disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ATPase_2 | PF01637 | 192 - 302 | 1.3e-07 | ATPase domain predominantly from Archaea |
| AAA_16 | PF13191 | 192 - 266 | 1.1e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 195 - 356 | 6.6e-29 | NB-ARC domain |
| AAA_22 | PF13401 | 208 - 298 | 2e-06 | AAA domain |
| LRR_14 | PF23598 | 577 - 676 | 1.7e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 76 |
| Acc65I | GGTACC | 1 cut(s) | 1319 |
| AccB1I | GGYRCC | 1 cut(s) | 1319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1402 |
| AccI | GTMKAC | 1 cut(s) | 1427 |
| AccIII | TCCGGA | 1 cut(s) | 2702 |
| AciI | CCGC | 2 cut(s) | 522, 1819 |
| AclWI | GGATC | 3 cut(s) | 1076, 2172, 2713 |
| AcoI | YGGCCR | 2 cut(s) | 1583, 2096 |
| AcsI | RAATTY | 6 cut(s) | 148, 275, 966, 1450, 2397, 2652 |
| AcuI | CTGAAG | 6 cut(s) | 410, 570, 2000, 2217, 2443, 2513 |
| AcyI | GRCGYC | 2 cut(s) | 73, 85 |
| AfaI | GTAC | 7 cut(s) | 53, 1321, 1509, 2429, 2434, 2445, 2781 |
| AfeI | AGCGCT | 1 cut(s) | 1162 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1402, 2392 |
| AflII | CTTAAG | 2 cut(s) | 1295, 1445 |
| AflIII | ACRYGT | 2 cut(s) | 1484, 1546 |
| AhlI | ACTAGT | 1 cut(s) | 670 |
| AjiI | CACGTC | 1 cut(s) | 1549 |
| AjnI | CCWGG | 1 cut(s) | 1622 |
| AleI | CACNNNNGTG | 1 cut(s) | 671 |
| Alw26I | GTCTC | 4 cut(s) | 401, 415, 486, 542 |
| AlwI | GGATC | 3 cut(s) | 1076, 2172, 2713 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2027 |
| Ama87I | CYCGRG | 1 cut(s) | 920 |
| Aor13HI | TCCGGA | 1 cut(s) | 2702 |
| Aor51HI | AGCGCT | 1 cut(s) | 1162 |
| AoxI | GGCC | 6 cut(s) | 334, 1583, 2096, 2205, 2344, 2713 |
| ApaI | GGGCCC | 1 cut(s) | 2348 |
| ApeKI | GCWGC | 3 cut(s) | 1291, 2759, 2762 |
| ApoI | RAATTY | 6 cut(s) | 148, 275, 966, 1450, 2397, 2652 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 762, 1686, 2262 |
| Asp718I | GGTACC | 1 cut(s) | 1319 |
| AspLEI | GCGC | 1 cut(s) | 1163 |
| AspS9I | GGNCC | 5 cut(s) | 1626, 2344, 2345, 2634, 2714 |
| AsuHPI | GGTGA | 3 cut(s) | 218, 1079, 2758 |
| AsuII | TTCGAA | 1 cut(s) | 970 |
| AvaI | CYCGRG | 1 cut(s) | 920 |
| AvaII | GGWCC | 2 cut(s) | 1626, 2634 |
| BaeGI | GKGCMC | 2 cut(s) | 2348, 2497 |
| BalI | TGGCCA | 1 cut(s) | 1585 |
| BanI | GGYRCC | 1 cut(s) | 1319 |
| BanII | GRGCYC | 2 cut(s) | 2348, 2572 |
| BbsI | GAAGAC | 9 cut(s) | 558, 875, 920, 1640, 1722, 1902, 1947, 2515, 2792 |
| BbvCI | CCTCAGC | 1 cut(s) | 1935 |
| BbvI | GCAGC | 3 cut(s) | 1303, 2746, 2749 |
| BccI | CCATC | 5 cut(s) | 408, 1463, 1556, 1694, 2911 |
| BciT130I | CCWGG | 1 cut(s) | 1624 |
| BcoDI | GTCTC | 4 cut(s) | 401, 415, 486, 542 |
| BcuI | ACTAGT | 1 cut(s) | 670 |
| BfoI | RGCGCY | 1 cut(s) | 1164 |
| BfrI | CTTAAG | 2 cut(s) | 1295, 1445 |
| BisI | GCNGC | 3 cut(s) | 1292, 2760, 2763 |
| BlsI | GCNGC | 3 cut(s) | 1293, 2761, 2764 |
| Bme1390I | CCNGG | 1 cut(s) | 1624 |
| Bme18I | GGWCC | 2 cut(s) | 1626, 2634 |
| BmeT110I | CYCGRG | 1 cut(s) | 920 |
| BmgBI | CACGTC | 1 cut(s) | 1549 |
| BmgT120I | GGNCC | 5 cut(s) | 1626, 2344, 2345, 2634, 2714 |
| BmiI | GGNNCC | 5 cut(s) | 1321, 2346, 2571, 2635, 2636 |
| BmrFI | CCNGG | 1 cut(s) | 1624 |
| BmrI | ACTGGG | 4 cut(s) | 612, 1638, 2342, 2435 |
| BmsI | GCATC | 5 cut(s) | 709, 1694, 2014, 2692, 2851 |
| BmuI | ACTGGG | 4 cut(s) | 612, 1638, 2342, 2435 |
| BpiI | GAAGAC | 9 cut(s) | 558, 875, 920, 1640, 1722, 1902, 1947, 2515, 2792 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1261, 1293 |
| BpmI | CTGGAG | 1 cut(s) | 324 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1674, 1845, 1935 |
| Bpu14I | TTCGAA | 1 cut(s) | 970 |
| BpuEI | CTTGAG | 4 cut(s) | 123, 1092, 1921, 2752 |
| BsaHI | GRCGYC | 2 cut(s) | 73, 85 |
| BsaJI | CCNNGG | 3 cut(s) | 1661, 1773, 2406 |
| BsaWI | WCCGGW | 1 cut(s) | 2702 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2036, 2066 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1402, 2392 |
| Bse1I | ACTGG | 6 cut(s) | 307, 618, 1644, 2348, 2441, 2893 |
| BseAI | TCCGGA | 1 cut(s) | 2702 |
| BseBI | CCWGG | 1 cut(s) | 1624 |
| BseDI | CCNNGG | 3 cut(s) | 1661, 1773, 2406 |
| BseGI | GGATG | 7 cut(s) | 229, 334, 478, 607, 892, 1709, 2435 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1402, 2392 |
| BseMII | CTCAG | 6 cut(s) | 266, 834, 1193, 1665, 1836, 1926 |
| BseNI | ACTGG | 6 cut(s) | 307, 618, 1644, 2348, 2441, 2893 |
| BseRI | GAGGAG | 1 cut(s) | 2562 |
| BseSI | GKGCMC | 2 cut(s) | 2348, 2497 |
| BseXI | GCAGC | 3 cut(s) | 1303, 2746, 2749 |
| BseYI | CCCAGC | 1 cut(s) | 2505 |
| BsgI | GTGCAG | 3 cut(s) | 1630, 2252, 2738 |
| BshFI | GGCC | 6 cut(s) | 336, 1585, 2098, 2207, 2346, 2715 |
| BshNI | GGYRCC | 1 cut(s) | 1319 |
| BsiHKCI | CYCGRG | 1 cut(s) | 920 |
| BsiSI | CCGG | 1 cut(s) | 2703 |
| BslFI | GGGAC | 3 cut(s) | 96, 600, 2647 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1402, 2392 |
| BsmAI | GTCTC | 4 cut(s) | 401, 415, 486, 542 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmFI | GGGAC | 3 cut(s) | 96, 600, 2647 |
| BsmI | GAATGC | 2 cut(s) | 1500, 1966 |
| BsnI | GGCC | 6 cut(s) | 336, 1585, 2098, 2207, 2346, 2715 |
| BsoBI | CYCGRG | 1 cut(s) | 920 |
| Bsp119I | TTCGAA | 1 cut(s) | 970 |
| Bsp120I | GGGCCC | 1 cut(s) | 2344 |
| Bsp1286I | GDGCHC | 3 cut(s) | 2348, 2497, 2572 |
| Bsp13I | TCCGGA | 1 cut(s) | 2702 |
| Bsp1407I | TGTACA | 1 cut(s) | 1507 |
| Bsp143I | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| BspACI | CCGC | 2 cut(s) | 522, 1819 |
| BspANI | GGCC | 6 cut(s) | 336, 1585, 2098, 2207, 2346, 2715 |
| BspCNI | CTCAG | 6 cut(s) | 265, 833, 1194, 1666, 1837, 1927 |
| BspEI | TCCGGA | 1 cut(s) | 2702 |
| BspHI | TCATGA | 2 cut(s) | 258, 1222 |
| BspLI | GGNNCC | 5 cut(s) | 1321, 2346, 2571, 2635, 2636 |
| BspPI | GGATC | 3 cut(s) | 1076, 2172, 2713 |
| BspQI | GCTCTTC | 2 cut(s) | 342, 820 |
| BspT104I | TTCGAA | 1 cut(s) | 970 |
| BspT107I | GGYRCC | 1 cut(s) | 1319 |
| BspTI | CTTAAG | 2 cut(s) | 1295, 1445 |
| BsrGI | TGTACA | 1 cut(s) | 1507 |
| BsrI | ACTGG | 6 cut(s) | 307, 618, 1644, 2348, 2441, 2893 |
| BssECI | CCNNGG | 3 cut(s) | 1661, 1773, 2406 |
| BssMI | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| BssNAI | GTATAC | 1 cut(s) | 1428 |
| BssNI | GRCGYC | 2 cut(s) | 73, 85 |
| BssT1I | CCWWGG | 2 cut(s) | 1661, 1773 |
| Bst1107I | GTATAC | 1 cut(s) | 1428 |
| Bst2UI | CCWGG | 1 cut(s) | 1624 |
| Bst4CI | ACNGT | 7 cut(s) | 58, 515, 1153, 1402, 1916, 2432, 2606 |
| Bst6I | CTCTTC | 4 cut(s) | 196, 342, 484, 820 |
| BstACI | GRCGYC | 2 cut(s) | 73, 85 |
| BstAFI | CTTAAG | 2 cut(s) | 1295, 1445 |
| BstAUI | TGTACA | 1 cut(s) | 1507 |
| BstBI | TTCGAA | 1 cut(s) | 970 |
| BstC8I | GCNNGC | 4 cut(s) | 1159, 2511, 2753, 2757 |
| BstDSI | CCRYGG | 1 cut(s) | 2406 |
| BstF5I | GGATG | 7 cut(s) | 229, 334, 478, 607, 892, 1709, 2435 |
| BstH2I | RGCGCY | 1 cut(s) | 1164 |
| BstHHI | GCGC | 1 cut(s) | 1163 |
| BstKTI | GATC | 9 cut(s) | 258, 1084, 1504, 1543, 1591, 2143, 2167, 2305, 2708 |
| BstMAI | GTCTC | 4 cut(s) | 401, 415, 486, 542 |
| BstMBI | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1297, 1418 |
| BstNI | CCWGG | 1 cut(s) | 1624 |
| BstNSI | RCATGY | 2 cut(s) | 1488, 2627 |
| BstSCI | CCNGG | 1 cut(s) | 1622 |
| BstSLI | GKGCMC | 2 cut(s) | 2348, 2497 |
| BstV1I | GCAGC | 3 cut(s) | 1303, 2746, 2749 |
| BstV2I | GAAGAC | 9 cut(s) | 558, 875, 920, 1640, 1722, 1902, 1947, 2515, 2792 |
| BstX2I | RGATCY | 1 cut(s) | 1081 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 302, 673 |
| BstYI | RGATCY | 1 cut(s) | 1081 |
| BstZ17I | GTATAC | 1 cut(s) | 1428 |
| BsuRI | GGCC | 6 cut(s) | 336, 1585, 2098, 2207, 2346, 2715 |
| BtgI | CCRYGG | 1 cut(s) | 2406 |
| BtrI | CACGTC | 1 cut(s) | 1549 |
| BtsCI | GGATG | 7 cut(s) | 229, 334, 478, 607, 892, 1709, 2435 |
| BtsIMutI | CAGTG | 4 cut(s) | 520, 625, 2599, 2808 |
| Cac8I | GCNNGC | 4 cut(s) | 1159, 2511, 2753, 2757 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2027 |
| CciI | TCATGA | 2 cut(s) | 258, 1222 |
| CfoI | GCGC | 1 cut(s) | 1163 |
| Cfr13I | GGNCC | 5 cut(s) | 1626, 2344, 2345, 2634, 2714 |
| CseI | GACGC | 4 cut(s) | 93, 145, 383, 2820 |
| Csp6I | GTAC | 7 cut(s) | 52, 1320, 1508, 2428, 2433, 2444, 2780 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 441, 476, 1105, 1140, 2028, 2063 |
| CviQI | GTAC | 7 cut(s) | 52, 1320, 1508, 2428, 2433, 2444, 2780 |
| DpnI | GATC | 9 cut(s) | 257, 1083, 1503, 1542, 1590, 2142, 2166, 2304, 2707 |
| DpnII | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| DraI | TTTAAA | 3 cut(s) | 1390, 1603, 2658 |
| EaeI | YGGCCR | 2 cut(s) | 1583, 2096 |
| Eam1104I | CTCTTC | 4 cut(s) | 196, 342, 484, 820 |
| EarI | CTCTTC | 4 cut(s) | 196, 342, 484, 820 |
| Eco130I | CCWWGG | 2 cut(s) | 1661, 1773 |
| Eco24I | GRGCYC | 2 cut(s) | 2348, 2572 |
| Eco47I | GGWCC | 2 cut(s) | 1626, 2634 |
| Eco47III | AGCGCT | 1 cut(s) | 1162 |
| Eco57I | CTGAAG | 6 cut(s) | 410, 570, 2000, 2217, 2443, 2513 |
| Eco88I | CYCGRG | 1 cut(s) | 920 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2634 |
| EcoRI | GAATTC | 3 cut(s) | 275, 966, 1450 |
| EcoRII | CCWGG | 1 cut(s) | 1622 |
| EcoT14I | CCWWGG | 2 cut(s) | 1661, 1773 |
| EcoT22I | ATGCAT | 1 cut(s) | 1500 |
| EcoT38I | GRGCYC | 2 cut(s) | 2348, 2572 |
| ErhI | CCWWGG | 2 cut(s) | 1661, 1773 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2345, 2377 |
| FaqI | GGGAC | 3 cut(s) | 96, 600, 2647 |
| FauI | CCCGC | 1 cut(s) | 529 |
| FblI | GTMKAC | 1 cut(s) | 1427 |
| Fnu4HI | GCNGC | 3 cut(s) | 1292, 2760, 2763 |
| FokI | GGATG | 7 cut(s) | 236, 341, 485, 614, 899, 1716, 2422 |
| FriOI | GRGCYC | 2 cut(s) | 2348, 2572 |
| Fsp4HI | GCNGC | 3 cut(s) | 1292, 2760, 2763 |
| GlaI | GCGC | 1 cut(s) | 1162 |
| GluI | GCNGC | 3 cut(s) | 1292, 2760, 2763 |
| GsaI | CCCAGC | 1 cut(s) | 2509 |
| GsuI | CTGGAG | 1 cut(s) | 324 |
| HaeII | RGCGCY | 1 cut(s) | 1164 |
| HaeIII | GGCC | 6 cut(s) | 336, 1585, 2098, 2207, 2346, 2715 |
| HapII | CCGG | 1 cut(s) | 2703 |
| HgaI | GACGC | 4 cut(s) | 93, 145, 383, 2820 |
| HhaI | GCGC | 1 cut(s) | 1163 |
| Hin1I | GRCGYC | 2 cut(s) | 73, 85 |
| Hin6I | GCGC | 1 cut(s) | 1161 |
| HinP1I | GCGC | 1 cut(s) | 1161 |
| HincII | GTYRAC | 2 cut(s) | 450, 907 |
| HindII | GTYRAC | 2 cut(s) | 450, 907 |
| HindIII | AAGCTT | 1 cut(s) | 1248 |
| HpaII | CCGG | 1 cut(s) | 2703 |
| HphI | GGTGA | 3 cut(s) | 218, 1079, 2758 |
| Hpy166II | GTNNAC | 5 cut(s) | 54, 450, 907, 1428, 2410 |
| Hpy188I | TCNGA | 9 cut(s) | 255, 420, 988, 1493, 1837, 2164, 2197, 2532, 2870 |
| Hpy8I | GTNNAC | 5 cut(s) | 54, 450, 907, 1428, 2410 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyCH4III | ACNGT | 7 cut(s) | 58, 515, 1153, 1402, 1916, 2432, 2606 |
| HpyCH4IV | ACGT | 6 cut(s) | 73, 376, 1548, 1709, 2415, 2516 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1297, 1418 |
| HpySE526I | ACGT | 6 cut(s) | 73, 376, 1548, 1709, 2415, 2516 |
| Hsp92I | GRCGYC | 2 cut(s) | 73, 85 |
| HspAI | GCGC | 1 cut(s) | 1161 |
| KflI | GGGWCCC | 1 cut(s) | 2634 |
| Kpn2I | TCCGGA | 1 cut(s) | 2702 |
| KpnI | GGTACC | 1 cut(s) | 1323 |
| Kzo9I | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| LguI | GCTCTTC | 2 cut(s) | 342, 820 |
| LmnI | GCTCC | 1 cut(s) | 2575 |
| Lsp1109I | GCAGC | 3 cut(s) | 1303, 2746, 2749 |
| LweI | GCATC | 5 cut(s) | 709, 1694, 2014, 2692, 2851 |
| MaeII | ACGT | 6 cut(s) | 73, 376, 1548, 1709, 2415, 2516 |
| MaeIII | GTNAC | 4 cut(s) | 23, 694, 1147, 1271 |
| MalI | GATC | 9 cut(s) | 257, 1083, 1503, 1542, 1590, 2142, 2166, 2304, 2707 |
| MboI | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| MfeI | CAATTG | 3 cut(s) | 18, 1280, 2367 |
| MflI | RGATCY | 1 cut(s) | 1081 |
| MhlI | GDGCHC | 3 cut(s) | 2348, 2497, 2572 |
| MlsI | TGGCCA | 1 cut(s) | 1585 |
| MluNI | TGGCCA | 1 cut(s) | 1585 |
| MlyI | GAGTC | 6 cut(s) | 130, 865, 910, 1804, 2348, 2462 |
| MmeI | TCCRAC | 4 cut(s) | 16, 1692, 1711, 1815 |
| Mox20I | TGGCCA | 1 cut(s) | 1585 |
| Mph1103I | ATGCAT | 1 cut(s) | 1500 |
| MroI | TCCGGA | 1 cut(s) | 2702 |
| MroXI | GAANNNNTTC | 3 cut(s) | 762, 1686, 2262 |
| MscI | TGGCCA | 1 cut(s) | 1585 |
| MslI | CAYNNNNRTG | 3 cut(s) | 222, 635, 671 |
| Msp20I | TGGCCA | 1 cut(s) | 1585 |
| MspCI | CTTAAG | 2 cut(s) | 1295, 1445 |
| MspI | CCGG | 1 cut(s) | 2703 |
| MspR9I | CCNGG | 1 cut(s) | 1624 |
| MunI | CAATTG | 3 cut(s) | 18, 1280, 2367 |
| Mva1269I | GAATGC | 2 cut(s) | 1500, 1966 |
| MvaI | CCWGG | 1 cut(s) | 1624 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1297, 1418 |
| NdeII | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| NlaIV | GGNNCC | 5 cut(s) | 1321, 2346, 2571, 2635, 2636 |
| NmeAIII | GCCGAG | 1 cut(s) | 73 |
| NmuCI | GTSAC | 1 cut(s) | 1147 |
| NsiI | ATGCAT | 1 cut(s) | 1500 |
| NspI | RCATGY | 2 cut(s) | 1488, 2627 |
| NspV | TTCGAA | 1 cut(s) | 970 |
| OliI | CACNNNNGTG | 1 cut(s) | 671 |
| PagI | TCATGA | 2 cut(s) | 258, 1222 |
| PciI | ACATGT | 1 cut(s) | 1484 |
| PciSI | GCTCTTC | 2 cut(s) | 342, 820 |
| PctI | GAATGC | 2 cut(s) | 1500, 1966 |
| PdmI | GAANNNNTTC | 3 cut(s) | 762, 1686, 2262 |
| PfeI | GAWTC | 4 cut(s) | 118, 569, 1595, 2378 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1402 |
| PkrI | GCNGC | 3 cut(s) | 1293, 2761, 2764 |
| PleI | GAGTC | 6 cut(s) | 130, 865, 910, 1804, 2347, 2461 |
| PpsI | GAGTC | 6 cut(s) | 130, 865, 910, 1804, 2347, 2461 |
| PpuMI | RGGWCCY | 1 cut(s) | 2634 |
| PscI | ACATGT | 1 cut(s) | 1484 |
| Psp5II | RGGWCCY | 1 cut(s) | 2634 |
| Psp6I | CCWGG | 1 cut(s) | 1622 |
| PspFI | CCCAGC | 1 cut(s) | 2505 |
| PspGI | CCWGG | 1 cut(s) | 1622 |
| PspN4I | GGNNCC | 5 cut(s) | 1321, 2346, 2571, 2635, 2636 |
| PspOMI | GGGCCC | 1 cut(s) | 2344 |
| PspPI | GGNCC | 5 cut(s) | 1626, 2344, 2345, 2634, 2714 |
| PspPPI | RGGWCCY | 1 cut(s) | 2634 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2027 |
| PsuI | RGATCY | 1 cut(s) | 1081 |
| RsaI | GTAC | 7 cut(s) | 53, 1321, 1509, 2429, 2434, 2445, 2781 |
| RsaNI | GTAC | 7 cut(s) | 52, 1320, 1508, 2428, 2433, 2444, 2780 |
| RseI | CAYNNNNRTG | 3 cut(s) | 222, 635, 671 |
| SapI | GCTCTTC | 2 cut(s) | 342, 820 |
| SatI | GCNGC | 3 cut(s) | 1292, 2760, 2763 |
| Sau3AI | GATC | 9 cut(s) | 255, 1081, 1501, 1540, 1588, 2140, 2164, 2302, 2705 |
| Sau96I | GGNCC | 5 cut(s) | 1626, 2344, 2345, 2634, 2714 |
| SchI | GAGTC | 6 cut(s) | 130, 865, 910, 1804, 2348, 2462 |
| ScrFI | CCNGG | 1 cut(s) | 1624 |
| SduI | GDGCHC | 3 cut(s) | 2348, 2497, 2572 |
| SfaNI | GCATC | 5 cut(s) | 709, 1694, 2014, 2692, 2851 |
| SfuI | TTCGAA | 1 cut(s) | 970 |
| SinI | GGWCC | 2 cut(s) | 1626, 2634 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 222, 635, 671 |
| SmlI | CTYRAG | 6 cut(s) | 138, 1107, 1295, 1445, 1900, 2767 |
| SmoI | CTYRAG | 6 cut(s) | 138, 1107, 1295, 1445, 1900, 2767 |
| SpeI | ACTAGT | 1 cut(s) | 670 |
| SsiI | CCGC | 2 cut(s) | 522, 1819 |
| SspI | AATATT | 2 cut(s) | 2545, 2586 |
| StyD4I | CCNGG | 1 cut(s) | 1622 |
| StyI | CCWWGG | 2 cut(s) | 1661, 1773 |
| TaaI | ACNGT | 7 cut(s) | 58, 515, 1153, 1402, 1916, 2432, 2606 |
| TaiI | ACGT | 6 cut(s) | 76, 379, 1551, 1712, 2418, 2519 |
| TaqI | TCGA | 5 cut(s) | 240, 970, 1414, 1893, 2139 |
| TatI | WGTACW | 3 cut(s) | 51, 1507, 2779 |
| TfiI | GAWTC | 4 cut(s) | 118, 569, 1595, 2378 |
| TscAI | CASTG | 4 cut(s) | 520, 625, 2599, 2808 |
| TseFI | GTSAC | 1 cut(s) | 1147 |
| TseI | GCWGC | 3 cut(s) | 1291, 2759, 2762 |
| Tsp45I | GTSAC | 1 cut(s) | 1147 |
| TspGWI | ACGGA | 1 cut(s) | 2395 |
| TspRI | CASTG | 4 cut(s) | 520, 625, 2599, 2808 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1402 |
| Vha464I | CTTAAG | 2 cut(s) | 1295, 1445 |
| VpaK11BI | GGWCC | 2 cut(s) | 1626, 2634 |
| XapI | RAATTY | 6 cut(s) | 148, 275, 966, 1450, 2397, 2652 |
| XbaI | TCTAGA | 2 cut(s) | 962, 2740 |
| XceI | RCATGY | 2 cut(s) | 1488, 2627 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1559, 2081 |
| XmiI | GTMKAC | 1 cut(s) | 1427 |
| XmnI | GAANNNNTTC | 3 cut(s) | 762, 1686, 2262 |
| ZraI | GACGTC | 1 cut(s) | 74 |
| Zsp2I | ATGCAT | 1 cut(s) | 1500 |