Rh5AG125100

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000042
Physical Location & Seq
Forward (+)
11787599 .. 11791762
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG125100.1

Sequence Viewer

Length: 2259 bp
ATGAGAAACAGTTTTAAAAAATGGGAGGTTGAAGGTGGAGGAAGTAATGCAAGCCTTTCAGAGCTGAAGTATTTGTCTCTGCTATCTGCATTAGAAATATGTATTCCGAATGTTGATGCTCTTCCAGCAAACTTGTTCTCCCACAAGTTAGAAAGATTCAATATTTTTATTGGGGATGCGTGGGATGCGTGGGATGCGAGATCTCCATGGAAGAAACTTAGGAATGCGATGATCCTCAACACATTGAAACTCAAGCTTAATAAAGAATTAGATGAAAGCCTAAAATGGCTATTAAAGAACTCTGAAGACTTGTCCTTGGATGAGACGGAGGTTGTTGTTGTCCATGATTTGAATGCCGAAGATTTTGAGAATAAGATACATCTCCAACTCCAAAACAATGTTGATTTTATGGCTATGGTTAACAAGAAGGTCGTGTTGCCCAACTTAGCAACTTTGTCGGTGCATGGATGTGATAATTTAAAATTTTTGTTCTCATTTTCCATGGCTAAAAGTCTTGAACAGCTCACACATCTGAAGGTAACCGCCTGTAAACTCCTGCAAGAGATTGTATCATCGACAAGAGAAGGCGGTGAGGACAATATGAATGAAATGTTTTCTAAACTTGAAGTTTTGAAGCTTGAAGAACTTCCAAACCTCGCTAGATTCAGCACAGGAAATTATATTGAGTTTCCGTCATTGAAAAAATTAGAGGTAGAGGATTGTGACAATCTAGGGGTATTCATTGGTGATGAAGTTTCTATGAGTAGTAAAGACACCAGAAGCTGCAAAGAAATTGAACAAAGGATCTTGGAAGAGGAAGAGAACCTTGAAGTCAAGAGTGAGACTGTTGTGAAATACTCCCTCTTTAACGAAAAGGTGGGATTTCCTATCTTGGAAAGATTGAGCATCAAGGGGATAAGGGAGTTGAAGGCGATATGGCACGTCCAACAATCTCAAAACTCTTTTTGGAGACTCAAGCAAGTTGAGGTTCGGGAATGTGACAATCTAATAAGTTTATTTCCGCCTAGTGTCATGAGAAGATTGGATACGCTGGAAACCTTGGAGATACGGAACTGCAAATCACTAGAAGTGGTATGTGAGGAAATTGTTGTTGCAGAAGAGGAACAAGAAGTTGTAGAAACAACACCTTCTCCATTTGTATTTCAAAAAGTAACATCCGTGGAGTTGAGGAATCTACCTCAACTTACGGGTTGCATAAATGCTTCACAGTGGCCATCACTCAAACGATTGGAGGTGGAGGGATGTGATAAAGTGGGAATTTTTGCCACAGAATTTTCTCACTTTAGAACGAAATATGAGATGGAACCTCTAATGACGTCTCAAAAGCCACTATTTCTAACCGACAAGGATTCGTTCCTCGACTTGGAACACTTACCATTGTTTGGCATGGAAATTTGGGATGGACCACCCCCAGCGGATCAGTTGGTGTTTGGCAAATTAAAATCAATCTGCTCTTATGGGAATTGTGCACCTTTCTCCAAGCAAGCTTCGGTCCTTTTCCTCCAGAGATTACAAAATCTTGAAGAAATTGAAATGGGAGACAACTCTTACGAAAGAATTAGTGGTTGCACTACTAGCGAAGAAATACATGATGATGCAGTTGGGAGTGGGACCCTCCCCCGTGTAAGGAGTTTGACGCTGTCCCGTATGGACCAACTGATGGATCTAGAGAACGACAACTCCCAATCACTACTTTTTCCAAATTTGGAAACCCTTCAGCTGTGGTTTTGTTCCAGATTAAAAAGTATAGAGTCATCCGCAATATCCTTCCGGAATCTTACAACTTTGAAAGTATTGTTGTGTGATGGATTTGAATATATAACAAGTTATTCAGTGGCTAAAAGCTTAGTGCAACTCAAAACATTGGAGGTGGACTCATGTCAAAGTGTTGTAGTGATAGTGGCAAGCAATGTGGGAGACGATGATGCTGATGATGCCCCTGGAAATGAGATTGTTTTCAGCCACTTGCAACATTTGAGTCTAGGTGGTCTACCAAGGCTACAAGGCTTTTCCTCCGAAAATTGCACAGTCAAATTCCCATCCTCCGTGACCTTATGGGTATATTTATGCCCGATTAAGTTGAAGATTTCCCCTGATGGGGTCCTCCTAAAAGTAATAGAGGATCAATGTGAGCAAAAAGGAGATGATGACATTGACAATGATGATGATCAACAGAAAAATGATGTTGAATCAGCTCGGAGGACTCCTAAAATATCATCAGAAGAGCCTGCTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

752

Amino Acids

85.14

Weight (kDa)

4.78

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 136 - 244 4.4e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 287 - 360 9.7e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 301 - 424 3.4e-17 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 462 - 590 8.4e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 593 - 675 5.4e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1340
AccB7I CCANNNNNTGG 2 cut(s) 1403, 1681
AccI GTMKAC 1 cut(s) 2011
AccIII TCCGGA 1 cut(s) 1791
AciI CCGC 5 cut(s) 543, 588, 1022, 1436, 1779
AclWI GGATC 5 cut(s) 226, 812, 1446, 1692, 2151
AcoI YGGCCR 1 cut(s) 1232
AcsI RAATTY 6 cut(s) 482, 1278, 1292, 1413, 1723, 2054
AcuI CTGAAG 4 cut(s) 86, 324, 554, 1721
AcyI GRCGYC 1 cut(s) 1337
AfiI CCNNNNNNNGG 6 cut(s) 1384, 1403, 1647, 1681, 2118, 2119
AjiI CACGTC 1 cut(s) 943
AjnI CCWGG 1 cut(s) 1960
AloI GAACNNNNNNTCC 2 cut(s) 1685, 1717
AluBI AGCT 9 cut(s) 64, 256, 523, 637, 783, 1508, 1741, 1866, 2216
AluI AGCT 9 cut(s) 64, 256, 523, 637, 783, 1508, 1741, 1866, 2216
Alw21I GWGCWC 1 cut(s) 1492
Alw26I GTCTC 7 cut(s) 81, 317, 836, 964, 1344, 1554, 1932
Alw44I GTGCAC 1 cut(s) 1488
AlwI GGATC 5 cut(s) 226, 812, 1446, 1692, 2151
AlwNI CAGNNNCTG 1 cut(s) 783
Aor13HI TCCGGA 1 cut(s) 1791
AoxI GGCC 1 cut(s) 1232
ApaLI GTGCAC 1 cut(s) 1488
ApeKI GCWGC 1 cut(s) 783
ApoI RAATTY 6 cut(s) 482, 1278, 1292, 1413, 1723, 2054
Asp700I GAANNNNTTC 2 cut(s) 645, 1734
AspS9I GGNCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
AsuHPI GGTGA 2 cut(s) 602, 758
AvaII GGWCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
BaeGI GKGCMC 1 cut(s) 1492
BalI TGGCCA 1 cut(s) 1234
BarI GAAGNNNNNNTAC 2 cut(s) 1030, 1062
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 1492
BbvI GCAGC 1 cut(s) 770
BccI CCATC 7 cut(s) 1243, 1315, 1415, 1675, 1820, 2068, 2111
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BciT130I CCWGG 1 cut(s) 1962
BciVI GTATCC 1 cut(s) 1039
BclI TGATCA 1 cut(s) 2188
BcoDI GTCTC 7 cut(s) 81, 317, 836, 964, 1344, 1554, 1932
BfaI CTAG 8 cut(s) 660, 731, 1026, 1085, 1596, 1688, 2003, 2257
BfuI GTATCC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 200
BisI GCNGC 1 cut(s) 784
BlsI GCNGC 1 cut(s) 785
Bme1390I CCNGG 1 cut(s) 1962
Bme18I GGWCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
BmgBI CACGTC 1 cut(s) 943
BmgT120I GGNCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
BmiI GGNNCC 4 cut(s) 1326, 1633, 1634, 2123
BmrFI CCNGG 1 cut(s) 1962
BmsI GCATC 8 cut(s) 106, 166, 175, 184, 915, 1606, 1936, 1945
BoxI GACNNNNGTC 1 cut(s) 1899
BpiI GAAGAC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 1880, 1912
BpmI CTGGAG 1 cut(s) 1508
BpuEI CTTGAG 2 cut(s) 236, 959
BsaBI GATNNNNATC 1 cut(s) 2187
BsaHI GRCGYC 1 cut(s) 1337
BsaJI CCNNGG 7 cut(s) 206, 315, 501, 1059, 1179, 1960, 2015
BsaWI WCCGGW 1 cut(s) 1791
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 1135, 1165, 1685, 1715
Bsc4I CCNNNNNNNGG 6 cut(s) 1384, 1403, 1647, 1681, 2118, 2119
Bse3DI GCAATG 1 cut(s) 1936
Bse8I GATNNNNATC 1 cut(s) 2187
BseAI TCCGGA 1 cut(s) 1791
BseBI CCWGG 1 cut(s) 1962
BseDI CCNNGG 7 cut(s) 206, 315, 501, 1059, 1179, 1960, 2015
BseJI GATNNNNATC 1 cut(s) 2187
BseLI CCNNNNNNNGG 6 cut(s) 1384, 1403, 1647, 1681, 2118, 2119
BseMI GCAATG 1 cut(s) 1936
BseSI GKGCMC 1 cut(s) 1492
BseXI GCAGC 1 cut(s) 770
BseYI CCCAGC 1 cut(s) 1432
BshFI GGCC 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 1492
BsiSI CCGG 1 cut(s) 1792
BslFI GGGAC 2 cut(s) 1645, 1648
BslI CCNNNNNNNGG 6 cut(s) 1384, 1403, 1647, 1681, 2118, 2119
BsmAI GTCTC 7 cut(s) 81, 317, 836, 964, 1344, 1554, 1932
BsmBI CGTCTC 3 cut(s) 317, 1344, 1932
BsmFI GGGAC 2 cut(s) 1645, 1648
BsmI GAATGC 2 cut(s) 229, 358
BsnI GGCC 1 cut(s) 1234
Bsp1286I GDGCHC 1 cut(s) 1492
Bsp13I TCCGGA 1 cut(s) 1791
Bsp143I GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
Bsp19I CCATGG 2 cut(s) 206, 501
BspACI CCGC 5 cut(s) 543, 588, 1022, 1436, 1779
BspANI GGCC 1 cut(s) 1234
BspEI TCCGGA 1 cut(s) 1791
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 4 cut(s) 1326, 1633, 1634, 2123
BspPI GGATC 5 cut(s) 226, 812, 1446, 1692, 2151
BspQI GCTCTTC 2 cut(s) 126, 2238
BsrDI GCAATG 1 cut(s) 1936
BssECI CCNNGG 7 cut(s) 206, 315, 501, 1059, 1179, 1960, 2015
BssMI GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
BssNI GRCGYC 1 cut(s) 1337
BssT1I CCWWGG 5 cut(s) 206, 315, 501, 1059, 2015
Bst2UI CCWGG 1 cut(s) 1962
Bst4CI ACNGT 4 cut(s) 11, 847, 1230, 2050
Bst6I CTCTTC 5 cut(s) 126, 807, 813, 1113, 2238
BstACI GRCGYC 1 cut(s) 1337
BstC8I GCNNGC 4 cut(s) 52, 1506, 1927, 2250
BstDEI CTNAG 3 cut(s) 218, 445, 1867
BstDSI CCRYGG 3 cut(s) 206, 501, 1179
BstEII GGTNACC 1 cut(s) 538
BstKTI GATC 7 cut(s) 203, 234, 807, 1441, 1687, 2146, 2191
BstMAI GTCTC 7 cut(s) 81, 317, 836, 964, 1344, 1554, 1932
BstMBI GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
BstMWI GCNNNNNNNGC 5 cut(s) 125, 185, 194, 1596, 1955
BstNI CCWGG 1 cut(s) 1962
BstPAI GACNNNNGTC 1 cut(s) 1899
BstPI GGTNACC 1 cut(s) 538
BstSCI CCNGG 1 cut(s) 1960
BstSLI GKGCMC 1 cut(s) 1492
BstV1I GCAGC 1 cut(s) 770
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 3 cut(s) 200, 804, 1684
BstYI RGATCY 3 cut(s) 200, 804, 1684
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 1 cut(s) 1234
BtgI CCRYGG 3 cut(s) 206, 501, 1179
BtgZI GCGATG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 943
BtsIMutI CAGTG 2 cut(s) 1235, 1860
Cac8I GCNNGC 4 cut(s) 52, 1506, 1927, 2250
CaiI CAGNNNCTG 1 cut(s) 783
CciI TCATGA 1 cut(s) 1032
Cfr13I GGNCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
CseI GACGC 1 cut(s) 1666
CspCI CAANNNNNGTGG 2 cut(s) 1914, 1949
CviAII CATG 8 cut(s) 207, 344, 464, 502, 1033, 1408, 1610, 1899
DdeI CTNAG 3 cut(s) 218, 445, 1867
DpnI GATC 7 cut(s) 202, 233, 806, 1440, 1686, 2145, 2190
DpnII GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
DraI TTTAAA 2 cut(s) 16, 480
EaeI YGGCCR 1 cut(s) 1232
Eam1104I CTCTTC 5 cut(s) 126, 807, 813, 1113, 2238
EarI CTCTTC 5 cut(s) 126, 807, 813, 1113, 2238
EciI GGCGGA 1 cut(s) 1011
Eco130I CCWWGG 5 cut(s) 206, 315, 501, 1059, 2015
Eco47I GGWCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
Eco57I CTGAAG 4 cut(s) 86, 324, 554, 1721
Eco91I GGTNACC 1 cut(s) 538
EcoO109I RGGNCCY 2 cut(s) 1632, 2122
EcoO65I GGTNACC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 1960
EcoT14I CCWWGG 5 cut(s) 206, 315, 501, 1059, 2015
ErhI CCWWGG 5 cut(s) 206, 315, 501, 1059, 2015
Esp3I CGTCTC 3 cut(s) 317, 1344, 1932
FaeI CATG 8 cut(s) 210, 347, 467, 505, 1036, 1411, 1613, 1902
FalI AAGNNNNNCTT 2 cut(s) 810, 842
FaqI GGGAC 2 cut(s) 1645, 1648
FatI CATG 8 cut(s) 206, 343, 463, 501, 1032, 1407, 1609, 1898
FbaI TGATCA 1 cut(s) 2188
FblI GTMKAC 1 cut(s) 2011
Fnu4HI GCNGC 1 cut(s) 784
Fsp4HI GCNGC 1 cut(s) 784
FspBI CTAG 8 cut(s) 660, 731, 1026, 1085, 1596, 1688, 2003, 2257
GluI GCNGC 1 cut(s) 784
GsaI CCCAGC 1 cut(s) 1436
GsuI CTGGAG 1 cut(s) 1508
HaeIII GGCC 1 cut(s) 1234
HapII CCGG 1 cut(s) 1792
HgaI GACGC 1 cut(s) 1666
Hin1I GRCGYC 1 cut(s) 1337
Hin1II CATG 8 cut(s) 210, 347, 467, 505, 1036, 1411, 1613, 1902
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 4 cut(s) 254, 635, 1506, 1864
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 1 cut(s) 1792
HphI GGTGA 2 cut(s) 602, 758
Hpy166II GTNNAC 5 cut(s) 421, 551, 1490, 1894, 2012
Hpy188I TCNGA 7 cut(s) 61, 108, 304, 534, 2038, 2220, 2242
Hpy188III TCNNGA 9 cut(s) 515, 835, 992, 1033, 1525, 1541, 1688, 1755, 1792
Hpy8I GTNNAC 5 cut(s) 421, 551, 1490, 1894, 2012
HpyAV CCTTC 8 cut(s) 26, 421, 529, 578, 922, 1158, 1745, 1798
HpyCH4III ACNGT 4 cut(s) 11, 847, 1230, 2050
HpyCH4IV ACGT 2 cut(s) 942, 1337
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 185, 194, 1596, 1955
HpyF3I CTNAG 3 cut(s) 218, 445, 1867
HpySE526I ACGT 2 cut(s) 942, 1337
Hsp92I GRCGYC 1 cut(s) 1337
Hsp92II CATG 8 cut(s) 210, 347, 467, 505, 1036, 1411, 1613, 1902
KflI GGGWCCC 1 cut(s) 1632
Kpn2I TCCGGA 1 cut(s) 1791
Ksp22I TGATCA 1 cut(s) 2188
KspAI GTTAAC 1 cut(s) 421
Kzo9I GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
LguI GCTCTTC 2 cut(s) 126, 2238
Lsp1109I GCAGC 1 cut(s) 770
LweI GCATC 8 cut(s) 106, 166, 175, 184, 915, 1606, 1936, 1945
MaeI CTAG 8 cut(s) 660, 731, 1026, 1085, 1596, 1688, 2003, 2257
MaeII ACGT 2 cut(s) 942, 1337
MaeIII GTNAC 5 cut(s) 538, 722, 998, 1171, 2068
MalI GATC 7 cut(s) 202, 233, 806, 1440, 1686, 2145, 2190
MboI GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
MflI RGATCY 3 cut(s) 200, 804, 1684
MhlI GDGCHC 1 cut(s) 1492
MlsI TGGCCA 1 cut(s) 1234
MluNI TGGCCA 1 cut(s) 1234
MlyI GAGTC 5 cut(s) 966, 1781, 1889, 2008, 2218
MmeI TCCRAC 2 cut(s) 409, 970
Mox20I TGGCCA 1 cut(s) 1234
MroI TCCGGA 1 cut(s) 1791
MroXI GAANNNNTTC 2 cut(s) 645, 1734
MscI TGGCCA 1 cut(s) 1234
MseI TTAA 9 cut(s) 15, 258, 293, 420, 479, 867, 1460, 1760, 2097
MslI CAYNNNNRTG 2 cut(s) 468, 1614
Msp20I TGGCCA 1 cut(s) 1234
MspA1I CMGCKG 2 cut(s) 1436, 1741
MspI CCGG 1 cut(s) 1792
MspR9I CCNGG 1 cut(s) 1962
Mva1269I GAATGC 2 cut(s) 229, 358
MvaI CCWGG 1 cut(s) 1962
MwoI GCNNNNNNNGC 5 cut(s) 125, 185, 194, 1596, 1955
NcoI CCATGG 2 cut(s) 206, 501
NdeII GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
NlaIII CATG 8 cut(s) 210, 347, 467, 505, 1036, 1411, 1613, 1902
NlaIV GGNNCC 4 cut(s) 1326, 1633, 1634, 2123
NmuCI GTSAC 3 cut(s) 722, 998, 2068
PagI TCATGA 1 cut(s) 1032
PciSI GCTCTTC 2 cut(s) 126, 2238
PctI GAATGC 2 cut(s) 229, 358
PdmI GAANNNNTTC 2 cut(s) 645, 1734
PfeI GAWTC 6 cut(s) 156, 663, 1192, 1370, 1795, 2210
PflFI GACNNNGTC 1 cut(s) 1660
PflMI CCANNNNNTGG 2 cut(s) 1403, 1681
PkrI GCNGC 1 cut(s) 785
PleI GAGTC 5 cut(s) 966, 1780, 1889, 2007, 2218
PpsI GAGTC 5 cut(s) 966, 1780, 1889, 2007, 2218
PpuMI RGGWCCY 2 cut(s) 1632, 2122
PshAI GACNNNNGTC 1 cut(s) 1899
Psp5II RGGWCCY 2 cut(s) 1632, 2122
Psp6I CCWGG 1 cut(s) 1960
PspEI GGTNACC 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 1432
PspGI CCWGG 1 cut(s) 1960
PspN4I GGNNCC 4 cut(s) 1326, 1633, 1634, 2123
PspPI GGNCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
PspPPI RGGWCCY 2 cut(s) 1632, 2122
PstNI CAGNNNCTG 1 cut(s) 783
PsuI RGATCY 3 cut(s) 200, 804, 1684
PsyI GACNNNGTC 1 cut(s) 1660
PvuII CAGCTG 1 cut(s) 1741
RseI CAYNNNNRTG 2 cut(s) 468, 1614
SapI GCTCTTC 2 cut(s) 126, 2238
SaqAI TTAA 9 cut(s) 15, 258, 293, 420, 479, 867, 1460, 1760, 2097
SatI GCNGC 1 cut(s) 784
Sau3AI GATC 7 cut(s) 200, 231, 804, 1438, 1684, 2143, 2188
Sau96I GGNCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
SchI GAGTC 5 cut(s) 966, 1781, 1889, 2008, 2218
ScrFI CCNGG 1 cut(s) 1962
SduI GDGCHC 1 cut(s) 1492
SfaNI GCATC 8 cut(s) 106, 166, 175, 184, 915, 1606, 1936, 1945
SinI GGWCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
SmiMI CAYNNNNRTG 2 cut(s) 468, 1614
SmlI CTYRAG 2 cut(s) 251, 974
SmoI CTYRAG 2 cut(s) 251, 974
SsiI CCGC 5 cut(s) 543, 588, 1022, 1436, 1779
SspI AATATT 1 cut(s) 163
SspMI CTAG 8 cut(s) 660, 731, 1026, 1085, 1596, 1688, 2003, 2257
StyD4I CCNGG 1 cut(s) 1960
StyI CCWWGG 5 cut(s) 206, 315, 501, 1059, 2015
TaaI ACNGT 4 cut(s) 11, 847, 1230, 2050
TaiI ACGT 2 cut(s) 945, 1340
TaqI TCGA 2 cut(s) 575, 1380
TaqII GACCGA 1 cut(s) 1501
TfiI GAWTC 6 cut(s) 156, 663, 1192, 1370, 1795, 2210
Tru1I TTAA 9 cut(s) 15, 258, 293, 420, 479, 867, 1460, 1760, 2097
Tru9I TTAA 9 cut(s) 15, 258, 293, 420, 479, 867, 1460, 1760, 2097
TscAI CASTG 2 cut(s) 1235, 1860
TseFI GTSAC 3 cut(s) 722, 998, 2068
TseI GCWGC 1 cut(s) 783
Tsp45I GTSAC 3 cut(s) 722, 998, 2068
TspDTI ATGAA 5 cut(s) 288, 617, 621, 730, 765
TspGWI ACGGA 5 cut(s) 341, 681, 1084, 1168, 2056
TspRI CASTG 2 cut(s) 1235, 1860
Tth111I GACNNNGTC 1 cut(s) 1660
Van91I CCANNNNNTGG 2 cut(s) 1403, 1681
VneI GTGCAC 1 cut(s) 1488
VpaK11BI GGWCC 5 cut(s) 1424, 1513, 1632, 1672, 2122
XapI RAATTY 6 cut(s) 482, 1278, 1292, 1413, 1723, 2054
XbaI TCTAGA 1 cut(s) 1687
XmiI GTMKAC 1 cut(s) 2011
XmnI GAANNNNTTC 2 cut(s) 645, 1734
XspI CTAG 8 cut(s) 660, 731, 1026, 1085, 1596, 1688, 2003, 2257
ZraI GACGTC 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.