RLG00000009550

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
54372234 .. 54381941
9708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009550

Sequence Viewer

Length: 5091 bp
ATGGAGTTTCTTCTTGCAATTGGTACTGGAATTGTTGGAAAGATTGCCGAGTACACAGTTGATCCAGTTATACGCCAAGTGGAATATGTAATCTACTACAACAGGAACCTCAAGAAACTACAGAGTCAACTGGGTGACTTGGGTGATGCTAGACTAAGGGTGTGGCATGCTGTGGAAACAGAAAACAGAAAAGGTAAAAAAATTGAAACAGATGTGCACAACTGGCTGACTAAAGTGGAAGAGATCACGGCAGAAGCAAATGATTTTTTGAAAGCTGAACACCAAGCAAAGATCAAATGTCTACAAGGCTTTTGCCCTAATTTAAAGCTTCGCCATCAGTTGAGCAGGAAGTCTACAAAATTGGTTCAAGAGGTCGTTGAACTGTTTGGCAAAAAAGATTTTGCTAGTATTGCATACGATGTTTCCCCAGAAGAGGTATGTGCAATATCTACGAAAGATTACGAGGCCTTTGATTCAAGGACTTCAGTTGTGAAGCAAATTATGGATGAACTGAGAAACTCTGATACAGACATAATTGGGGTGTATGGTATTGGGGGCGTGGGTAAGACAACACTTGTCAAAGAAGTTTATAGGCAGGCTATAAAAGACAAGAAGCTGTTTGATGATGTGGTGATAATAGTTGATGTGAAGCAAATTTCAGACTTAGAAGGAATTCAAAAAAAAGTTGTTGATAAGTTGGGTATGGACATTGTTGGAGATGAAAGTATGGATAGAAGAGCACGTCGTCTATGTGATAGGTTGAAAGACAAAAGGGCTCTTATAATTTTGGATGATGTTGTTGAAAGAATTGATTTGGAGGTTGTGGGCCTTCCTCGCTTGGTGACTTGTAAAATATTGTTGACATCTAGAAGCAGACGAGTATTATCTGTTGAGATGCATACACAAAAAGAGTTCCAGCTCCACGTATTAGATGAGGAAGAAACATGGAGTTTATTTGCCAAGATGGCTGGTGACGTAGTCAAAAATCCCAATATACGGACAGTAGCCACTAAAGTAGCTGGAAAATGTGGGGGATTGCCGGTTTTGGTTGTCACTGTTGCAAGTGCTTTAAAGAAGAGTACACTGAATGCATGGAAAGACGCTTTGAGAAGACTACAGAAGTTTGACAAAGAAGGATTTACTGAAAAAGCATACTTGGCTCTGGAGAGGAGTTACAATCAGTTGGATGAGGCGGAGCTTAAGTCATTATTCTTGCTTTGTGGACTTCTGTTAGGATACACGAAGAGTGCTTCGTTTGATGACTTGTTAAAGTATGGCATGGGTTTGGGTTTGTTCAAAAGTCTGGCAACAATCGAAGAAGCAAGAAATGCATTGCATTTGCTGCTTGAAAAGCTAAAAGATTCTTGCTTATTGGTGGACAGTGATGATATCACATGTACCGGAATGCATGATCTTGTACGAGATGTTTCTAACCGAATTGCATTAAGAGATCATCATGTCTTATCATTAGCACAAGGAAATGAGTTGAAAGAATGGCCTAATAAGGAGTTTCTTAAAAAGTGCACCGCAATCTCTTCCCCTTACTGCAATATCCCCAAATTTCCTGATGTTTTGGGATGCCCAGAACTGAAGATATTTTATTTGTGGGGTGATGATCATGACCGACTAGAAATTCCATGCAACCTTTTTCAAGACATGGAAAACCTCAGGGTGTTGGATCTAACCAAGTTGTGTATTTGGCCATCACTACCTCCATCTATTCAGTTCCTGAGGAATCTTCAGACACTAGGTTTCTATAATTGCATACTGGGAGACATAGCTCAAATTGGGCAATTGGGAAACTTAGAATTTCTTACTTTTTATGGATCCAATGTCAAGTTGTTGCCCAAAGAAATTGGACAATTGACTCGTCTACGATTACTGGATTTGACTGATTGCTCCAAACTAGAAGTGATATCACCATATGTTATATCAAGTTTGAAAAGACTAGAAGAACTGAGAATAGGAAAAAACAGCTTTTCCCAATGGGAGTATGAAGGAGTCACGAATATAGAAAGAAGTAATGCAAGCCTTCAAGAGCTAAAGCACTTGTCTCAGTTAACCTCGTTACAAATACATATACCAGATGCTAGCATTCTTCCAGCAGATTTGTTCACTGATAAGTTGGAGAGATTCCAAATATGTATTGGTTCTGTGTGGAATTGGGATGATGTGGATGAAACCCTCAATGCACTAAAGCTCCAACTCACTATCAGCAATGAATTAGACCATGGTCTAGAAATGTTGCTGAAAAGAACTGAAGACTTGTACTTGGAGGGGATGGAGAGTTTTAATAGCAATATTGTCCATCAATTAGGAACTGAAGGTTTTCAGCAACTGAAACATCTCCACGTTCAAAACAGTGCTGGACTTCCATACATCATTAATGGGAAGGTCAGCTTTCCCAACTTGACATGGTTGGCAGTGAGTGAACTCAACGGTTTAAGATTCTTGTTATCATCTTCAATGGCTAGAAGTCTTGCACATCTCAAACATCTTCAGATATCTGGATGCCAAATGATGGAAGAGATAGTATCAATAGAAGAATCTGATGAGGAAAATGTAGGGAACATATTTTGCCAGCTGCAAGATCTGGAACTAAAAGACCTCCCAAACTTCACTAAATTTAGCTCAAAATGTTATACTGCACTCCCCAATCCATCCTTCCGGAGATTGCAATTAGAGAACTGTACTAAAACTAATACCGTTTGTGAAGAAATTGAAGAGGCAGACTCAAGGGGAAACCTTGACATTGCGATACAACACTTTCTTTTTGACAATAAGGTAGAGTTTCCAAACTTGAAGAAGTTATCCATTGGTGGCCTAGCAAAGTTGACAACATTATGGAACAATCAGTTTTCTCTAGAGAGTTCAAAAAATCTAGAGACAATAGAAATTGTTTCATGTGACAATTTGAAAAGTATATTTCCGTCCTCAGTGGCCAGAAGACTTCAACAATTGAGGAGCTTGACAGTAAGGAATTGTGGGGTGGAGGAAATCGTCTCGAAAGAAGACGCTGTACTAACAACAACATCTATATGTACTGAAGTGCAGATATTTGCGAACGCCATGCCTGAGTTGAATAATCTTTGCACTCCAAATAAACAATCTTTGTTTTCACTCGAGAAGGATTCATTTCCCAACTTGGAAGCTTTGGGCTTCAACGCATGTGAGAATTGGGTTAGCGTGCCACTCCACTTGCTTAGGAGGCTAAAAAGTCTTCGTATTTATGCACATACCAACTCATCTTTGAATTCCCTTGAGAAATTATTTGGTCTTGGAAAAGTTGGAGATGGGACCCTCCCACTTTTAAGAGAATTGCACCTTCATGGGATGCAGAAGCTAATGAATCTTGAGGATGACAGCTTCGGACCAGCAGGGATTGAAATACTTGATATCGCACAATGGAAACCCCGACTGGAGACATTCATCATTGATACTATGGATAGTACAATTGGCAAGGACATCAAAGCCACCGACTCAAACGAAAACATTGAGACTGGATCCGTAGTGCAACAATTTCTTTTTGACGACAAGATTGAATTTCCGAGGTTGAAGAGTTTGTCTCTCAAGGGTCTAACAAAGTTAAACACAATATGGCACAGTCAACTCTCTCTGAACTCTTTTAGCAGTCTAAAAGACCTTGAAGTACATGAATGTGGAAATCTAATAAATATCTTTTCGTCCGGTACTATGGGAAGATTGAATGCTCTTGAGACCTTATTGATAAAAGAGTGCAAGTCAGTACAAGTTGTATTTGAGCTTGGAGGAATTGATGTTATAGAAGAACAGGACACATCAGCAGTCACTCAGTCGAAACCTTTTGATTGTGAAAATCTAAACTCGGTAGAGATTGATTCCTGTGAGAGTTTGAAATATATATTTCCAGCGTCGGTGGCCAAAAGTCTTCAGAGGTTGAGCAAATTGATCGTGAGTAAGTGTGGAGTAGAGAAAATCATTGCAAACGAATTAGGGGAACCACAAACAACGCCAGTGTTTGTTTTTTCAAAAGTCACATATGTGAGTTTTAAAGAATTGCCCCAACTTACGTGTTTCTATCCAGCCATGCATGCTTCAACTTGGCCAGCACTACAAAAGTTGGTGGTTGTAGGATGTTACAAATTGGAGATTTTCTCTGAGGCACTTTCAAGCTTTCAAGGGAAATATGAATCAAGCCCGTCCACTCCATTTAAACAAACTCTCTTTTCAATTGAGAAGGATTCATTCGCCAACTTGGAAGACTTGAGTTTACGCAGCATGGAGATTTGGAATGGTCCACTTCCGGTCCACTTCTTCAGAAAACTAAAATCTCTTACAGTTTGTTGTCCAAAGTCCAAGTCAGTTGTTTTCCTTGACAAATTACTCGATGAAGGAAACTCTAGTACTTGTACTAGGCAAAGAGAGGATGCAGTTGAGATTGGGACCCTCCCACATTTAAGAGAGTTGGATCTTCGTTTAATGCCCAAGCTGATGCATCTTGGCGAGGATAACTCACAATCAGCCCCCCGCATCCCAAATTTTCCAAATCTCGAAATTCTACTGCTGAATGGTTGCGACAGCTTACAGAATCTAAGATCATCCGCAATATCCTTCAAGAATCTGACAACTTTGAAAGTAAGTCGTTGCAACGGATTGAAGTACTTGCTAACTTACTCCGTGGCCAAAGGTTTGAGACAGCTCACAAAACTGGAAGTTGAGGATTGTAAGAGACTTGTAAGTATAGTGGGAAGCACCGAAGAAGACGAGTCGGGAAATAATAATGAGATTATATTCAGGCGGTTGAAACATTTGATACTTTCTTTTCTACCAAGACTGCGAGGCTTTTGCTCCGGAAATTGCATTGCTAAATTCCCAGCCTTGAAAACTTTATCCATCAGCAACCGTCTCAAATTGAAGCTTTTCCCGGCTCAAGACGAACCGCTACAGACAACAAACGAGGAGGAGGACACAGATGTCGATTCCTGGGAGGCGAAGCTGACTGCTGAGGATGAAATGAATTTGGCAAGTACTGATTTGATTCTACTGCTCCACCTCGCCGAAATTGCTCCTCTTTTCTGGTCTGGCTTGAGTGGAAGTTGTTCACCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1697

Amino Acids

191.09

Weight (kDa)

5.67

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 162 - 324 1.5e-30 NB-ARC domain
LRR_14 PF23598 516 - 791 1.3e-14 Leucine-rich repeat region
LRR_RPS2 PF23247 791 - 901 1.1e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 890 - 996 6e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1186 - 1261 1.4e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1275 - 1315 2.6e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1401 - 1525 2.2e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1529 - 1636 8.4e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AasI GACNNNNNNGTC 1 cut(s) 4952
AccB7I CCANNNNNTGG 1 cut(s) 2521
AccI GTMKAC 3 cut(s) 301, 353, 1873
AccIII TCCGGA 2 cut(s) 2667, 4829
AciI CCGC 6 cut(s) 1193, 1527, 4507, 4581, 4777, 4919
AclWI GGATC 7 cut(s) 56, 1686, 1821, 1834, 3498, 3511, 4455
AcoI YGGCCR 5 cut(s) 1700, 2940, 3897, 4082, 4659
AcuI CTGAAG 9 cut(s) 468, 1610, 1724, 2280, 2343, 2483, 3066, 3893, 4279
AfiI CCNNNNNNNGG 3 cut(s) 433, 996, 2521
AflII CTTAAG 1 cut(s) 1199
AflIII ACRYGT 2 cut(s) 1394, 4049
AjiI CACGTC 1 cut(s) 743
AjnI CCWGG 1 cut(s) 4961
AjuI GAANNNNNNNTTGG 2 cut(s) 2648, 2680
AleI CACNNNNGTG 1 cut(s) 4019
Alw21I GWGCWC 3 cut(s) 219, 742, 1526
Alw44I GTGCAC 2 cut(s) 215, 1522
AlwI GGATC 7 cut(s) 56, 1686, 1821, 1834, 3498, 3511, 4455
AlwNI CAGNNNCTG 2 cut(s) 1729, 2338
Ama87I CYCGRG 1 cut(s) 3122
Aor13HI TCCGGA 2 cut(s) 2667, 4829
AoxI GGCC 9 cut(s) 465, 826, 1496, 1700, 2821, 2940, 3897, 4082, 4659
ApaLI GTGCAC 2 cut(s) 215, 1522
ApeKI GCWGC 3 cut(s) 1342, 2584, 4254
ArsI GACNNNNNNTTYG 2 cut(s) 4322, 4354
AseI ATTAAT 1 cut(s) 2385
Asp700I GAANNNNTTC 4 cut(s) 672, 2328, 4898, 5077
AspS9I GGNCC 6 cut(s) 826, 3297, 3371, 4274, 4285, 4422
AsuC2I CCSGG 1 cut(s) 4904
AsuHPI GGTGA 8 cut(s) 146, 155, 643, 853, 983, 1622, 1911, 5073
AsuNHI GCTAGC 1 cut(s) 2090
AvaI CYCGRG 1 cut(s) 3122
AvaII GGWCC 5 cut(s) 3297, 3371, 4274, 4285, 4422
AxyI CCTNAGG 2 cut(s) 1667, 1730
BaeGI GKGCMC 2 cut(s) 219, 1526
BalI TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
BamHI GGATCC 2 cut(s) 1826, 3503
BanII GRGCYC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 3003, 3035
BbsI GAAGAC 8 cut(s) 1117, 2268, 2953, 3018, 3212, 3899, 4245, 4746
Bbv12I GWGCWC 3 cut(s) 219, 742, 1526
BbvCI CCTCAGC 1 cut(s) 4983
BbvI GCAGC 3 cut(s) 1329, 2571, 4266
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 6 cut(s) 3052, 3086, 3910, 3944, 4806, 4840
BciT130I CCWGG 1 cut(s) 4963
BciVI GTATCC 1 cut(s) 1229
BclI TGATCA 1 cut(s) 1615
BcnI CCSGG 1 cut(s) 4904
BfmI CTRYAG 3 cut(s) 119, 1115, 4922
BfrI CTTAAG 1 cut(s) 1199
BfuI GTATCC 1 cut(s) 1229
BglI GCCNNNNNGGC 1 cut(s) 965
BglII AGATCT 1 cut(s) 2590
BisI GCNGC 3 cut(s) 1343, 2585, 4255
BlsI GCNGC 3 cut(s) 1344, 2586, 4256
BmcAI AGTACT 3 cut(s) 4384, 4640, 5008
Bme1390I CCNGG 2 cut(s) 4904, 4963
Bme18I GGWCC 5 cut(s) 3297, 3371, 4274, 4285, 4422
BmeT110I CYCGRG 1 cut(s) 3122
BmgBI CACGTC 1 cut(s) 743
BmgT120I GGNCC 6 cut(s) 826, 3297, 3371, 4274, 4285, 4422
BmiI GGNNCC 8 cut(s) 107, 1828, 3298, 3299, 3505, 3978, 4423, 4424
BmrFI CCNGG 2 cut(s) 4904, 4963
BmrI ACTGGG 2 cut(s) 140, 1778
BmtI GCTAGC 1 cut(s) 2094
BmuI ACTGGG 2 cut(s) 140, 1778
BoxI GACNNNNGTC 1 cut(s) 2232
BpiI GAAGAC 8 cut(s) 1117, 2268, 2953, 3018, 3212, 3899, 4245, 4746
BplI GAGNNNNNCTC 8 cut(s) 2717, 2749, 3550, 3582, 4118, 4150, 4475, 4507
BpmI CTGGAG 2 cut(s) 1184, 3440
Bpu10I CCTNAGC 2 cut(s) 3203, 4983
BpuEI CTTGAG 9 cut(s) 95, 2719, 3281, 3374, 3554, 3734, 4264, 4893, 5086
BpuMI CCSGG 1 cut(s) 4904
BsaAI YACGTR 2 cut(s) 925, 4050
BsaI GGTCTC 1 cut(s) 3710
BsaJI CCNNGG 5 cut(s) 2230, 3548, 4656, 4962, 5084
BsaWI WCCGGW 5 cut(s) 1400, 2667, 3686, 4282, 4829
BsaXI ACNNNNNCTCC 4 cut(s) 1187, 1217, 2184, 2214
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 996, 2521
Bse118I RCCGGY 1 cut(s) 1039
Bse21I CCTNAGG 2 cut(s) 1667, 1730
Bse3DI GCAATG 5 cut(s) 1331, 2224, 2751, 3957, 4839
BseAI TCCGGA 2 cut(s) 2667, 4829
BseBI CCWGG 1 cut(s) 4963
BseDI CCNNGG 5 cut(s) 2230, 3548, 4656, 4962, 5084
BseLI CCNNNNNNNGG 3 cut(s) 433, 996, 2521
BseMI GCAATG 5 cut(s) 1331, 2224, 2751, 3957, 4839
BseRI GAGGAG 5 cut(s) 1183, 2977, 4952, 4955, 5037
BseSI GKGCMC 2 cut(s) 219, 1526
BseXI GCAGC 3 cut(s) 1329, 2571, 4266
BseYI CCCAGC 1 cut(s) 4852
BsgI GTGCAG 2 cut(s) 2631, 3071
BshFI GGCC 9 cut(s) 467, 828, 1498, 1702, 2823, 2942, 3899, 4084, 4661
BsiHKAI GWGCWC 3 cut(s) 219, 742, 1526
BsiHKCI CYCGRG 1 cut(s) 3122
BsiSI CCGG 7 cut(s) 1040, 1401, 2668, 3687, 4283, 4830, 4904
BslFI GGGAC 2 cut(s) 3310, 4435
BslI CCNNNNNNNGG 3 cut(s) 433, 996, 2521
BsmBI CGTCTC 2 cut(s) 3007, 4889
BsmFI GGGAC 2 cut(s) 3310, 4435
BsmI GAATGC 4 cut(s) 1093, 1410, 2094, 3712
BsnI GGCC 9 cut(s) 467, 828, 1498, 1702, 2823, 2942, 3899, 4084, 4661
Bso31I GGTCTC 1 cut(s) 3710
BsoBI CYCGRG 1 cut(s) 3122
Bsp1286I GDGCHC 4 cut(s) 219, 742, 778, 1526
Bsp13I TCCGGA 2 cut(s) 2667, 4829
Bsp19I CCATGG 1 cut(s) 2230
BspACI CCGC 6 cut(s) 1193, 1527, 4507, 4581, 4777, 4919
BspANI GGCC 9 cut(s) 467, 828, 1498, 1702, 2823, 2942, 3899, 4084, 4661
BspEI TCCGGA 2 cut(s) 2667, 4829
BspHI TCATGA 1 cut(s) 1618
BspLI GGNNCC 8 cut(s) 107, 1828, 3298, 3299, 3505, 3978, 4423, 4424
BspOI GCTAGC 1 cut(s) 2094
BspPI GGATC 7 cut(s) 56, 1686, 1821, 1834, 3498, 3511, 4455
BspQI GCTCTTC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 1199
BspTNI GGTCTC 1 cut(s) 3710
BsrDI GCAATG 5 cut(s) 1331, 2224, 2751, 3957, 4839
BsrFI RCCGGY 1 cut(s) 1039
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 5 cut(s) 2230, 3548, 4656, 4962, 5084
BssT1I CCWWGG 1 cut(s) 2230
Bst2UI CCWGG 1 cut(s) 4963
Bst6I CTCTTC 9 cut(s) 234, 426, 730, 1070, 1238, 1540, 2520, 2718, 3551
BstAFI CTTAAG 1 cut(s) 1199
BstAPI GCANNNNNTGC 2 cut(s) 1328, 1342
BstBAI YACGTR 2 cut(s) 925, 4050
BstC8I GCNNGC 8 cut(s) 168, 597, 2029, 2092, 2582, 3188, 4071, 4086
BstDSI CCRYGG 2 cut(s) 2230, 4656
BstNI CCWGG 1 cut(s) 4963
BstNSI RCATGY 4 cut(s) 170, 1398, 3171, 4073
BstPAI GACNNNNGTC 1 cut(s) 2232
BstSCI CCNGG 2 cut(s) 4902, 4961
BstSFI CTRYAG 3 cut(s) 119, 1115, 4922
BstSLI GKGCMC 2 cut(s) 219, 1526
BstV1I GCAGC 3 cut(s) 1329, 2571, 4266
BstV2I GAAGAC 8 cut(s) 1117, 2268, 2953, 3018, 3212, 3899, 4245, 4746
BstX2I RGATCY 5 cut(s) 1678, 1826, 2590, 3503, 4447
BstYI RGATCY 5 cut(s) 1678, 1826, 2590, 3503, 4447
Bsu36I CCTNAGG 2 cut(s) 1667, 1730
BsuI GTATCC 1 cut(s) 1229
BsuRI GGCC 9 cut(s) 467, 828, 1498, 1702, 2823, 2942, 3899, 4084, 4661
BtgI CCRYGG 2 cut(s) 2230, 4656
BtrI CACGTC 1 cut(s) 743
BtsI GCAGTG 1 cut(s) 2430
BtsIMutI CAGTG 8 cut(s) 1053, 1082, 1387, 2115, 2368, 2430, 2943, 3999
Cac8I GCNNGC 8 cut(s) 168, 597, 2029, 2092, 2582, 3188, 4071, 4086
CaiI CAGNNNCTG 2 cut(s) 1729, 2338
CciI TCATGA 1 cut(s) 1618
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 6 cut(s) 826, 3297, 3371, 4274, 4285, 4422
CseI GACGC 3 cut(s) 1109, 3023, 3879
CspCI CAANNNNNGTGG 2 cut(s) 3180, 3215
DraI TTTAAA 4 cut(s) 324, 1071, 4030, 4192
DrdI GACNNNNNNGTC 1 cut(s) 4952
DseDI GACNNNNNNGTC 1 cut(s) 4952
EaeI YGGCCR 5 cut(s) 1700, 2940, 3897, 4082, 4659
Eam1104I CTCTTC 9 cut(s) 234, 426, 730, 1070, 1238, 1540, 2520, 2718, 3551
EarI CTCTTC 9 cut(s) 234, 426, 730, 1070, 1238, 1540, 2520, 2718, 3551
EciI GGCGGA 1 cut(s) 1208
Eco130I CCWWGG 1 cut(s) 2230
Eco147I AGGCCT 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 778
Eco31I GGTCTC 1 cut(s) 3710
Eco32I GATATC 4 cut(s) 1390, 1917, 2505, 3397
Eco47I GGWCC 5 cut(s) 3297, 3371, 4274, 4285, 4422
Eco57I CTGAAG 9 cut(s) 468, 1610, 1724, 2280, 2343, 2483, 3066, 3893, 4279
Eco81I CCTNAGG 2 cut(s) 1667, 1730
Eco88I CYCGRG 1 cut(s) 3122
EcoO109I RGGNCCY 2 cut(s) 3297, 4422
EcoRI GAATTC 2 cut(s) 672, 3253
EcoRII CCWGG 1 cut(s) 4961
EcoRV GATATC 4 cut(s) 1390, 1917, 2505, 3397
EcoT14I CCWWGG 1 cut(s) 2230
EcoT22I ATGCAT 6 cut(s) 900, 1093, 1333, 1410, 4071, 4476
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 2230
Esp3I CGTCTC 2 cut(s) 3007, 4889
FalI AAGNNNNNCTT 2 cut(s) 2384, 2416
FaqI GGGAC 2 cut(s) 3310, 4435
FauI CCCGC 1 cut(s) 4514
FauNDI CATATG 2 cut(s) 1924, 4018
FbaI TGATCA 1 cut(s) 1615
FblI GTMKAC 3 cut(s) 301, 353, 1873
Fnu4HI GCNGC 3 cut(s) 1343, 2585, 4255
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 3 cut(s) 1343, 2585, 4255
GluI GCNGC 3 cut(s) 1343, 2585, 4255
GsaI CCCAGC 1 cut(s) 4856
GsuI CTGGAG 2 cut(s) 1184, 3440
HaeIII GGCC 9 cut(s) 467, 828, 1498, 1702, 2823, 2942, 3899, 4084, 4661
HapII CCGG 7 cut(s) 1040, 1401, 2668, 3687, 4283, 4830, 4904
HgaI GACGC 3 cut(s) 1109, 3023, 3879
HincII GTYRAC 5 cut(s) 128, 861, 2061, 2835, 3608
HindII GTYRAC 5 cut(s) 128, 861, 2061, 2835, 3608
HindIII AAGCTT 4 cut(s) 326, 3150, 4150, 4895
HpaI GTTAAC 1 cut(s) 2061
HpaII CCGG 7 cut(s) 1040, 1401, 2668, 3687, 4283, 4830, 4904
HphI GGTGA 8 cut(s) 146, 155, 643, 853, 983, 1622, 1911, 5073
Hpy99I CGWCG 2 cut(s) 747, 3895
HpyCH4IV ACGT 5 cut(s) 742, 924, 975, 2352, 4049
HpySE526I ACGT 5 cut(s) 742, 924, 975, 2352, 4049
KflI GGGWCCC 2 cut(s) 3297, 4422
Kpn2I TCCGGA 2 cut(s) 2667, 4829
Ksp22I TGATCA 1 cut(s) 1615
KspAI GTTAAC 1 cut(s) 2061
LguI GCTCTTC 1 cut(s) 730
LmnI GCTCC 8 cut(s) 924, 1195, 1904, 2205, 2964, 4832, 5031, 5050
Lsp1109I GCAGC 3 cut(s) 1329, 2571, 4266
MaeII ACGT 5 cut(s) 742, 924, 975, 2352, 4049
MfeI CAATTG 6 cut(s) 18, 1793, 1862, 2957, 3453, 4209
MflI RGATCY 5 cut(s) 1678, 1826, 2590, 3503, 4447
MhlI GDGCHC 4 cut(s) 219, 742, 778, 1526
MlsI TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
MluNI TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
MlyI GAGTC 6 cut(s) 133, 1861, 2010, 2726, 3473, 4754
MmeI TCCRAC 8 cut(s) 16, 694, 1164, 1656, 2106, 2227, 3268, 4425
Mox20I TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
Mph1103I ATGCAT 6 cut(s) 900, 1093, 1333, 1410, 4071, 4476
MroI TCCGGA 2 cut(s) 2667, 4829
MroXI GAANNNNTTC 4 cut(s) 672, 2328, 4898, 5077
MscI TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
MslI CAYNNNNRTG 4 cut(s) 3037, 3327, 3657, 4019
Msp20I TGGCCA 5 cut(s) 1702, 2942, 3899, 4084, 4661
MspA1I CMGCKG 1 cut(s) 2584
MspCI CTTAAG 1 cut(s) 1199
MspI CCGG 7 cut(s) 1040, 1401, 2668, 3687, 4283, 4830, 4904
MspR9I CCNGG 2 cut(s) 4904, 4963
MunI CAATTG 6 cut(s) 18, 1793, 1862, 2957, 3453, 4209
Mva1269I GAATGC 4 cut(s) 1093, 1410, 2094, 3712
MvaI CCWGG 1 cut(s) 4963
NciI CCSGG 1 cut(s) 4904
NcoI CCATGG 1 cut(s) 2230
NdeI CATATG 2 cut(s) 1924, 4018
NheI GCTAGC 1 cut(s) 2090
NlaIV GGNNCC 8 cut(s) 107, 1828, 3298, 3299, 3505, 3978, 4423, 4424
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 8 cut(s) 134, 841, 971, 1051, 2002, 2906, 3805, 4012
NsiI ATGCAT 6 cut(s) 900, 1093, 1333, 1410, 4071, 4476
NspI RCATGY 4 cut(s) 170, 1398, 3171, 4073
OliI CACNNNNGTG 1 cut(s) 4019
PaeI GCATGC 2 cut(s) 170, 4073
PaeR7I CTCGAG 1 cut(s) 3122
PagI TCATGA 1 cut(s) 1618
PceI AGGCCT 1 cut(s) 467
PciI ACATGT 1 cut(s) 1394
PciSI GCTCTTC 1 cut(s) 730
PctI GAATGC 4 cut(s) 1093, 1410, 2094, 3712
PdmI GAANNNNTTC 4 cut(s) 672, 2328, 4898, 5077
PflFI GACNNNGTC 1 cut(s) 977
PflMI CCANNNNNTGG 1 cut(s) 2521
PkrI GCNGC 3 cut(s) 1344, 2586, 4256
PleI GAGTC 6 cut(s) 132, 1861, 2009, 2726, 3473, 4753
PpsI GAGTC 6 cut(s) 132, 1861, 2009, 2726, 3473, 4753
Ppu21I YACGTR 2 cut(s) 925, 4050
PpuMI RGGWCCY 2 cut(s) 3297, 4422
PscI ACATGT 1 cut(s) 1394
PshAI GACNNNNGTC 1 cut(s) 2232
PshBI ATTAAT 1 cut(s) 2385
PsiI TTATAA 1 cut(s) 782
Psp5II RGGWCCY 2 cut(s) 3297, 4422
Psp6I CCWGG 1 cut(s) 4961
PspFI CCCAGC 1 cut(s) 4852
PspGI CCWGG 1 cut(s) 4961
PspN4I GGNNCC 8 cut(s) 107, 1828, 3298, 3299, 3505, 3978, 4423, 4424
PspPI GGNCC 6 cut(s) 826, 3297, 3371, 4274, 4285, 4422
PspPPI RGGWCCY 2 cut(s) 3297, 4422
PstNI CAGNNNCTG 2 cut(s) 1729, 2338
PsuI RGATCY 5 cut(s) 1678, 1826, 2590, 3503, 4447
PsyI GACNNNGTC 1 cut(s) 977
PvuII CAGCTG 1 cut(s) 2584
RseI CAYNNNNRTG 4 cut(s) 3037, 3327, 3657, 4019
SapI GCTCTTC 1 cut(s) 730
SatI GCNGC 3 cut(s) 1343, 2585, 4255
Sau96I GGNCC 6 cut(s) 826, 3297, 3371, 4274, 4285, 4422
ScaI AGTACT 3 cut(s) 4384, 4640, 5008
SchI GAGTC 6 cut(s) 133, 1861, 2010, 2726, 3473, 4754
ScrFI CCNGG 2 cut(s) 4904, 4963
SduI GDGCHC 4 cut(s) 219, 742, 778, 1526
SfcI CTRYAG 3 cut(s) 119, 1115, 4922
Sfr274I CTCGAG 1 cut(s) 3122
SinI GGWCC 5 cut(s) 3297, 3371, 4274, 4285, 4422
SlaI CTCGAG 1 cut(s) 3122
SmiMI CAYNNNNRTG 4 cut(s) 3037, 3327, 3657, 4019
SphI GCATGC 2 cut(s) 170, 4073
SseBI AGGCCT 1 cut(s) 467
SsiI CCGC 6 cut(s) 1193, 1527, 4507, 4581, 4777, 4919
SspI AATATT 2 cut(s) 855, 2302
StuI AGGCCT 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 4902, 4961
StyI CCWWGG 1 cut(s) 2230
TaiI ACGT 5 cut(s) 745, 927, 978, 2355, 4052
TaqI TCGA 7 cut(s) 1314, 3005, 3123, 3815, 4365, 4530, 4956
TaqII GACCGA 1 cut(s) 1638
TscAI CASTG 8 cut(s) 1060, 1089, 1387, 2122, 2368, 2430, 2943, 3999
TseFI GTSAC 8 cut(s) 134, 841, 971, 1051, 2002, 2906, 3805, 4012
TseI GCWGC 3 cut(s) 1342, 2584, 4254
Tsp45I GTSAC 8 cut(s) 134, 841, 971, 1051, 2002, 2906, 3805, 4012
TspGWI ACGGA 5 cut(s) 1012, 2919, 3496, 4644, 4645
TspRI CASTG 8 cut(s) 1060, 1089, 1387, 2122, 2368, 2430, 2943, 3999
Tth111I GACNNNGTC 1 cut(s) 977
Van91I CCANNNNNTGG 1 cut(s) 2521
Vha464I CTTAAG 1 cut(s) 1199
VneI GTGCAC 2 cut(s) 215, 1522
VpaK11BI GGWCC 5 cut(s) 3297, 3371, 4274, 4285, 4422
VspI ATTAAT 1 cut(s) 2385
XbaI TCTAGA 4 cut(s) 866, 2236, 2863, 2881
XceI RCATGY 4 cut(s) 170, 1398, 3171, 4073
XcmI CCANNNNNNNNNTGG 1 cut(s) 2144
XhoI CTCGAG 1 cut(s) 3122
XmiI GTMKAC 3 cut(s) 301, 353, 1873
XmnI GAANNNNTTC 4 cut(s) 672, 2328, 4898, 5077
ZrmI AGTACT 3 cut(s) 4384, 4640, 5008
Zsp2I ATGCAT 6 cut(s) 900, 1093, 1333, 1410, 4071, 4476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.