Rmu_sc0003582.1_g000009

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003582.1
OG0000042
Physical Location & Seq
Forward (+)
37609 .. 45081
7473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003582.1_g000009.1.cds

Sequence Viewer

Length: 4119 bp
atggagattcttgctgcaattgccggaaaacttgccgagttcacaattgaaccaattggacgccaagtgggttatttagctcactacaaacgcaactatcaaaatctgcagagcaaggttgaagacttgcgtgctgccagagacgaggttcaacataaggttgatgaagttgagagcagcggtaagagaacggagactagtgtcagaaactggaagtcaaaagtggatgcaatcatcactgacgcagatacattcttgaacgatggtcgccatgcacagaccgagtgccttcatggtttttgtcctcatttggtgctctgttatcagctaagcaagaaatcaacaaaattggtgaaggaaattgttgagctctatggaaaaaaggagttttccaattttgcatttaatgttcgtccacaagaggtatttctcttatctaccggacattacagtacatttgattcaaggaattcaattgtgatgagagtcatggatgaactgagaaatcctaatacagaaatgattctggtatatggaatcggtggagtagggaagaccacacttgtggaagaagttcttaggaaagctaaggatgacaacttatttgatgatgtggtgatggtgagagatgttaaagagaatctagaccttgaaaaaatccaaaaagaaattgccatgaagttgggtatgagcattgacgaaaatcatactctagctcaaagagcgccccttctaggtgataggataaaacagaagaggactcttgtagttttagacgatgtttgggaagaaattgatctactggctgtcggagttccccgcctggctacttgtaaagtagtgctgacatgtagaagtcgaaaggaattgtccaaggataggcgtacacaaacagatatttcactggatgttttaaatgaagaggaagcctggagtctatttgagaagatggctggtaatgttgtcaaagatagccgcatacgaagcatagcaattgaaatagccaaaaaatgtggaggtttgccggtcttgattgttactgttgcaagggctctaaaagacagaaacaagttgcaagtatggaaagacacattgagacgccttagaggctttgacaaccaagaattgacggaaaaagcatactcggctctggagtggagttatgatcaattggaagataaagagcttaagccgttgttcttgctttgtgggattattgtagtgaagaaccatattaattcggcagacttgttgaaatatggttttggtttgggtttgattaaaaatgtcgatacaatagaagaagcacgagatgcattggttacacaaattgaaaagcttaaagattcttgcttgttgctggacagtgatatcagtatgcatgttagaatgcatgatcttgtatgtgaggttgctacacggattgcatccagagatcaacatgtcttatcagttggatatggaggtgaactaaaagaatggcctgataaagatttctttgaaaggtgcagtaagatgtctttaaaatccagcaatattcccatgctttctgaagtaccatggaaatgcccgaaactagagatgtttcatttgcatagaacagacctcggtgctgcatcggtggaattcccttccaacttttttggtgaaatgttgaaactgaaagtgttgggtttaactagagtgtatacggtgtcactaccttcatctcttcagttcttaaagaatgttcagacgttgtgtttagaaggatgcctgctgaaggaagagaatcaagagatagctctggttggacatctatgtaacttggaggttcttagctttgcgcggtccaacattagacggctacccaaagaaatagggcaattgattcgattgagatggttggatttgagtgattgtgtcagacttgaagtgatttcacctggtgttatttcacggttggaaagactagaagacttagcactgagaaacgtctttctcaaatgggaggctgaaaggggaggaagtaatgctagtcttttagagctgaaagacttgtctcaactaactgcattggacatacatattgaagatgcaaaaattcttccatcaaacttgttctccagtaagttggtaagataccaaatatatattggcaatgtttggaagcacgaatatgaaagcatgcctatggctaaaacgaacctcaacacgctaaaactgaagctcgctcccagcgatgaattggaccatggtatcaaaacattgttgaagagatctgaagatttgtcattggatgaaacagagagtgttaatagtattgtccgtcaattacatgttgaagattttcagcaactgatacacctccgtctccaaaacaatgttgatttcacctatatcattaataggaaggttgtgttccccaacttaacaaccttgagcatatgtagctgtgaccatctaagtttcttgttctcattttctatggctaaaagtttggtggagctcaaacatcttgaagtatccagttgtgaaataatggaagagatagtatcagcaagagatcaatccaacggagaaaatatcgatatcatgttttgtaagttggaaagtctaatactgaataaactcccaaacatcactagattctgtactgaattttctcccgtgacgaaatttgatacggaactggaggcatccatctttgatcctacgaatagtaaaaaacttaatgtcgagaatgggactgctgtacgagcatgtctttttgacgcacaggtaaaatttccgagcttggagagactgaaaatcaatggggtcgggaagttgcacacactatggaacaataaatttgctgatcaagactctttttgccaactcaaagaagttgaagtttcaaattgcaacagtctgaaaaagatctttccagtctcagtagccagacgtctccaaaagttacattcgctggatgtgaaagagtgtgatgaagtggaggaaatcattactggtgaactaggactagaaacagagtctcctcatttagtgttcccaaaagtaacacgtgtggaatttttcaatctgcccaaaatgagtagattctatcctgggattattgcttccaagtggccgttactcaaacaactaagcatttgtggatgtgggaaagtgaagatgtttgccgcagaacttccaatttcttcagaaagacatgagccgaaccctctaattgaacaatctctctttctaattgacaaggattcattccccaatttagaatacttgcagctacaagttgcgggtgagatttggtacggtccatcatcatccccagcacagttctttcccaaattaaaaagtatttgtttttacgagtgggcacggttgtccaagcaagccgcaatacatttccttgagaaattacccaatcttgaggagatacaagtgaggtgctttgattccacggaaatatttgtgaatgaagaaattaatggcggtgaggtgatacatgcagtaaaaactttgagggtccatttgatgtacaagctcttgcaattagggaatgggaactctcaaacagcgggcccacttttcccaaacttggtcactcttgaggtgcattggtgtcacatgttaaagagtgtagagtcatccgcaatatccttccgcaatctaacaactctggaagtagatcattgtgatggattggaatacttgacaagtcattccgtagctaagagcttaatgcaactgacaacactggaagtgctttattgtgaaagcctgagagcaattataggggcaagcaacgaagatgatcatgatacaggagcaacttgtgagattgctttcacccggttgcaacatttgtcactttattttctcccagaactgcaaggcttttgctcgggaaattgcattgtcagactcccatcctcaacagagttagatgtcagttactgcccgattgagttgaagatttcttctgaaggggtcctgctcagtaatcgaaatccagaaagagtacaaatagcaaaaccagaaatagcggaggaggtagatgataatggtgacggagaaaaagaaaaagatgaggatgttggcacgagtcgccaagacattgaagatagacaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1372

Amino Acids

155.82

Weight (kDa)

5.63

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2929
AccI GTMKAC 1 cut(s) 1688
AccII CGCG 1 cut(s) 1828
AclWI GGATC 1 cut(s) 2684
AcoI YGGCCR 1 cut(s) 3107
AcsI RAATTY 8 cut(s) 469, 1625, 2082, 2639, 2657, 2765, 2831, 3050
AcuI CTGAAG 7 cut(s) 1572, 1697, 1781, 2225, 2283, 3165, 3987
AcvI CACGTG 1 cut(s) 3044
AcyI GRCGYC 3 cut(s) 61, 1099, 2926
AdeI CACNNNGTG 1 cut(s) 1928
AfaI GTAC 8 cut(s) 454, 886, 1557, 2635, 2736, 3293, 3521, 4005
AfiI CCNNNNNNNGG 4 cut(s) 734, 879, 1762, 3580
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 6 cut(s) 848, 1441, 2317, 3041, 3043, 3609
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 4 cut(s) 822, 929, 1924, 3085
AleI CACNNNNGTG 1 cut(s) 563
Alw21I GWGCWC 3 cut(s) 318, 372, 2490
Alw26I GTCTC 9 cut(s) 135, 188, 1090, 2046, 2357, 2776, 2917, 2933, 3018
AlwI GGATC 1 cut(s) 2684
AlwNI CAGNNNCTG 3 cut(s) 210, 2338, 3939
Ama87I CYCGRG 1 cut(s) 3886
AoxI GGCC 3 cut(s) 1481, 3107, 3562
ApaI GGGCCC 1 cut(s) 3566
ApeKI GCWGC 5 cut(s) 14, 134, 177, 1613, 3265
ApoI RAATTY 8 cut(s) 469, 1625, 2082, 2639, 2657, 2765, 2831, 3050
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AseI ATTAAT 3 cut(s) 1236, 2385, 3468
Asp700I GAANNNNTTC 3 cut(s) 522, 573, 2328
AspLEI GCGC 2 cut(s) 727, 1828
AspS9I GGNCC 7 cut(s) 1830, 2230, 3296, 3508, 3562, 3563, 3973
AsuC2I CCSGG 1 cut(s) 3835
AvaI CYCGRG 1 cut(s) 3886
AvaII GGWCC 5 cut(s) 1830, 2230, 3296, 3508, 3973
BaeGI GKGCMC 2 cut(s) 3361, 3566
BaeI ACNNNNGTAYC 2 cut(s) 2221, 2254
BanII GRGCYC 4 cut(s) 372, 1054, 2490, 3566
BauI CACGAG 2 cut(s) 1308, 4084
BbrPI CACGTG 1 cut(s) 3044
BbsI GAAGAC 3 cut(s) 129, 560, 1962
Bbv12I GWGCWC 3 cut(s) 318, 372, 2490
BbvI GCAGC 4 cut(s) 121, 189, 1600, 3277
BceAI ACGGC 3 cut(s) 1177, 1859, 3094
BcgI CGANNNNNNTGC 2 cut(s) 1853, 1887
BciT130I CCWGG 4 cut(s) 824, 931, 1926, 3087
BciVI GTATCC 1 cut(s) 2515
BclI TGATCA 3 cut(s) 1165, 2839, 3796
BcnI CCSGG 1 cut(s) 3835
BcoDI GTCTC 9 cut(s) 135, 188, 1090, 2046, 2357, 2776, 2917, 2933, 3018
BcuI ACTAGT 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 728
BfrI CTTAAG 1 cut(s) 1187
BfuI GTATCC 1 cut(s) 2515
BglI GCCNNNNNGGC 1 cut(s) 1107
BglII AGATCT 2 cut(s) 2258, 2901
BisI GCNGC 8 cut(s) 15, 135, 178, 976, 1614, 3162, 3266, 3378
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 8 cut(s) 16, 136, 179, 977, 1615, 3163, 3267, 3379
Bme1390I CCNGG 5 cut(s) 824, 931, 1926, 3087, 3835
Bme18I GGWCC 5 cut(s) 1830, 2230, 3296, 3508, 3973
BmeT110I CYCGRG 1 cut(s) 3886
BmgT120I GGNCC 7 cut(s) 1830, 2230, 3296, 3508, 3562, 3563, 3973
BmiI GGNNCC 3 cut(s) 3509, 3564, 3974
BmrFI CCNGG 5 cut(s) 824, 931, 1926, 3087, 3835
BmsI GCATC 7 cut(s) 217, 1303, 1436, 1625, 1742, 2065, 2687
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 3 cut(s) 129, 560, 1962
BpmI CTGGAG 4 cut(s) 952, 1172, 2089, 2693
Bpu10I CCTNAGC 1 cut(s) 588
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 4 cut(s) 2440, 3413, 3431, 3611
BpuMI CCSGG 1 cut(s) 3835
Bsa29I ATCGAT 1 cut(s) 2568
BsaAI YACGTR 1 cut(s) 3044
BsaHI GRCGYC 3 cut(s) 61, 1099, 2926
BsaJI CCNNGG 6 cut(s) 873, 1559, 1606, 2233, 3086, 3441
BsaWI WCCGGW 1 cut(s) 440
BsaXI ACNNNNNCTCC 4 cut(s) 2087, 2117, 2998, 3028
Bsc4I CCNNNNNNNGG 4 cut(s) 734, 879, 1762, 3580
Bse118I RCCGGY 1 cut(s) 1024
Bse1I ACTGG 9 cut(s) 215, 807, 909, 2106, 2508, 2676, 2909, 2992, 3744
Bse3DI GCAATG 1 cut(s) 2146
BseBI CCWGG 4 cut(s) 824, 931, 1926, 3087
BseCI ATCGAT 1 cut(s) 2568
BseDI CCNNGG 6 cut(s) 873, 1559, 1606, 2233, 3086, 3441
BseLI CCNNNNNNNGG 4 cut(s) 734, 879, 1762, 3580
BseMI GCAATG 1 cut(s) 2146
BseMII CTCAG 5 cut(s) 491, 1958, 2928, 3755, 3994
BseNI ACTGG 9 cut(s) 215, 807, 909, 2106, 2508, 2676, 2909, 2992, 3744
BseRI GAGGAG 3 cut(s) 3006, 3428, 4046
BseSI GKGCMC 2 cut(s) 3361, 3566
BseXI GCAGC 4 cut(s) 121, 189, 1600, 3277
BseYI CCCAGC 2 cut(s) 2216, 3310
BsgI GTGCAG 1 cut(s) 1528
Bsh1236I CGCG 1 cut(s) 1828
BshFI GGCC 3 cut(s) 1483, 3109, 3564
BshVI ATCGAT 1 cut(s) 2568
BsiHKAI GWGCWC 3 cut(s) 318, 372, 2490
BsiHKCI CYCGRG 1 cut(s) 3886
BsiSI CCGG 4 cut(s) 24, 441, 1025, 3835
BslFI GGGAC 1 cut(s) 2740
BslI CCNNNNNNNGG 4 cut(s) 734, 879, 1762, 3580
BsmAI GTCTC 9 cut(s) 135, 188, 1090, 2046, 2357, 2776, 2917, 2933, 3018
BsmBI CGTCTC 4 cut(s) 135, 1090, 2357, 2933
BsmFI GGGAC 1 cut(s) 2740
BsmI GAATGC 1 cut(s) 1395
BsnI GGCC 3 cut(s) 1483, 3109, 3564
BsoBI CYCGRG 1 cut(s) 3886
Bsp120I GGGCCC 1 cut(s) 3562
Bsp1286I GDGCHC 6 cut(s) 318, 372, 1054, 2490, 3361, 3566
Bsp1407I TGTACA 1 cut(s) 3519
Bsp1720I GCTNAGC 1 cut(s) 329
Bsp19I CCATGG 2 cut(s) 1559, 2233
BspANI GGCC 3 cut(s) 1483, 3109, 3564
BspCNI CTCAG 5 cut(s) 492, 1959, 2927, 3756, 3993
BspDI ATCGAT 1 cut(s) 2568
BspFNI CGCG 1 cut(s) 1828
BspHI TCATGA 1 cut(s) 3799
BspLI GGNNCC 3 cut(s) 3509, 3564, 3974
BspMAI CTGCAG 1 cut(s) 111
BspPI GGATC 1 cut(s) 2684
BspTI CTTAAG 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 2146
BsrFI RCCGGY 1 cut(s) 1024
BsrGI TGTACA 1 cut(s) 3519
BsrI ACTGG 9 cut(s) 215, 807, 909, 2106, 2508, 2676, 2909, 2992, 3744
BssAI RCCGGY 1 cut(s) 1024
BssECI CCNNGG 6 cut(s) 873, 1559, 1606, 2233, 3086, 3441
BssNAI GTATAC 1 cut(s) 1689
BssNI GRCGYC 3 cut(s) 61, 1099, 2926
BssSI CACGAG 2 cut(s) 1308, 4084
BssT1I CCWWGG 3 cut(s) 873, 1559, 2233
Bst1107I GTATAC 1 cut(s) 1689
Bst2BI CACGAG 2 cut(s) 1308, 4084
Bst2UI CCWGG 4 cut(s) 824, 931, 1926, 3087
Bst4CI ACNGT 9 cut(s) 452, 1042, 1367, 1693, 1941, 2891, 3296, 3318, 3363
Bst6I CTCTTC 6 cut(s) 749, 915, 1716, 1761, 2249, 2520
BstACI GRCGYC 3 cut(s) 61, 1099, 2926
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 1313
BstAUI TGTACA 1 cut(s) 3519
BstBAI YACGTR 1 cut(s) 3044
BstC8I GCNNGC 7 cut(s) 132, 1757, 2168, 2211, 3375, 3562, 3784
BstDSI CCRYGG 3 cut(s) 1559, 2233, 3441
BstENI CCTNNNNNAGG 1 cut(s) 1760
BstFNI CGCG 1 cut(s) 1828
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 2 cut(s) 727, 1828
BstMAI GTCTC 9 cut(s) 135, 188, 1090, 2046, 2357, 2776, 2917, 2933, 3018
BstMWI GCNNNNNNNGC 9 cut(s) 20, 722, 984, 1107, 1145, 1313, 2430, 2738, 4089
BstNI CCWGG 4 cut(s) 824, 931, 1926, 3087
BstNSI RCATGY 8 cut(s) 852, 1385, 1445, 2170, 2321, 2745, 3491, 3613
BstPAI GACNNNNGTC 1 cut(s) 200
BstSCI CCNGG 5 cut(s) 822, 929, 1924, 3085, 3833
BstSFI CTRYAG 1 cut(s) 107
BstSLI GKGCMC 2 cut(s) 3361, 3566
BstUI CGCG 1 cut(s) 1828
BstV1I GCAGC 4 cut(s) 121, 189, 1600, 3277
BstV2I GAAGAC 3 cut(s) 129, 560, 1962
BstX2I RGATCY 2 cut(s) 2258, 2901
BstXI CCANNNNNNTGG 3 cut(s) 565, 682, 2113
BstYI RGATCY 2 cut(s) 2258, 2901
BstZ17I GTATAC 1 cut(s) 1689
Bsu15I ATCGAT 1 cut(s) 2568
BsuI GTATCC 1 cut(s) 2515
BsuRI GGCC 3 cut(s) 1483, 3109, 3564
BsuTUI ATCGAT 1 cut(s) 2568
BtgI CCRYGG 3 cut(s) 1559, 2233, 3441
BtgZI GCGATG 1 cut(s) 2235
BtsIMutI CAGTG 5 cut(s) 237, 902, 1372, 1964, 3737
Cac8I GCNNGC 7 cut(s) 132, 1757, 2168, 2211, 3375, 3562, 3784
CaiI CAGNNNCTG 3 cut(s) 210, 2338, 3939
CciI TCATGA 1 cut(s) 3799
CfoI GCGC 2 cut(s) 727, 1828
Cfr10I RCCGGY 1 cut(s) 1024
Cfr13I GGNCC 7 cut(s) 1830, 2230, 3296, 3508, 3562, 3563, 3973
ClaI ATCGAT 1 cut(s) 2568
CseI GACGC 4 cut(s) 69, 251, 1107, 2762
CsiI ACCWGGT 1 cut(s) 1924
Csp6I GTAC 8 cut(s) 453, 885, 1556, 2634, 2735, 3292, 3520, 4004
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviQI GTAC 8 cut(s) 453, 885, 1556, 2634, 2735, 3292, 3520, 4004
DraI TTTAAA 2 cut(s) 915, 1524
DraIII CACNNNGTG 1 cut(s) 1928
EaeI YGGCCR 1 cut(s) 3107
Eam1104I CTCTTC 6 cut(s) 749, 915, 1716, 1761, 2249, 2520
EarI CTCTTC 6 cut(s) 749, 915, 1716, 1761, 2249, 2520
Ecl136II GAGCTC 2 cut(s) 370, 2488
Eco130I CCWWGG 3 cut(s) 873, 1559, 2233
Eco24I GRGCYC 4 cut(s) 372, 1054, 2490, 3566
Eco32I GATATC 2 cut(s) 1372, 2572
Eco47I GGWCC 5 cut(s) 1830, 2230, 3296, 3508, 3973
Eco53kI GAGCTC 2 cut(s) 370, 2488
Eco57I CTGAAG 7 cut(s) 1572, 1697, 1781, 2225, 2283, 3165, 3987
Eco72I CACGTG 1 cut(s) 3044
Eco88I CYCGRG 1 cut(s) 3886
EcoICRI GAGCTC 2 cut(s) 370, 2488
EcoNI CCTNNNNNAGG 1 cut(s) 1760
EcoO109I RGGNCCY 1 cut(s) 3973
EcoRI GAATTC 2 cut(s) 469, 1625
EcoRII CCWGG 4 cut(s) 822, 929, 1924, 3085
EcoRV GATATC 2 cut(s) 1372, 2572
EcoT14I CCWWGG 3 cut(s) 873, 1559, 2233
EcoT22I ATGCAT 3 cut(s) 1318, 1383, 1395
EcoT38I GRGCYC 4 cut(s) 372, 1054, 2490, 3566
ErhI CCWWGG 3 cut(s) 873, 1559, 2233
Esp3I CGTCTC 4 cut(s) 135, 1090, 2357, 2933
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 2740
FauI CCCGC 3 cut(s) 827, 3271, 3553
FauNDI CATATG 1 cut(s) 2426
FbaI TGATCA 3 cut(s) 1165, 2839, 3796
FblI GTMKAC 1 cut(s) 1688
Fnu4HI GCNGC 8 cut(s) 15, 135, 178, 976, 1614, 3162, 3266, 3378
FriOI GRGCYC 4 cut(s) 372, 1054, 2490, 3566
Fsp4HI GCNGC 8 cut(s) 15, 135, 178, 976, 1614, 3162, 3266, 3378
GlaI GCGC 2 cut(s) 726, 1827
GluI GCNGC 8 cut(s) 15, 135, 178, 976, 1614, 3162, 3266, 3378
GsaI CCCAGC 2 cut(s) 2220, 3314
GsuI CTGGAG 4 cut(s) 952, 1172, 2089, 2693
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 3 cut(s) 1483, 3109, 3564
HapII CCGG 4 cut(s) 24, 441, 1025, 3835
HgaI GACGC 4 cut(s) 69, 251, 1107, 2762
HhaI GCGC 2 cut(s) 727, 1828
Hin1I GRCGYC 3 cut(s) 61, 1099, 2926
Hin6I GCGC 2 cut(s) 725, 1826
HinP1I GCGC 2 cut(s) 725, 1826
HindIII AAGCTT 1 cut(s) 1337
HpaII CCGG 4 cut(s) 24, 441, 1025, 3835
Hpy166II GTNNAC 6 cut(s) 42, 416, 887, 1469, 1689, 2993
Hpy8I GTNNAC 6 cut(s) 42, 416, 887, 1469, 1689, 2993
HpyCH4III ACNGT 9 cut(s) 452, 1042, 1367, 1693, 1941, 2891, 3296, 3318, 3363
HpyCH4IV ACGT 4 cut(s) 1736, 1974, 2926, 3043
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 722, 984, 1107, 1145, 1313, 2430, 2738, 4089
HpySE526I ACGT 4 cut(s) 1736, 1974, 2926, 3043
Hsp92I GRCGYC 3 cut(s) 61, 1099, 2926
HspAI GCGC 2 cut(s) 725, 1826
Ksp22I TGATCA 3 cut(s) 1165, 2839, 3796
LmnI GCTCC 3 cut(s) 2218, 2485, 3809
Lsp1109I GCAGC 4 cut(s) 121, 189, 1600, 3277
LweI GCATC 7 cut(s) 217, 1303, 1436, 1625, 1742, 2065, 2687
MabI ACCWGGT 1 cut(s) 1924
MaeII ACGT 4 cut(s) 1736, 1974, 2926, 3043
MfeI CAATTG 7 cut(s) 18, 45, 54, 474, 993, 1169, 1865
MflI RGATCY 2 cut(s) 2258, 2901
MhlI GDGCHC 6 cut(s) 318, 372, 1054, 2490, 3361, 3566
MlyI GAGTC 8 cut(s) 495, 754, 943, 2840, 3020, 3635, 3900, 4096
MmeI TCCRAC 9 cut(s) 790, 1435, 1659, 1771, 1857, 1866, 1923, 2568, 2577
Mph1103I ATGCAT 3 cut(s) 1318, 1383, 1395
MroXI GAANNNNTTC 3 cut(s) 522, 573, 2328
MslI CAYNNNNRTG 5 cut(s) 563, 1564, 2157, 2171, 3678
MspA1I CMGCKG 2 cut(s) 180, 3560
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 4 cut(s) 24, 441, 1025, 3835
MspR9I CCNGG 5 cut(s) 824, 931, 1926, 3087, 3835
MunI CAATTG 7 cut(s) 18, 45, 54, 474, 993, 1169, 1865
Mva1269I GAATGC 1 cut(s) 1395
MvaI CCWGG 4 cut(s) 824, 931, 1926, 3087
MvnI CGCG 1 cut(s) 1828
MwoI GCNNNNNNNGC 9 cut(s) 20, 722, 984, 1107, 1145, 1313, 2430, 2738, 4089
NciI CCSGG 1 cut(s) 3835
NcoI CCATGG 2 cut(s) 1559, 2233
NdeI CATATG 1 cut(s) 2426
NlaIV GGNNCC 3 cut(s) 3509, 3564, 3974
NmeAIII GCCGAG 2 cut(s) 61, 1124
NmuCI GTSAC 7 cut(s) 1695, 2435, 2650, 3583, 3605, 3849, 4049
NsiI ATGCAT 3 cut(s) 1318, 1383, 1395
NspI RCATGY 8 cut(s) 852, 1385, 1445, 2170, 2321, 2745, 3491, 3613
OliI CACNNNNGTG 1 cut(s) 563
PaeI GCATGC 1 cut(s) 2170
PagI TCATGA 1 cut(s) 3799
PciI ACATGT 4 cut(s) 848, 1441, 2317, 3609
PcsI WCGNNNNNNNCGW 1 cut(s) 2217
PctI GAATGC 1 cut(s) 1395
PdmI GAANNNNTTC 3 cut(s) 522, 573, 2328
PkrI GCNGC 8 cut(s) 16, 136, 179, 977, 1615, 3163, 3267, 3379
PleI GAGTC 8 cut(s) 494, 754, 942, 2840, 3019, 3634, 3900, 4095
PmaCI CACGTG 1 cut(s) 3044
PmlI CACGTG 1 cut(s) 3044
PpsI GAGTC 8 cut(s) 494, 754, 942, 2840, 3019, 3634, 3900, 4095
Ppu21I YACGTR 1 cut(s) 3044
PpuMI RGGWCCY 1 cut(s) 3973
PscI ACATGT 4 cut(s) 848, 1441, 2317, 3609
PshAI GACNNNNGTC 1 cut(s) 200
PshBI ATTAAT 3 cut(s) 1236, 2385, 3468
Psp124BI GAGCTC 2 cut(s) 372, 2490
Psp5II RGGWCCY 1 cut(s) 3973
Psp6I CCWGG 4 cut(s) 822, 929, 1924, 3085
PspCI CACGTG 1 cut(s) 3044
PspFI CCCAGC 2 cut(s) 2216, 3310
PspGI CCWGG 4 cut(s) 822, 929, 1924, 3085
PspN4I GGNNCC 3 cut(s) 3509, 3564, 3974
PspOMI GGGCCC 1 cut(s) 3562
PspPI GGNCC 7 cut(s) 1830, 2230, 3296, 3508, 3562, 3563, 3973
PspPPI RGGWCCY 1 cut(s) 3973
PstI CTGCAG 1 cut(s) 111
PstNI CAGNNNCTG 3 cut(s) 210, 2338, 3939
PsuI RGATCY 2 cut(s) 2258, 2901
RsaI GTAC 8 cut(s) 454, 886, 1557, 2635, 2736, 3293, 3521, 4005
RsaNI GTAC 8 cut(s) 453, 885, 1556, 2634, 2735, 3292, 3520, 4004
RseI CAYNNNNRTG 5 cut(s) 563, 1564, 2157, 2171, 3678
SacI GAGCTC 2 cut(s) 372, 2490
SatI GCNGC 8 cut(s) 15, 135, 178, 976, 1614, 3162, 3266, 3378
Sau96I GGNCC 7 cut(s) 1830, 2230, 3296, 3508, 3562, 3563, 3973
SchI GAGTC 8 cut(s) 495, 754, 943, 2840, 3020, 3635, 3900, 4096
ScrFI CCNGG 5 cut(s) 824, 931, 1926, 3087, 3835
SduI GDGCHC 6 cut(s) 318, 372, 1054, 2490, 3361, 3566
SexAI ACCWGGT 1 cut(s) 1924
SfaNI GCATC 7 cut(s) 217, 1303, 1436, 1625, 1742, 2065, 2687
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 5 cut(s) 1830, 2230, 3296, 3508, 3973
SmiMI CAYNNNNRTG 5 cut(s) 563, 1564, 2157, 2171, 3678
SmlI CTYRAG 5 cut(s) 1187, 2419, 3392, 3410, 3590
SmoI CTYRAG 5 cut(s) 1187, 2419, 3392, 3410, 3590
SpeI ACTAGT 1 cut(s) 197
SphI GCATGC 1 cut(s) 2170
SspI AATATT 2 cut(s) 1537, 3450
SstI GAGCTC 2 cut(s) 372, 2490
StyD4I CCNGG 5 cut(s) 822, 929, 1924, 3085, 3833
StyI CCWWGG 3 cut(s) 873, 1559, 2233
TaaI ACNGT 9 cut(s) 452, 1042, 1367, 1693, 1941, 2891, 3296, 3318, 3363
TaiI ACGT 4 cut(s) 1739, 1977, 2929, 3046
TaqI TCGA 6 cut(s) 859, 1290, 1873, 2568, 2718, 3988
TaqII GACCGA 1 cut(s) 296
TatI WGTACW 4 cut(s) 452, 2633, 3519, 4003
TauI GCSGC 3 cut(s) 978, 3164, 3380
TscAI CASTG 5 cut(s) 244, 909, 1372, 1971, 3744
TseFI GTSAC 7 cut(s) 1695, 2435, 2650, 3583, 3605, 3849, 4049
TseI GCWGC 5 cut(s) 14, 134, 177, 1613, 3265
Tsp45I GTSAC 7 cut(s) 1695, 2435, 2650, 3583, 3605, 3849, 4049
TspRI CASTG 5 cut(s) 244, 909, 1372, 1971, 3744
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 5 cut(s) 1830, 2230, 3296, 3508, 3973
VspI ATTAAT 3 cut(s) 1236, 2385, 3468
XagI CCTNNNNNAGG 1 cut(s) 1760
XapI RAATTY 8 cut(s) 469, 1625, 2082, 2639, 2657, 2765, 2831, 3050
XbaI TCTAGA 1 cut(s) 643
XceI RCATGY 8 cut(s) 852, 1385, 1445, 2170, 2321, 2745, 3491, 3613
XcmI CCANNNNNNNNNTGG 2 cut(s) 2132, 2224
XmiI GTMKAC 1 cut(s) 1688
XmnI GAANNNNTTC 3 cut(s) 522, 573, 2328
ZraI GACGTC 1 cut(s) 2927
Zsp2I ATGCAT 3 cut(s) 1318, 1383, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.