Rmu_sc0001959.1_g000025

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001959.1
OG0000042
Physical Location & Seq
Reverse (-)
101942 .. 108839
6898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001959.1_g000025.1.cds

Sequence Viewer

Length: 4152 bp
atggactgtcttgttgcaattggtactggaattgttggaaagattgctgagttcacagttgcaccaattatacgccaagtgggttatgtaatccactacaacaagaaccttaaaaaactagagagtcaagtagatgatttgggtgcggccagagaaagcgtgaagcatgctgttgaaacagagaaaagtaaaggtagagaaattgaagtatgtgtccagaattggctgactaaagtggataagatgtctgaaagagcaaacgatttcttgaaagatgaacagcatgcagagactagatgtctccgtggcttttgtcctaatctaaaggttcgccatcatcgcagcaggaaatcaacaaaattggttcaagaagttgctgagctctgtgggaaaagggttgttggcgatattgcatatgatgtcaaaccagaagaggtgtggagcatacctgctaaagattaccaggcctttgattcaaggactttagttgcagagaaaatcatgaatgaactgagacgatctgagatcgacatgattggggtgtacggtattgggggcgtggggaagacaacacttgctaaggaagtttatcggcaagctaaacaagataaaacgttatttgatgatgttgttatagtactagatgtaaaaaagagtccagatttggaaggaattcaaaaaagaattgctgaaaagttgggaatggaatttctcggagatgagactacagacagaagagctagtcgtctttttcataggataaaagacaagaaagttttggtaattttggatgacatacaagaaaaagttgatttggagattctgggactttcacgaacgtccaattgtaaggtattgttgacatctagaaccagagaagtattatcggttgagatgcgtacacaaaaggagtttccacttgaccttttagatgcagaagaaaactggattttatttgagaagatggcaggtgattttgttcaaaagtctgacatacgagaagtagcaacagaagtggccaaaaagtgtggaggcttgccggttttagtggtaacagttgcaagcgccctgaagaatagaagtacagtacaagcttggaaagatgccttgcgacgcttaaacaaatttgagaaagaagaattcacggaaaaagcatacttggctctggagtggagttacgagcaattggatgatgaggaacttaagccattgttcttgctatttggaattatgagggattactccatgaatcttcttgacttgctgaaatacagtatgggcttaggtttgattaaaaacgtggatacaatggaagaagcacagaatgcactgcattcactggtggaaaaacttatagactcttgtctattgctaaaggatggtgataataataaatattttagaatgcatgatcttgttcatgaagttgtaaaccggattgcctcgcgagagcaacatgtcttcaaagttcttattggagatgagttcaaagaatggccagctaaggatttttgtaaaaagagcactatgatcattcttgatagctgcagtatcccctatcttcctaatggtttggaatacccagaactgaaaatgtttaccttctctagtagcaattttgatcactgcttggaaattcccagcaacttttttgaagggatgaagaaactcaaagtgttggacttcactaatttgagtatctcaatgctacctccatctctccagttcctaaaaagtcttcagacattgtgtttggatgcctgcaccttgggagacctagctttagttggagagctacaaaacttggaaatgcttagctttttaaaatccaagtttaaaaagttacccgaagaaatagggcaattgacacgtctacgattgttggatttgaatggttgctctcaactcgaagtgatttcacctaatgttatatcaaacttgaaaaggttagaaaacttgagaatgggtgatagcttcaaccgatgggagggtgaaggagtcattagtagtgaaagaagaaatgcaaaccttgaagagctaaagcacttgcctcaactaactgctttacaaatacatatcccagatgttaatatccttccagcagatttgttcatcactagtactttagagagattccaaatatgtattggttctgtgtggaaatgggataatgtggatgaagtcctcaatgcactaaagctccaactcactgctagcaatgaattggaccaaggtctaagaaagttgctaaataaaactgaagacttgtacttagaggggacggagggtgttaatagtagtataatctatcacttaggtgctggaggttttcagaaattgaagcatctccatgtccaaacgaatgctgagtttacgtatatcataaatgggaaggttaggtatcccaatttaacatggttggcggtgaatgaactcaatggtttaacattcttgttatcatcttcaatggctagaagccttgcacaactcaaacgtcttcaggtatcaggatgtcaaataatggaagagatagtatcaatagaagaatctgatgaagaaattgtaaacaacttcttttgccagctacaaattctggagctaaaagaccttccaaatctcactaaattttgctcaagaaaccatactgaactttcaaatccatcatttgggatacaacactttctttttgacaataaggtagattttccaaacttgaagaagttatccattgatggcctagcaaagttaatgacaatatggaacaatcaattttctctagagagttcaaaaaatctagagacaatagaaattgtttcatgtgacagtttgaaaagtatattttcactagaatcagttgcaactcagctaagatcttgtgactgtcaaaatctagaatcagttgaaattgattcttgtgagaatttgaaaaacattttccctgttacagtggctagaaatcttcgacaattaacaaggctgatagtgaggaactgtggagtggaggaaatcattgcaagagaggagggactacaaacaacacctaagtttgtgtttccaaaagtaacaaaagtgatttttttgaatatgtcccaactcacgaatttctacccagggatgcatgtgtccgtctggccatcacttaatgagttgagggtggtacaatgtgctaaagtcaaagtgtttgtcgaggaaatctcaaattttcaaggatataatgggtgggaacgtctcagtgttcttatcccgcagtctctctttttaattgagaaggattcatttcccaaattggaatgtttgagcgtgaatacaatggagttttcgaatggtccactcccagcagcagcgcagttgtttagcaaactaaagtttcttggtgtttgttgtccagagtccatatcagctattttccttgacaaattactcgacccagaagtaaacagtgcggttgggattgggacccaacaacaacagcagctcctacatttaaaagagttggggcttattggaatggagaagctgatgcatctaggcctggaggatgaggaggataactcacaatcagccccccgcatcccaaattttccaaacctggaaattctaggcttgtatgcttgtcactgcttaaggaatctaagatcatccgtaatatccttcaacaatctaacaactttgcgagtaaatgcttgcaatggattgaaatacttgataacttaccccatggccaagagtttgatgcaactcacaaaattggaagtcgaggggtgcccaagactggtggaaatagttgcaagcaatgaagatgccgatacaagaaatgagattacattcaggcggctgaaacatttgaaacttaatcagctaccaagactgcaagggttttgctccggaaattgcattgctaaattcccatccttggaaacttcgaccatgagcaaccgcctcaagttgaagattttcacagctcatgaccaaatgctacagctaacaaacgaaggggaagacacagatgtcgatagttggggttttatgttatcaaaagagggaagctccagtacagtagggggcaggtgtatagaagaagtatatgatgctttggctgaacgccttgttcctacagcagcaacaatgtcaaatccatatttgaagaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1383

Amino Acids

156.8

Weight (kDa)

5.78

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 959, 4056
AasI GACNNNNNNGTC 1 cut(s) 4007
Acc36I ACCTGC 3 cut(s) 457, 959, 4056
AccB1I GGYRCC 1 cut(s) 3762
AccB7I CCANNNNNTGG 1 cut(s) 2666
AccI GTMKAC 1 cut(s) 1873
AccII CGCG 1 cut(s) 1447
AccIII TCCGGA 1 cut(s) 3884
AciI CCGC 7 cut(s) 146, 2423, 3245, 3443, 3568, 3832, 3937
AclI AACGTT 1 cut(s) 614
AcoI YGGCCR 5 cut(s) 147, 1017, 1496, 3131, 3720
AcuI CTGAAG 4 cut(s) 1091, 1724, 2280, 2483
AfiI CCNNNNNNNGG 4 cut(s) 1987, 2666, 3772, 3913
AflII CTTAAG 2 cut(s) 1202, 3622
AflIII ACRYGT 2 cut(s) 1456, 1868
AhdI GACNNNNNGTC 1 cut(s) 297
AhlI ACTAGT 1 cut(s) 2117
AjiI CACGTC 1 cut(s) 1871
AjnI CCWGG 4 cut(s) 462, 3109, 3531, 3588
AleI CACNNNNGTG 1 cut(s) 2316
Alw21I GWGCWC 2 cut(s) 384, 1526
Alw26I GTCTC 8 cut(s) 284, 305, 508, 716, 1767, 2792, 3233, 3255
Aor13HI TCCGGA 1 cut(s) 3884
AoxI GGCC 8 cut(s) 147, 465, 1017, 1496, 2734, 3131, 3529, 3720
ApeKI GCWGC 6 cut(s) 342, 1545, 3338, 3341, 3472, 4118
ArsI GACNNNNNNTTYG 4 cut(s) 1735, 1767, 3168, 3200
Asp700I GAANNNNTTC 2 cut(s) 672, 3953
AspLEI GCGC 2 cut(s) 1067, 3346
AspS9I GGNCC 3 cut(s) 2227, 3326, 3456
AsuHPI GGTGA 6 cut(s) 983, 1394, 1911, 1979, 2003, 2437
AsuII TTCGAA 1 cut(s) 3320
AsuNHI GCTAGC 1 cut(s) 2213
AvaII GGWCC 3 cut(s) 2227, 3326, 3456
BaeGI GKGCMC 1 cut(s) 3767
BalI TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
BanI GGYRCC 1 cut(s) 3762
BanII GRGCYC 1 cut(s) 384
BarI GAAGNNNNNNTAC 2 cut(s) 4036, 4068
BbsI GAAGAC 6 cut(s) 572, 1453, 1730, 2268, 2489, 4005
Bbv12I GWGCWC 2 cut(s) 384, 1526
BbvI GCAGC 6 cut(s) 354, 1532, 3350, 3353, 3484, 4130
BccI CCATC 9 cut(s) 342, 958, 1373, 1723, 1977, 2668, 2726, 3142, 3916
BciT130I CCWGG 4 cut(s) 464, 3111, 3533, 3590
BciVI GTATCC 4 cut(s) 1297, 1562, 2412, 2664
BclI TGATCA 2 cut(s) 1530, 1621
BcoDI GTCTC 8 cut(s) 284, 305, 508, 716, 1767, 2792, 3233, 3255
BcuI ACTAGT 1 cut(s) 2117
BfmI CTRYAG 4 cut(s) 726, 1546, 3977, 4113
BfoI RGCGCY 1 cut(s) 1068
BfrI CTTAAG 2 cut(s) 1202, 3622
BfuAI ACCTGC 3 cut(s) 457, 959, 4056
BfuI GTATCC 4 cut(s) 1297, 1562, 2412, 2664
BglII AGATCT 1 cut(s) 2870
BisI GCNGC 8 cut(s) 147, 343, 1546, 3339, 3342, 3473, 3833, 4119
BlpI GCTNAGC 2 cut(s) 378, 1814
BlsI GCNGC 8 cut(s) 148, 344, 1547, 3340, 3343, 3474, 3834, 4120
BmcAI AGTACT 2 cut(s) 639, 2122
Bme1390I CCNGG 4 cut(s) 464, 3111, 3533, 3590
Bme18I GGWCC 3 cut(s) 2227, 3326, 3456
BmeRI GACNNNNNGTC 1 cut(s) 297
BmgBI CACGTC 1 cut(s) 1871
BmgT120I GGNCC 3 cut(s) 2227, 3326, 3456
BmiI GGNNCC 3 cut(s) 3457, 3458, 3764
BmrFI CCNGG 4 cut(s) 464, 3111, 3533, 3590
BmtI GCTAGC 1 cut(s) 2217
BoxI GACNNNNGTC 2 cut(s) 1362, 2232
BpiI GAAGAC 6 cut(s) 572, 1453, 1730, 2268, 2489, 4005
BplI GAGNNNNNCTC 6 cut(s) 3179, 3211, 3536, 3568, 4031, 4063
BpmI CTGGAG 6 cut(s) 1187, 1706, 2343, 2615, 3554, 4033
Bpu10I CCTNAGC 3 cut(s) 579, 1282, 1503
Bpu1102I GCTNAGC 2 cut(s) 378, 1814
Bpu14I TTCGAA 1 cut(s) 3320
BpuEI CTTGAG 3 cut(s) 1978, 2617, 3926
BsaAI YACGTR 1 cut(s) 2376
BsaI GGTCTC 1 cut(s) 1767
BsaJI CCNNGG 7 cut(s) 304, 1767, 2230, 3109, 3110, 3717, 3912
BsaWI WCCGGW 2 cut(s) 1434, 3884
BsaXI ACNNNNNCTCC 4 cut(s) 2184, 2214, 3459, 3489
Bsc4I CCNNNNNNNGG 4 cut(s) 1987, 2666, 3772, 3913
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 6 cut(s) 31, 950, 1344, 1723, 3777, 4050
Bse3DI GCAATG 5 cut(s) 2224, 3009, 3694, 3799, 3894
BseAI TCCGGA 1 cut(s) 3884
BseBI CCWGG 4 cut(s) 464, 3111, 3533, 3590
BseDI CCNNGG 7 cut(s) 304, 1767, 2230, 3109, 3110, 3717, 3912
BseLI CCNNNNNNNGG 4 cut(s) 1987, 2666, 3772, 3913
BseMI GCAATG 5 cut(s) 2224, 3009, 3694, 3799, 3894
BseMII CTCAG 7 cut(s) 39, 369, 503, 513, 2358, 2876, 3244
BseNI ACTGG 6 cut(s) 31, 950, 1344, 1723, 3777, 4050
BseRI GAGGAG 2 cut(s) 3035, 3557
BseSI GKGCMC 1 cut(s) 3767
BseXI GCAGC 6 cut(s) 354, 1532, 3350, 3353, 3484, 4130
BseYI CCCAGC 2 cut(s) 1640, 3334
BsgI GTGCAG 1 cut(s) 1747
Bsh1236I CGCG 1 cut(s) 1447
BshFI GGCC 8 cut(s) 149, 467, 1019, 1498, 2736, 3133, 3531, 3722
BshNI GGYRCC 1 cut(s) 3762
BsiHKAI GWGCWC 2 cut(s) 384, 1526
BsiSI CCGG 3 cut(s) 1040, 1435, 3885
BslFI GGGAC 5 cut(s) 840, 2293, 3039, 3073, 3469
BslI CCNNNNNNNGG 4 cut(s) 1987, 2666, 3772, 3913
BsmAI GTCTC 8 cut(s) 284, 305, 508, 716, 1767, 2792, 3233, 3255
BsmBI CGTCTC 2 cut(s) 508, 3233
BsmFI GGGAC 5 cut(s) 840, 2293, 3039, 3073, 3469
BsmI GAATGC 4 cut(s) 1330, 1333, 1410, 2368
BsnI GGCC 8 cut(s) 149, 467, 1019, 1498, 2736, 3133, 3531, 3722
Bso31I GGTCTC 1 cut(s) 1767
Bsp119I TTCGAA 1 cut(s) 3320
Bsp1286I GDGCHC 3 cut(s) 384, 1526, 3767
Bsp13I TCCGGA 1 cut(s) 3884
Bsp143I GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
Bsp1720I GCTNAGC 2 cut(s) 378, 1814
Bsp19I CCATGG 1 cut(s) 3717
Bsp68I TCGCGA 1 cut(s) 1447
BspACI CCGC 7 cut(s) 146, 2423, 3245, 3443, 3568, 3832, 3937
BspANI GGCC 8 cut(s) 149, 467, 1019, 1498, 2736, 3133, 3531, 3722
BspCNI CTCAG 7 cut(s) 40, 370, 504, 514, 2359, 2875, 3243
BspEI TCCGGA 1 cut(s) 3884
BspFNI CGCG 1 cut(s) 1447
BspHI TCATGA 3 cut(s) 501, 1420, 3964
BspLI GGNNCC 3 cut(s) 3457, 3458, 3764
BspMAI CTGCAG 1 cut(s) 1550
BspMI ACCTGC 3 cut(s) 457, 959, 4056
BspOI GCTAGC 1 cut(s) 2217
BspQI GCTCTTC 2 cut(s) 730, 2028
BspT104I TTCGAA 1 cut(s) 3320
BspT107I GGYRCC 1 cut(s) 3762
BspTI CTTAAG 2 cut(s) 1202, 3622
BspTNI GGTCTC 1 cut(s) 1767
BsrDI GCAATG 5 cut(s) 2224, 3009, 3694, 3799, 3894
BsrFI RCCGGY 1 cut(s) 1039
BsrI ACTGG 6 cut(s) 31, 950, 1344, 1723, 3777, 4050
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 7 cut(s) 304, 1767, 2230, 3109, 3110, 3717, 3912
BssMI GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
BssT1I CCWWGG 4 cut(s) 1767, 2230, 3717, 3912
Bst2UI CCWGG 4 cut(s) 464, 3111, 3533, 3590
Bst6I CTCTTC 4 cut(s) 426, 730, 2028, 2520
BstAFI CTTAAG 2 cut(s) 1202, 3622
BstAPI GCANNNNNTGC 1 cut(s) 1325
BstBAI YACGTR 1 cut(s) 2376
BstBI TTCGAA 1 cut(s) 3320
BstDSI CCRYGG 2 cut(s) 304, 3717
BstFNI CGCG 1 cut(s) 1447
BstH2I RGCGCY 1 cut(s) 1068
BstHHI GCGC 2 cut(s) 1067, 3346
BstKTI GATC 7 cut(s) 521, 528, 1414, 1533, 1624, 2873, 3638
BstMAI GTCTC 8 cut(s) 284, 305, 508, 716, 1767, 2792, 3233, 3255
BstMBI GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
BstMWI GCNNNNNNNGC 3 cut(s) 339, 1160, 1325
BstNI CCWGG 4 cut(s) 464, 3111, 3533, 3590
BstNSI RCATGY 4 cut(s) 170, 287, 1460, 3122
BstPAI GACNNNNGTC 2 cut(s) 1362, 2232
BstSCI CCNGG 4 cut(s) 462, 3109, 3531, 3588
BstSFI CTRYAG 4 cut(s) 726, 1546, 3977, 4113
BstSLI GKGCMC 1 cut(s) 3767
BstSNI TACGTA 1 cut(s) 2376
BstUI CGCG 1 cut(s) 1447
BstV1I GCAGC 6 cut(s) 354, 1532, 3350, 3353, 3484, 4130
BstV2I GAAGAC 6 cut(s) 572, 1453, 1730, 2268, 2489, 4005
BstX2I RGATCY 1 cut(s) 2870
BstYI RGATCY 1 cut(s) 2870
BsuI GTATCC 4 cut(s) 1297, 1562, 2412, 2664
BsuRI GGCC 8 cut(s) 149, 467, 1019, 1498, 2736, 3133, 3531, 3722
BtgI CCRYGG 2 cut(s) 304, 3717
BtgZI GCGATG 1 cut(s) 323
BtrI CACGTC 1 cut(s) 1871
BtsI GCAGTG 4 cut(s) 1328, 1624, 2208, 3616
BtsIMutI CAGTG 8 cut(s) 1328, 1337, 1624, 2208, 2952, 3238, 3445, 3616
BtuMI TCGCGA 1 cut(s) 1447
BveI ACCTGC 3 cut(s) 457, 959, 4056
CciI TCATGA 3 cut(s) 501, 1420, 3964
CfoI GCGC 2 cut(s) 1067, 3346
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 3 cut(s) 2227, 3326, 3456
CseI GACGC 1 cut(s) 1122
CspCI CAANNNNNGTGG 6 cut(s) 996, 1009, 1031, 1044, 3756, 3791
DpnI GATC 7 cut(s) 520, 527, 1413, 1532, 1623, 2872, 3637
DpnII GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
DraI TTTAAA 3 cut(s) 1824, 1837, 3486
DrdI GACNNNNNNGTC 1 cut(s) 4007
DriI GACNNNNNGTC 1 cut(s) 297
DseDI GACNNNNNNGTC 1 cut(s) 4007
EaeI YGGCCR 5 cut(s) 147, 1017, 1496, 3131, 3720
Eam1104I CTCTTC 4 cut(s) 426, 730, 2028, 2520
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 4 cut(s) 426, 730, 2028, 2520
Ecl136II GAGCTC 1 cut(s) 382
Eco105I TACGTA 1 cut(s) 2376
Eco130I CCWWGG 4 cut(s) 1767, 2230, 3717, 3912
Eco147I AGGCCT 2 cut(s) 467, 3531
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 1767
Eco47I GGWCC 3 cut(s) 2227, 3326, 3456
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 4 cut(s) 1091, 1724, 2280, 2483
EcoICRI GAGCTC 1 cut(s) 382
EcoO109I RGGNCCY 1 cut(s) 3456
EcoRI GAATTC 2 cut(s) 672, 1139
EcoRII CCWGG 4 cut(s) 462, 3109, 3531, 3588
EcoT14I CCWWGG 4 cut(s) 1767, 2230, 3717, 3912
EcoT22I ATGCAT 3 cut(s) 1410, 3120, 3525
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 4 cut(s) 1767, 2230, 3717, 3912
Esp3I CGTCTC 2 cut(s) 508, 3233
FaqI GGGAC 5 cut(s) 840, 2293, 3039, 3073, 3469
FauI CCCGC 2 cut(s) 3252, 3575
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 2 cut(s) 1530, 1621
FblI GTMKAC 1 cut(s) 1873
Fnu4HI GCNGC 8 cut(s) 147, 343, 1546, 3339, 3342, 3473, 3833, 4119
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 8 cut(s) 147, 343, 1546, 3339, 3342, 3473, 3833, 4119
GlaI GCGC 2 cut(s) 1066, 3345
GluI GCNGC 8 cut(s) 147, 343, 1546, 3339, 3342, 3473, 3833, 4119
GsaI CCCAGC 2 cut(s) 1644, 3338
GsuI CTGGAG 6 cut(s) 1187, 1706, 2343, 2615, 3554, 4033
HaeII RGCGCY 1 cut(s) 1068
HaeIII GGCC 8 cut(s) 149, 467, 1019, 1498, 2736, 3133, 3531, 3722
HapII CCGG 3 cut(s) 1040, 1435, 3885
HgaI GACGC 1 cut(s) 1122
HhaI GCGC 2 cut(s) 1067, 3346
Hin6I GCGC 2 cut(s) 1065, 3344
HinP1I GCGC 2 cut(s) 1065, 3344
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HindIII AAGCTT 1 cut(s) 1092
HpaII CCGG 3 cut(s) 1040, 1435, 3885
HphI GGTGA 6 cut(s) 983, 1394, 1911, 1979, 2003, 2437
Hpy188I TCNGA 7 cut(s) 250, 523, 716, 991, 1743, 2334, 2551
Hpy99I CGWCG 1 cut(s) 1116
HpyCH4IV ACGT 7 cut(s) 614, 839, 1299, 1870, 2375, 2494, 3226
HpyF10VI GCNNNNNNNGC 3 cut(s) 339, 1160, 1325
HpySE526I ACGT 7 cut(s) 614, 839, 1299, 1870, 2375, 2494, 3226
HspAI GCGC 2 cut(s) 1065, 3344
KflI GGGWCCC 1 cut(s) 3456
Kpn2I TCCGGA 1 cut(s) 3884
Ksp22I TGATCA 2 cut(s) 1530, 1621
Kzo9I GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
LguI GCTCTTC 2 cut(s) 730, 2028
LmnI GCTCC 6 cut(s) 441, 2205, 2596, 3480, 3887, 4052
Lsp1109I GCAGC 6 cut(s) 354, 1532, 3350, 3353, 3484, 4130
MaeII ACGT 7 cut(s) 614, 839, 1299, 1870, 2375, 2494, 3226
MaeIII GTNAC 8 cut(s) 1051, 1175, 1842, 2819, 2876, 2941, 3061, 3614
MalI GATC 7 cut(s) 520, 527, 1413, 1532, 1623, 2872, 3637
MboI GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
MfeI CAATTG 4 cut(s) 18, 844, 1184, 1862
MflI RGATCY 1 cut(s) 2870
MhlI GDGCHC 3 cut(s) 384, 1526, 3767
MlsI TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
MluNI TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
MlyI GAGTC 5 cut(s) 133, 664, 1352, 2007, 3398
MmeI TCCRAC 5 cut(s) 16, 1659, 1768, 1863, 2227
Mox20I TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
Mph1103I ATGCAT 3 cut(s) 1410, 3120, 3525
MroI TCCGGA 1 cut(s) 3884
MroXI GAANNNNTTC 2 cut(s) 672, 3953
MscI TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
MslI CAYNNNNRTG 2 cut(s) 2316, 2349
Msp20I TGGCCA 4 cut(s) 1019, 1498, 3133, 3722
MspCI CTTAAG 2 cut(s) 1202, 3622
MspI CCGG 3 cut(s) 1040, 1435, 3885
MspR9I CCNGG 4 cut(s) 464, 3111, 3533, 3590
MunI CAATTG 4 cut(s) 18, 844, 1184, 1862
Mva1269I GAATGC 4 cut(s) 1330, 1333, 1410, 2368
MvaI CCWGG 4 cut(s) 464, 3111, 3533, 3590
MvnI CGCG 1 cut(s) 1447
MwoI GCNNNNNNNGC 3 cut(s) 339, 1160, 1325
NcoI CCATGG 1 cut(s) 3717
NdeI CATATG 1 cut(s) 415
NdeII GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
NheI GCTAGC 1 cut(s) 2213
NlaIV GGNNCC 3 cut(s) 3457, 3458, 3764
NmuCI GTSAC 3 cut(s) 2819, 2876, 3614
NruI TCGCGA 1 cut(s) 1447
NsiI ATGCAT 3 cut(s) 1410, 3120, 3525
NspI RCATGY 4 cut(s) 170, 287, 1460, 3122
NspV TTCGAA 1 cut(s) 3320
OliI CACNNNNGTG 1 cut(s) 2316
PaeI GCATGC 2 cut(s) 170, 287
PagI TCATGA 3 cut(s) 501, 1420, 3964
PaqCI CACCTGC 2 cut(s) 959, 4056
PasI CCCWGGG 1 cut(s) 3110
PceI AGGCCT 2 cut(s) 467, 3531
PciI ACATGT 1 cut(s) 1456
PciSI GCTCTTC 2 cut(s) 730, 2028
PctI GAATGC 4 cut(s) 1330, 1333, 1410, 2368
PdmI GAANNNNTTC 2 cut(s) 672, 3953
PflMI CCANNNNNTGG 1 cut(s) 2666
PkrI GCNGC 8 cut(s) 148, 344, 1547, 3340, 3343, 3474, 3834, 4120
PleI GAGTC 5 cut(s) 132, 663, 1352, 2006, 3397
PpsI GAGTC 5 cut(s) 132, 663, 1352, 2006, 3397
Ppu21I YACGTR 1 cut(s) 2376
PpuMI RGGWCCY 1 cut(s) 3456
PscI ACATGT 1 cut(s) 1456
PshAI GACNNNNGTC 2 cut(s) 1362, 2232
Psp124BI GAGCTC 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 614
Psp5II RGGWCCY 1 cut(s) 3456
Psp6I CCWGG 4 cut(s) 462, 3109, 3531, 3588
PspFI CCCAGC 2 cut(s) 1640, 3334
PspGI CCWGG 4 cut(s) 462, 3109, 3531, 3588
PspN4I GGNNCC 3 cut(s) 3457, 3458, 3764
PspPI GGNCC 3 cut(s) 2227, 3326, 3456
PspPPI RGGWCCY 1 cut(s) 3456
PstI CTGCAG 1 cut(s) 1550
PsuI RGATCY 1 cut(s) 2870
RruI TCGCGA 1 cut(s) 1447
RseI CAYNNNNRTG 2 cut(s) 2316, 2349
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 2 cut(s) 730, 2028
SatI GCNGC 8 cut(s) 147, 343, 1546, 3339, 3342, 3473, 3833, 4119
Sau3AI GATC 7 cut(s) 518, 525, 1411, 1530, 1621, 2870, 3635
Sau96I GGNCC 3 cut(s) 2227, 3326, 3456
ScaI AGTACT 2 cut(s) 639, 2122
SchI GAGTC 5 cut(s) 133, 664, 1352, 2007, 3398
ScrFI CCNGG 4 cut(s) 464, 3111, 3533, 3590
SduI GDGCHC 3 cut(s) 384, 1526, 3767
SfcI CTRYAG 4 cut(s) 726, 1546, 3977, 4113
SfuI TTCGAA 1 cut(s) 3320
SinI GGWCC 3 cut(s) 2227, 3326, 3456
SmiMI CAYNNNNRTG 2 cut(s) 2316, 2349
SmlI CTYRAG 5 cut(s) 1202, 1957, 2632, 3622, 3941
SmoI CTYRAG 5 cut(s) 1202, 1957, 2632, 3622, 3941
SnaBI TACGTA 1 cut(s) 2376
SpeI ACTAGT 1 cut(s) 2117
SphI GCATGC 2 cut(s) 170, 287
SseBI AGGCCT 2 cut(s) 467, 3531
SsiI CCGC 7 cut(s) 146, 2423, 3245, 3443, 3568, 3832, 3937
SspI AATATT 1 cut(s) 1397
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 2 cut(s) 467, 3531
StyD4I CCNGG 4 cut(s) 462, 3109, 3531, 3588
StyI CCWWGG 4 cut(s) 1767, 2230, 3717, 3912
TaiI ACGT 7 cut(s) 617, 842, 1302, 1873, 2378, 2497, 3229
TaqI TCGA 9 cut(s) 528, 1908, 2962, 3186, 3320, 3423, 3756, 3923, 4011
TatI WGTACW 6 cut(s) 637, 1082, 1087, 2120, 2268, 4052
TauI GCSGC 2 cut(s) 149, 3835
TscAI CASTG 8 cut(s) 1335, 1344, 1631, 2215, 2952, 3238, 3445, 3623
TseFI GTSAC 3 cut(s) 2819, 2876, 3614
TseI GCWGC 6 cut(s) 342, 1545, 3338, 3341, 3472, 4118
Tsp45I GTSAC 3 cut(s) 2819, 2876, 3614
TspGWI ACGGA 5 cut(s) 293, 1160, 2297, 3115, 3631
TspRI CASTG 8 cut(s) 1335, 1344, 1631, 2215, 2952, 3238, 3445, 3623
Van91I CCANNNNNTGG 1 cut(s) 2666
Vha464I CTTAAG 2 cut(s) 1202, 3622
VpaK11BI GGWCC 3 cut(s) 2227, 3326, 3456
XbaI TCTAGA 4 cut(s) 866, 2776, 2794, 2890
XceI RCATGY 4 cut(s) 170, 287, 1460, 3122
XcmI CCANNNNNNNNNTGG 2 cut(s) 435, 2144
XmiI GTMKAC 1 cut(s) 1873
XmnI GAANNNNTTC 2 cut(s) 672, 3953
ZrmI AGTACT 2 cut(s) 639, 2122
Zsp2I ATGCAT 3 cut(s) 1410, 3120, 3525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.