2403
BsuRI GGCC 5 cut(s) 1492, 2462, 3115, 3504, 3695
BtgI CCRYGG 2 cut(s) 298, 3690
BtgZI GCGATG 1 cut(s) 3853
BtrI CACGTC 2 cut(s) 1453, 1853
BtsI GCAGTG 1 cut(s) 2190
BtsIMutI CAGTG 6 cut(s) 1586, 2094, 2190, 2934, 3220, 3427
BveI ACCTGC 2 cut(s) 2482, 3570
Cac8I GCNNGC 3 cut(s) 73, 736, 2197
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 3937
CfoI GCGC 2 cut(s) 168, 3328
Cfr13I GGNCC 4 cut(s) 700, 2596, 3308, 3438
CseI GACGC 1 cut(s) 1113
Csp6I GTAC 9 cut(s) 24, 52, 632, 894, 1074, 1354, 2251, 2576, 4029
CspCI CAANNNNNGTGG 2 cut(s) 1003, 1038
CviQI GTAC 9 cut(s) 24, 52, 632, 894, 1074, 1354, 2251, 2576, 4029
DpnI GATC 7 cut(s) 177, 476, 1407, 1526, 1740, 2583, 3610
DpnII GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
DraI TTTAAA 3 cut(s) 318, 2436, 3459
DraIII CACNNNGTG 1 cut(s) 866
DrdI GACNNNNNNGTC 1 cut(s) 3974
DriI GACNNNNNGTC 1 cut(s) 811
DseDI GACNNNNNNGTC 1 cut(s) 3974
EaeI YGGCCR 4 cut(s) 1490, 2460, 3113, 3693
Eam1104I CTCTTC 7 cut(s) 184, 724, 865, 1707, 2511, 2709, 3954
Eam1105I GACNNNNNGTC 1 cut(s) 811
EarI CTCTTC 7 cut(s) 184, 724, 865, 1707, 2511, 2709, 3954
Ecl136II GAGCTC 2 cut(s) 1061, 1192
Eco130I CCWWGG 4 cut(s) 298, 2212, 3690, 3885
Eco24I GRGCYC 2 cut(s) 1063, 1194
Eco32I GATATC 3 cut(s) 265, 454, 1546
Eco47I GGWCC 4 cut(s) 700, 2596, 3308, 3438
Eco53kI GAGCTC 2 cut(s) 1061, 1192
Eco57I CTGAAG 5 cut(s) 248, 1581, 2262, 2325, 2342
Eco88I CYCGRG 1 cut(s) 1550
Eco91I GGTNACC 1 cut(s) 83
EcoICRI GAGCTC 2 cut(s) 1061, 1192
EcoO109I RGGNCCY 2 cut(s) 2596, 3438
EcoO65I GGTNACC 1 cut(s) 83
EcoRII CCWGG 5 cut(s) 470, 1468, 1611, 3091, 3504
EcoRV GATATC 3 cut(s) 265, 454, 1546
EcoT14I CCWWGG 4 cut(s) 298, 2212, 3690, 3885
EcoT22I ATGCAT 4 cut(s) 1327, 1404, 3102, 3498
EcoT38I GRGCYC 2 cut(s) 1063, 1194
ErhI CCWWGG 4 cut(s) 298, 2212, 3690, 3885
Esp3I CGTCTC 1 cut(s) 3215
FaqI GGGAC 3 cut(s) 3021, 3055, 3451
FauI CCCGC 2 cut(s) 3234, 3548
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 3 cut(s) 1299, 2556, 3832
Fnu4HI GCNGC 7 cut(s) 436, 1691, 1879, 3321, 3324, 3446, 3806
FriOI GRGCYC 2 cut(s) 1063, 1194
Fsp4HI GCNGC 7 cut(s) 436, 1691, 1879, 3321, 3324, 3446, 3806
GlaI GCGC 2 cut(s) 167, 3327
GluI GCNGC 7 cut(s) 436, 1691, 1879, 3321, 3324, 3446, 3806
GsaI CCCAGC 2 cut(s) 3320, 3445
GsuI CTGGAG 3 cut(s) 1995, 2168, 2606
HaeIII GGCC 5 cut(s) 1492, 2462, 3115, 3504, 3695
HapII CCGG 1 cut(s) 3858
HgaI GACGC 1 cut(s) 1113
HhaI GCGC 2 cut(s) 168, 3328
Hin1I GRCGYC 1 cut(s) 1105
Hin6I GCGC 2 cut(s) 166, 3326
HinP1I GCGC 2 cut(s) 166, 3326
HincII GTYRAC 5 cut(s) 348, 418, 1300, 2826, 2952
HindII GTYRAC 5 cut(s) 348, 418, 1300, 2826, 2952
HindIII AAGCTT 3 cut(s) 207, 1918, 3347
HpaI GTTAAC 2 cut(s) 418, 2952
HpaII CCGG 1 cut(s) 3858
HphI GGTGA 5 cut(s) 977, 1458, 1893, 2027, 2428
Hpy188I TCNGA 8 cut(s) 886, 1103, 1255, 1772, 2322, 2542, 3205, 3606
HpyCH4III ACNGT 8 cut(s) 58, 1051, 1306, 1590, 2903, 2949, 2975, 3422
HpyCH4IV ACGT 6 cut(s) 918, 1452, 1727, 1852, 2485, 3208
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 731, 744, 1151, 1322, 1774, 2171
HpySE526I ACGT 6 cut(s) 918, 1452, 1727, 1852, 2485, 3208
Hsp92I GRCGYC 1 cut(s) 1105
HspAI GCGC 2 cut(s) 166, 3326
KflI GGGWCCC 1 cut(s) 3438
Kpn2I TCCGGA 1 cut(s) 3857
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 2 cut(s) 418, 2952
Kzo9I GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 6 cut(s) 163, 327, 1189, 2187, 3453, 3860
Lsp1109I GCAGC 6 cut(s) 447, 1677, 1865, 3332, 3335, 3457
MaeII ACGT 6 cut(s) 918, 1452, 1727, 1852, 2485, 3208
MaeIII GTNAC 7 cut(s) 83, 214, 592, 1045, 1759, 2897, 3043
MalI GATC 7 cut(s) 177, 476, 1407, 1526, 1740, 2583, 3610
MboI GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
MfeI CAATTG 2 cut(s) 18, 128
MflI RGATCY 2 cut(s) 474, 2581
MhlI GDGCHC 5 cut(s) 736, 1063, 1194, 1520, 1938
MlsI TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
MluNI TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
MlyI GAGTC 6 cut(s) 133, 821, 1989, 2717, 3209, 3380
MmeI TCCRAC 5 cut(s) 16, 1260, 1641, 1845, 3183
Mox20I TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
Mph1103I ATGCAT 4 cut(s) 1327, 1404, 3102, 3498
MroI TCCGGA 1 cut(s) 3857
MroXI GAANNNNTTC 4 cut(s) 666, 1435, 1719, 3926
MscI TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
MslI CAYNNNNRTG 1 cut(s) 2331
Msp20I TGGCCA 4 cut(s) 1492, 2462, 3115, 3695
MspA1I CMGCKG 1 cut(s) 3383
MspCI CTTAAG 1 cut(s) 3595
MspI CCGG 1 cut(s) 3858
MspR9I CCNGG 5 cut(s) 472, 1470, 1613, 3093, 3506
MunI CAATTG 2 cut(s) 18, 128
Mva1269I GAATGC 2 cut(s) 1404, 3292
MvaI CCWGG 5 cut(s) 472, 1470, 1613, 3093, 3506
MwoI GCNNNNNNNGC 7 cut(s) 68, 731, 744, 1151, 1322, 1774, 2171
NcoI CCATGG 2 cut(s) 298, 3690
NdeII GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
NlaIV GGNNCC 3 cut(s) 1231, 3439, 3440
NmeAIII GCCGAG 1 cut(s) 3193
NmuCI GTSAC 1 cut(s) 2897
NsiI ATGCAT 4 cut(s) 1327, 1404, 3102, 3498
NspI RCATGY 2 cut(s) 2336, 3104
NspV TTCGAA 2 cut(s) 3302, 3478
PagI TCATGA 1 cut(s) 3937
PasI CCCWGGG 1 cut(s) 3092
PciSI GCTCTTC 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 924
PctI GAATGC 2 cut(s) 1404, 3292
PdmI GAANNNNTTC 4 cut(s) 666, 1435, 1719, 3926
PfeI GAWTC 9 cut(s) 467, 649, 1674, 2115, 2537, 2749, 3254, 3601, 3779
PflMI CCANNNNNTGG 1 cut(s) 2657
PfoI TCCNGGA 2 cut(s) 470, 1611
PkrI GCNGC 7 cut(s) 437, 1692, 1880, 3322, 3325, 3447, 3807
PleI GAGTC 6 cut(s) 132, 820, 1988, 2717, 3208, 3379
PpsI GAGTC 6 cut(s) 132, 820, 1988, 2717, 3208, 3379
PpuMI RGGWCCY 2 cut(s) 2596, 3438
Psp124BI GAGCTC 2 cut(s) 1063, 1194
Psp1406I AACGTT 2 cut(s) 1727, 2485
Psp5II RGGWCCY 2 cut(s) 2596, 3438
Psp6I CCWGG 5 cut(s) 470, 1468, 1611, 3091, 3504
PspEI GGTNACC 1 cut(s) 83
PspFI CCCAGC 2 cut(s) 3316, 3441
PspGI CCWGG 5 cut(s) 470, 1468, 1611, 3091, 3504
PspN4I GGNNCC 3 cut(s) 1231, 3439, 3440
PspPI GGNCC 4 cut(s) 700, 2596, 3308, 3438
PspPPI RGGWCCY 2 cut(s) 2596, 3438
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 2 cut(s) 474, 2581
PvuII CAGCTG 1 cut(s) 3383
RsaI GTAC 9 cut(s) 25, 53, 633, 895, 1075, 1355, 2252, 2577, 4030
RsaNI GTAC 9 cut(s) 24, 52, 632, 894, 1074, 1354, 2251, 2576, 4029
RseI CAYNNNNRTG 1 cut(s) 2331
SacI GAGCTC 2 cut(s) 1063, 1194
SalI GTCGAC 1 cut(s) 1298
SapI GCTCTTC 1 cut(s) 724
SatI GCNGC 7 cut(s) 436, 1691, 1879, 3321, 3324, 3446, 3806
Sau3AI GATC 7 cut(s) 175, 474, 1405, 1524, 1738, 2581, 3608
Sau96I GGNCC 4 cut(s) 700, 2596, 3308, 3438
ScaI AGTACT 2 cut(s) 1355, 4030
SchI GAGTC 6 cut(s) 133, 821, 1989, 2717, 3209, 3380
ScrFI CCNGG 5 cut(s) 472, 1470, 1613, 3093, 3506
SduI GDGCHC 5 cut(s) 736, 1063, 1194, 1520, 1938
SfuI TTCGAA 2 cut(s) 3302, 3478
SinI GGWCC 4 cut(s) 700, 2596, 3308, 3438
SmiMI CAYNNNNRTG 1 cut(s) 2331
SmlI CTYRAG 7 cut(s) 1193, 1349, 1939, 2623, 3077, 3595, 3914
SmoI CTYRAG 7 cut(s) 1193, 1349, 1939, 2623, 3077, 3595, 3914
SpeI ACTAGT 1 cut(s) 3745
SsiI CCGC 6 cut(s) 2414, 3227, 3541, 3615, 3805, 3910
SstI GAGCTC 2 cut(s) 1063, 1194
StyD4I CCNGG 5 cut(s) 470, 1468, 1611, 3091, 3504
StyI CCWWGG 4 cut(s) 298, 2212, 3690, 3885
TaaI ACNGT 8 cut(s) 58, 1051, 1306, 1590, 2903, 2949, 2975, 3422
TaiI ACGT 6 cut(s) 921, 1455, 1730, 1855, 2488, 3211
TatI WGTACW 5 cut(s) 51, 1353, 2250, 2575, 4028
TauI GCSGC 1 cut(s) 3808
TfiI GAWTC 9 cut(s) 467, 649, 1674, 2115, 2537, 2749, 3254, 3601, 3779
TscAI CASTG 6 cut(s) 1593, 2101, 2197, 2934, 3220, 3427
TseFI GTSAC 1 cut(s) 2897
TseI GCWGC 6 cut(s) 435, 1690, 1878, 3320, 3323, 3445
Tsp45I GTSAC 1 cut(s) 2897
TspGWI ACGGA 4 cut(s) 314, 877, 3678, 4030
TspRI CASTG 6 cut(s) 1593, 2101, 2197, 2934, 3220, 3427
Van91I CCANNNNNTGG 1 cut(s) 2657
Vha464I CTTAAG 1 cut(s) 3595
VneI GTGCAC 1 cut(s) 1516
VpaK11BI GGWCC 4 cut(s) 700, 2596, 3308, 3438
XbaI TCTAGA 3 cut(s) 1439, 2854, 2872
XceI RCATGY 2 cut(s) 2336, 3104
XcmI CCANNNNNNNNNTGG 1 cut(s) 2126
XmiI GTMKAC 3 cut(s) 1299, 2556, 3832
XmnI GAANNNNTTC 4 cut(s) 666, 1435, 1719, 3926
ZrmI AGTACT 2 cut(s) 1355, 4030
Zsp2I ATGCAT 4 cut(s) 1327, 1404, 3102, 3498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.