Rroxscaffold_1G00060560

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000042
Physical Location & Seq
Reverse (-)
82776140 .. 82784293
8154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060560.1

Sequence Viewer

Length: 3324 bp
ATGGACTCAATTCTTTCAAAAATTGCCGAGTACACAATTGAACCCATTGGACGCCTACTGGGACGCCAAGTGGGTTATGTAATTCACTGCAGTACCAACATTCAAAACTTGAAGAGCAAAGTGGAAGAATTGAAAGCTTCCAGGCAGGCGATAGAGAATAAGATTGCTGAAGCCAAAAGAAAAGGTGAACAGATTCAACCAGATGTCCAGTTGTGGCTTAAAAAAGTGAGTGAGATCACTGCACAGACAGATGAATTGTTGAACGAAGAAAGCCAAGCAAAGCTGAAATGTCTCCATGGGTTTTGTCCTAATCTGACTACCCGTCATCAGCTAAGCAGGGAATCAACAAAACTGGTACAGGAGGTTGCTGAACAGTATGAAAAAAGAGAATTTTCCCAAGTTTCGTGTGGTACTCTTCGGAAGGAGGTATGGGCTGTAACTAATGGCGATTACCAGGCTTTTCGGTCAAGGATGTCAATTGTGAAGGAAATCATGGATAGTCTGAAAGACTCCCATATTCATAGGATGGGGGTGTGTGGAATCGGAGGAGTTGGTAAAACCACATTGGTCAAAGAAGTGTACAAGCAAGCTTCAGAAGATAAAGAGTTATTTGATAATGTGGTGATCCTATTAGATGTGAAAAGTAATCCAGACCCGGAAGCAATTCAAAAGAAGATTGTTGAAAAGCTGGGCATGGAGCTTCTTCAAACTGAAACTATAGAAGGAAGAGCGAGTCGGCTATGTGCCAAGATACAGGGCAAAAAGATTCTTATCATTTTGGATGATGTTCAAGAAAAGATTGAGTTGGAGGATATGGGAGTTCCCCGTCTCCCAACTTATTTGAGAATGAGAAACAGCTTTAACAAATGGGAGGTTGAAGGTGAAAATAGTAATGCAAGCTTGTCTGAGCTAAAGCAATTGTCTCAGCTATCCGCATTAGAAATACATATTCCAGATGCTGACATTCTTCCAGCAAACTTGTTCTCCGACAAGTTAGAGAGATTCAATATTTTTATTGGGGATGTGTGGGATGCGAGATATTCTTGGGATAAACCTATGGCTGCCGTGACTCTTAACACACTGAAACTCAAGCTCACTAACAATAAGATTATGGGATTAGATGAAGGCCTAAAATCGTTGCTGAAGAGATCTGAGGACTTGTCCTTAGATGAGAGTGTTGTTAATATCATCCAGCAATTGGGTACCAAAGATTTTGAGAATGTGAAACATCTACGACTCCAAAGCAATATTGACTTTACAGATATCATTAATAGAAAGGTTGTATTCCCAAATCTCGTAACCTTGGAGGTGCATGGATGTAATAATTCAAGATTTTTGTTCTCATTTTCTGTGGCTAAAAGTTTTATACTATTGAAACACCTGAAAATATCCATATGTGAACTTCTGCAAGAGATTGTATCATCAACAAGAGAATGCGATGAAGAAAATTATATGGATGACATGTTTCCTAAACTCAACACTTTGAAACTCAAAGCACTCCCAAACCTTGCTAGATTTGGCACAGGAAATTATGTTGAATTTCCGGTCTTGGAAGAATTGGAGATAGATGATTGTGTTAAATTGGTGGAATTCATTGGCAATAAAGTTGCTACGAGTAGTGAAGATACTAGAAACAGCAAGGAAATTGAACAGAGGATTTTGGAAGAGGAAGAAAACCTTGATGTTAAGAGCGAGACAGTTGTACAATATATCCTCTTTGACAAAAAGGTAGGATTTCCTAGCTTGGAGAGATTGAGCATCGAAGGGGTAAGCGAGTTGAAGGCAATATGGCATGTCCAACTTGCTCGAGACTCTTTTCGGAGACTCAAGCAAGTAGATGTCCAGGAATGCAAAAATCTAGTAAGTTTGTTTCCGCCTAGTGTCATTGGAAGATTGAATGCCCTGGAAACCTTGAAGATATGGGGCTGCGGATCACTAGAAGTGATATTTGAATTACCGGGAAGAAGTAATGTTAAAGAAATACATGCCGACACATCATTCCCTCATGACCAATTGAAACATTTTGATTGTCAAAATCTTGATTCAATAAACATATACGAGTGTCATAGTTTGAAACAGATTTTCCCAGCCTCAGTGGCCAGAGGTCTTCAAAACCTGACTCGGTTGGATGTGGACAAATGTGATGCAATTGAGGAAATTGTTGGTGAGGAAGAGGAAAAAGAAGGTCTAGAAACAATACCTCCTCATTTTGTTTTCTCAAAAGTAACATCGGTGGAGTTGAAGGATCTGCCTCAACTTACGAGTTTTTATCCCAAAACACATGCTTCCCAGTGGCCAGTACTAGCACAATTGGAAGTGAAGGGATGTGATAAAGTGGGAATATTTGCCGCAGAATTTTCAGTCTCTAAAAAGAAACATGAGATGAATCATCTAATGTCAACACCACCTTTATTTTCAATCAGCGAGGATTCGTTCCTCGACTTGGAAGACTTAGAATTGAATGACATGGAAATTTGGAATGGACCACCGCCAGCAAATCCGATGGTGTTTGGCAAATTAAAATCAATTACCTTTCGTGGGAGTTGTGCACCTTTCTCCAAGCAAGCTTCGGTCATTTTCCTCCAGAGATTACAAAATCTTGAAAAAATTGAAATCGACAATTGTTCTTGGGAAGCTATATTTGTCAATCAAGGAATTAGTACTGGGGAAGAAAAACATGATGACGGAGTTAGGAGTGGGGGCCTCCCGCGTGTAAGGATTTTGAGCCTCGAGAGTATGGACGAACTGTTGCATCTAGGGAATGACAACTCCCAATCACTACTTTTTCCAAATTTGGAAACTCTTAAGGTGTCGTGGTGTACCATATTAAAGAGTCTGGAGTCATATGCAATATTCTTCCGAAATCTAACAACTTTGACAATATATGCTTGTGATGCATTGAAATATTTAACAAGTTATTCGGTGGCTAAAAGCTTGGTGCAACTCACGACGTTGAAAGTGGACTACTGTGTTGAAATTGTAGTAATAGTGTCAAGCAACGGAGATGATGATGCTGATGCAGCAGGAAATAAGATCGCTTTCAGCCGCTTGCAGCATTTGGAGCTTACTGGTCTACCAAGTCTACAAGGTTTTTGCTCCGGGAATTGCACTCTCAAATTCCCATCCTCTATGACCTTACAAGTAGAAGACTGCCCAATCAAGTTGAAGATTTCCCCTGAAGGAGTCCTCTTGACCGAGATAGACCATCAATTTCAGCAAAACAGAGTTGATTATGATAGTGACGATGATGATGAGGAGGAGAAGGAGGATGTTGAAACGGTTGAGAGAAATCCTGAAATATTATCAGAAGGGCCTGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1107

Amino Acids

125.13

Weight (kDa)

5.07

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 276 3e-17 NB-ARC domain
AAA_22 PF13401 178 - 267 5.6e-07 AAA domain
LRR_RPS2 PF23247 408 - 537 1.1e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 583 - 661 4.9e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 669 - 779 7.6e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 820 - 946 2.5e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 951 - 1052 1.5e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1202
AccB1I GGYRCC 1 cut(s) 1202
AccB7I CCANNNNNTGG 1 cut(s) 1198
AccI GTMKAC 2 cut(s) 3073, 3082
AccII CGCG 1 cut(s) 2710
AciI CCGC 7 cut(s) 933, 1874, 1929, 2349, 2489, 2708, 3046
AclWI GGATC 3 cut(s) 619, 1939, 2253
AcoI YGGCCR 2 cut(s) 2097, 2294
AcsI RAATTY 7 cut(s) 389, 1538, 1589, 2354, 2472, 2791, 3116
AcuI CTGAAG 4 cut(s) 189, 576, 1163, 3198
AcyI GRCGYC 2 cut(s) 52, 64
AfiI CCNNNNNNNGG 3 cut(s) 1198, 2443, 2538
AflII CTTAAG 1 cut(s) 2804
AflIII ACRYGT 1 cut(s) 1461
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 4 cut(s) 140, 453, 1842, 1902
Alw21I GWGCWC 1 cut(s) 2551
Alw26I GTCTC 7 cut(s) 296, 833, 927, 1688, 1803, 1816, 2368
Alw44I GTGCAC 1 cut(s) 2547
AlwI GGATC 3 cut(s) 619, 1939, 2253
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 2 cut(s) 1806, 2729
AoxI GGCC 5 cut(s) 1126, 2097, 2294, 2701, 3311
ApaLI GTGCAC 1 cut(s) 2547
ApeKI GCWGC 4 cut(s) 1061, 1926, 3020, 3052
ApoI RAATTY 7 cut(s) 389, 1538, 1589, 2354, 2472, 2791, 3116
AseI ATTAAT 1 cut(s) 1269
Asp700I GAANNNNTTC 2 cut(s) 192, 663
Asp718I GGTACC 1 cut(s) 1202
AspS9I GGNCC 3 cut(s) 2483, 2701, 3311
AsuC2I CCSGG 3 cut(s) 656, 1959, 3100
AsuHPI GGTGA 4 cut(s) 197, 634, 893, 2177
AsuNHI GCTAGC 1 cut(s) 3317
AvaI CYCGRG 2 cut(s) 1806, 2729
AvaII GGWCC 1 cut(s) 2483
BaeGI GKGCMC 1 cut(s) 2551
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BalI TGGCCA 2 cut(s) 2099, 2296
BanI GGYRCC 1 cut(s) 1202
BbsI GAAGAC 3 cut(s) 2099, 2454, 3153
Bbv12I GWGCWC 1 cut(s) 2551
BbvI GCAGC 4 cut(s) 1048, 1913, 3032, 3064
BccI CCATC 4 cut(s) 520, 2497, 3130, 3213
BceAI ACGGC 1 cut(s) 1049
BciT130I CCWGG 4 cut(s) 142, 455, 1844, 1904
BcnI CCSGG 3 cut(s) 656, 1959, 3100
BcoDI GTCTC 7 cut(s) 296, 833, 927, 1688, 1803, 1816, 2368
BfmI CTRYAG 2 cut(s) 88, 717
BfrI CTTAAG 1 cut(s) 2804
BglI GCCNNNNNGGC 1 cut(s) 2096
BglII AGATCT 1 cut(s) 1148
BisI GCNGC 6 cut(s) 1062, 1927, 2349, 3021, 3046, 3053
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 6 cut(s) 1063, 1928, 2350, 3022, 3047, 3054
BmcAI AGTACT 2 cut(s) 2301, 2662
Bme1390I CCNGG 7 cut(s) 142, 455, 656, 1844, 1904, 1959, 3100
Bme18I GGWCC 1 cut(s) 2483
BmeRI GACNNNNNGTC 1 cut(s) 321
BmeT110I CYCGRG 2 cut(s) 1806, 2729
BmgT120I GGNCC 3 cut(s) 2483, 2701, 3311
BmiI GGNNCC 2 cut(s) 1204, 2702
BmrFI CCNGG 7 cut(s) 142, 455, 656, 1844, 1904, 1959, 3100
BmrI ACTGGG 3 cut(s) 68, 2284, 2673
BmsI GCATC 8 cut(s) 946, 1021, 1767, 2134, 2761, 2884, 3001, 3007
BmtI GCTAGC 1 cut(s) 3321
BmuI ACTGGG 3 cut(s) 68, 2284, 2673
BpiI GAAGAC 3 cut(s) 2099, 2454, 3153
BpmI CTGGAG 2 cut(s) 2567, 2858
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 2 cut(s) 1073, 1811
BpuMI CCSGG 3 cut(s) 656, 1959, 3100
BsaBI GATNNNNATC 1 cut(s) 770
BsaHI GRCGYC 2 cut(s) 52, 64
BsaJI CCNNGG 3 cut(s) 295, 1302, 1902
BsaWI WCCGGW 1 cut(s) 1543
BsaXI ACNNNNNCTCC 4 cut(s) 968, 998, 2185, 2215
Bsc4I CCNNNNNNNGG 3 cut(s) 1198, 2443, 2538
Bse1I ACTGG 7 cut(s) 63, 208, 357, 2290, 2297, 2668, 3073
Bse8I GATNNNNATC 1 cut(s) 770
BseBI CCWGG 4 cut(s) 142, 455, 1844, 1904
BseDI CCNNGG 3 cut(s) 295, 1302, 1902
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 3 cut(s) 1198, 2443, 2538
BseMII CTCAG 4 cut(s) 897, 938, 1143, 2106
BseNI ACTGG 7 cut(s) 63, 208, 357, 2290, 2297, 2668, 3073
BseRI GAGGAG 4 cut(s) 561, 2193, 3269, 3272
BseSI GKGCMC 1 cut(s) 2551
BseXI GCAGC 4 cut(s) 1048, 1913, 3032, 3064
BseYI CCCAGC 2 cut(s) 688, 2086
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 2710
BshFI GGCC 5 cut(s) 1128, 2099, 2296, 2703, 3313
BshNI GGYRCC 1 cut(s) 1202
BsiHKAI GWGCWC 1 cut(s) 2551
BsiHKCI CYCGRG 2 cut(s) 1806, 2729
BsiSI CCGG 4 cut(s) 656, 1544, 1958, 3099
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 3 cut(s) 1198, 2443, 2538
BsmAI GTCTC 7 cut(s) 296, 833, 927, 1688, 1803, 1816, 2368
BsmBI CGTCTC 1 cut(s) 833
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 3 cut(s) 1439, 1853, 1903
BsnI GGCC 5 cut(s) 1128, 2099, 2296, 2703, 3313
BsoBI CYCGRG 2 cut(s) 1806, 2729
Bsp1286I GDGCHC 1 cut(s) 2551
Bsp1407I TGTACA 2 cut(s) 579, 1702
Bsp143I GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
Bsp1720I GCTNAGC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 7 cut(s) 933, 1874, 1929, 2349, 2489, 2708, 3046
BspANI GGCC 5 cut(s) 1128, 2099, 2296, 2703, 3313
BspCNI CTCAG 4 cut(s) 898, 937, 1144, 2105
BspFNI CGCG 1 cut(s) 2710
BspHI TCATGA 1 cut(s) 2005
BspLI GGNNCC 2 cut(s) 1204, 2702
BspMAI CTGCAG 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 3321
BspPI GGATC 3 cut(s) 619, 1939, 2253
BspQI GCTCTTC 2 cut(s) 107, 721
BspT107I GGYRCC 1 cut(s) 1202
BspTI CTTAAG 1 cut(s) 2804
BsrGI TGTACA 2 cut(s) 579, 1702
BsrI ACTGG 7 cut(s) 63, 208, 357, 2290, 2297, 2668, 3073
BssECI CCNNGG 3 cut(s) 295, 1302, 1902
BssMI GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
BssNI GRCGYC 2 cut(s) 52, 64
BssT1I CCWWGG 2 cut(s) 295, 1302
Bst2UI CCWGG 4 cut(s) 142, 455, 1844, 1904
Bst4CI ACNGT 5 cut(s) 375, 1699, 2748, 2969, 3280
Bst6I CTCTTC 6 cut(s) 107, 420, 721, 1139, 1659, 2166
BstACI GRCGYC 2 cut(s) 52, 64
BstAFI CTTAAG 1 cut(s) 2804
BstAUI TGTACA 2 cut(s) 579, 1702
BstC8I GCNNGC 8 cut(s) 147, 588, 898, 2493, 2565, 3050, 3315, 3319
BstDEI CTNAG 7 cut(s) 332, 906, 924, 1152, 1165, 2092, 2452
BstDSI CCRYGG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 2710
BstKTI GATC 6 cut(s) 237, 627, 1151, 1934, 2248, 3036
BstMAI GTCTC 7 cut(s) 296, 833, 927, 1688, 1803, 1816, 2368
BstMBI GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
BstMWI GCNNNNNNNGC 4 cut(s) 2096, 2894, 3020, 3061
BstNI CCWGG 4 cut(s) 142, 455, 1844, 1904
BstNSI RCATGY 4 cut(s) 1465, 1796, 1988, 2285
BstSCI CCNGG 7 cut(s) 140, 453, 654, 1842, 1902, 1957, 3098
BstSFI CTRYAG 2 cut(s) 88, 717
BstSLI GKGCMC 1 cut(s) 2551
BstUI CGCG 1 cut(s) 2710
BstV1I GCAGC 4 cut(s) 1048, 1913, 3032, 3064
BstV2I GAAGAC 3 cut(s) 2099, 2454, 3153
BstX2I RGATCY 2 cut(s) 1148, 2245
BstYI RGATCY 2 cut(s) 1148, 2245
BsuRI GGCC 5 cut(s) 1128, 2099, 2296, 2703, 3313
BtgI CCRYGG 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 1452
BtsI GCAGTG 2 cut(s) 85, 237
BtsIMutI CAGTG 5 cut(s) 85, 237, 1079, 2100, 2297
Cac8I GCNNGC 8 cut(s) 147, 588, 898, 2493, 2565, 3050, 3315, 3319
CaiI CAGNNNCTG 1 cut(s) 959
CciI TCATGA 1 cut(s) 2005
Cfr13I GGNCC 3 cut(s) 2483, 2701, 3311
CseI GACGC 2 cut(s) 60, 72
DdeI CTNAG 7 cut(s) 332, 906, 924, 1152, 1165, 2092, 2452
DpnI GATC 6 cut(s) 236, 626, 1150, 1933, 2247, 3035
DpnII GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
DriI GACNNNNNGTC 1 cut(s) 321
EaeI YGGCCR 2 cut(s) 2097, 2294
Eam1104I CTCTTC 6 cut(s) 107, 420, 721, 1139, 1659, 2166
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 6 cut(s) 107, 420, 721, 1139, 1659, 2166
EciI GGCGGA 1 cut(s) 1863
Eco130I CCWWGG 2 cut(s) 295, 1302
Eco147I AGGCCT 1 cut(s) 1128
Eco32I GATATC 1 cut(s) 1264
Eco47I GGWCC 1 cut(s) 2483
Eco57I CTGAAG 4 cut(s) 189, 576, 1163, 3198
Eco88I CYCGRG 2 cut(s) 1806, 2729
EcoO109I RGGNCCY 2 cut(s) 2701, 3311
EcoRI GAATTC 1 cut(s) 1589
EcoRII CCWGG 4 cut(s) 140, 453, 1842, 1902
EcoRV GATATC 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 295, 1302
EcoT22I ATGCAT 1 cut(s) 2899
ErhI CCWWGG 2 cut(s) 295, 1302
Esp3I CGTCTC 1 cut(s) 833
FalI AAGNNNNNCTT 2 cut(s) 1662, 1694
FaqI GGGAC 1 cut(s) 75
FauI CCCGC 1 cut(s) 2715
FauNDI CATATG 2 cut(s) 1394, 2845
FblI GTMKAC 2 cut(s) 3073, 3082
Fnu4HI GCNGC 6 cut(s) 1062, 1927, 2349, 3021, 3046, 3053
Fsp4HI GCNGC 6 cut(s) 1062, 1927, 2349, 3021, 3046, 3053
GluI GCNGC 6 cut(s) 1062, 1927, 2349, 3021, 3046, 3053
GsaI CCCAGC 2 cut(s) 692, 2090
GsuI CTGGAG 2 cut(s) 2567, 2858
HaeIII GGCC 5 cut(s) 1128, 2099, 2296, 2703, 3313
HapII CCGG 4 cut(s) 656, 1544, 1958, 3099
HgaI GACGC 2 cut(s) 60, 72
Hin1I GRCGYC 2 cut(s) 52, 64
HincII GTYRAC 1 cut(s) 2400
HindII GTYRAC 1 cut(s) 2400
HindIII AAGCTT 5 cut(s) 135, 588, 898, 2565, 2932
HpaII CCGG 4 cut(s) 656, 1544, 1958, 3099
HphI GGTGA 4 cut(s) 197, 634, 893, 2177
Hpy99I CGWCG 1 cut(s) 2953
HpyCH4III ACNGT 5 cut(s) 375, 1699, 2748, 2969, 3280
HpyCH4IV ACGT 1 cut(s) 2951
HpyF10VI GCNNNNNNNGC 4 cut(s) 2096, 2894, 3020, 3061
HpyF3I CTNAG 7 cut(s) 332, 906, 924, 1152, 1165, 2092, 2452
HpySE526I ACGT 1 cut(s) 2951
Hsp92I GRCGYC 2 cut(s) 52, 64
KpnI GGTACC 1 cut(s) 1206
Kzo9I GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
LguI GCTCTTC 2 cut(s) 107, 721
LmnI GCTCC 3 cut(s) 697, 3061, 3101
Lsp1109I GCAGC 4 cut(s) 1048, 1913, 3032, 3064
LweI GCATC 8 cut(s) 946, 1021, 1767, 2134, 2761, 2884, 3001, 3007
MaeII ACGT 1 cut(s) 2951
MaeIII GTNAC 5 cut(s) 436, 1066, 1297, 2224, 3239
MalI GATC 6 cut(s) 236, 626, 1150, 1933, 2247, 3035
MboI GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
MfeI CAATTG 8 cut(s) 36, 477, 917, 1196, 2012, 2148, 2309, 2620
MflI RGATCY 2 cut(s) 1148, 2245
MhlI GDGCHC 1 cut(s) 2551
MlsI TGGCCA 2 cut(s) 2099, 2296
MluNI TGGCCA 2 cut(s) 2099, 2296
MmeI TCCRAC 4 cut(s) 786, 1011, 1822, 2106
Mox20I TGGCCA 2 cut(s) 2099, 2296
Mph1103I ATGCAT 1 cut(s) 2899
MroXI GAANNNNTTC 2 cut(s) 192, 663
MscI TGGCCA 2 cut(s) 2099, 2296
Msp20I TGGCCA 2 cut(s) 2099, 2296
MspCI CTTAAG 1 cut(s) 2804
MspI CCGG 4 cut(s) 656, 1544, 1958, 3099
MspR9I CCNGG 7 cut(s) 142, 455, 656, 1844, 1904, 1959, 3100
MunI CAATTG 8 cut(s) 36, 477, 917, 1196, 2012, 2148, 2309, 2620
Mva1269I GAATGC 3 cut(s) 1439, 1853, 1903
MvaI CCWGG 4 cut(s) 142, 455, 1844, 1904
MvnI CGCG 1 cut(s) 2710
MwoI GCNNNNNNNGC 4 cut(s) 2096, 2894, 3020, 3061
NciI CCSGG 3 cut(s) 656, 1959, 3100
NcoI CCATGG 1 cut(s) 295
NdeI CATATG 2 cut(s) 1394, 2845
NdeII GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
NheI GCTAGC 1 cut(s) 3317
NlaIV GGNNCC 2 cut(s) 1204, 2702
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 1066, 3239
NsiI ATGCAT 1 cut(s) 2899
NspI RCATGY 4 cut(s) 1465, 1796, 1988, 2285
PaeR7I CTCGAG 2 cut(s) 1806, 2729
PagI TCATGA 1 cut(s) 2005
PceI AGGCCT 1 cut(s) 1128
PciI ACATGT 1 cut(s) 1461
PciSI GCTCTTC 2 cut(s) 107, 721
PctI GAATGC 3 cut(s) 1439, 1853, 1903
PdmI GAANNNNTTC 2 cut(s) 192, 663
PfeI GAWTC 8 cut(s) 193, 341, 540, 766, 1002, 2042, 2386, 2429
PflMI CCANNNNNTGG 1 cut(s) 1198
PfoI TCCNGGA 2 cut(s) 1842, 3098
PkrI GCNGC 6 cut(s) 1063, 1928, 2350, 3022, 3047, 3054
PscI ACATGT 1 cut(s) 1461
PshBI ATTAAT 1 cut(s) 1269
Psp6I CCWGG 4 cut(s) 140, 453, 1842, 1902
PspFI CCCAGC 2 cut(s) 688, 2086
PspGI CCWGG 4 cut(s) 140, 453, 1842, 1902
PspN4I GGNNCC 2 cut(s) 1204, 2702
PspPI GGNCC 3 cut(s) 2483, 2701, 3311
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 2 cut(s) 1148, 2245
SapI GCTCTTC 2 cut(s) 107, 721
SatI GCNGC 6 cut(s) 1062, 1927, 2349, 3021, 3046, 3053
Sau3AI GATC 6 cut(s) 234, 624, 1148, 1931, 2245, 3033
Sau96I GGNCC 3 cut(s) 2483, 2701, 3311
ScaI AGTACT 2 cut(s) 2301, 2662
ScrFI CCNGG 7 cut(s) 142, 455, 656, 1844, 1904, 1959, 3100
SduI GDGCHC 1 cut(s) 2551
SfaNI GCATC 8 cut(s) 946, 1021, 1767, 2134, 2761, 2884, 3001, 3007
SfcI CTRYAG 2 cut(s) 88, 717
Sfr274I CTCGAG 2 cut(s) 1806, 2729
SinI GGWCC 1 cut(s) 2483
SlaI CTCGAG 2 cut(s) 1806, 2729
SmlI CTYRAG 5 cut(s) 1088, 1806, 1826, 2729, 2804
SmoI CTYRAG 5 cut(s) 1088, 1806, 1826, 2729, 2804
SseBI AGGCCT 1 cut(s) 1128
SsiI CCGC 7 cut(s) 933, 1874, 1929, 2349, 2489, 2708, 3046
SspI AATATT 6 cut(s) 1009, 1249, 2343, 2853, 2906, 3300
StuI AGGCCT 1 cut(s) 1128
StyD4I CCNGG 7 cut(s) 140, 453, 654, 1842, 1902, 1957, 3098
StyI CCWWGG 2 cut(s) 295, 1302
TaaI ACNGT 5 cut(s) 375, 1699, 2748, 2969, 3280
TaiI ACGT 1 cut(s) 2954
TaqI TCGA 5 cut(s) 1761, 1807, 2439, 2616, 2730
TaqII GACCGA 3 cut(s) 453, 2560, 3209
TatI WGTACW 5 cut(s) 30, 579, 1702, 2299, 2660
TauI GCSGC 2 cut(s) 2351, 3048
TfiI GAWTC 8 cut(s) 193, 341, 540, 766, 1002, 2042, 2386, 2429
TscAI CASTG 5 cut(s) 92, 244, 1086, 2100, 2297
TseFI GTSAC 2 cut(s) 1066, 3239
TseI GCWGC 4 cut(s) 1061, 1926, 3020, 3052
Tsp45I GTSAC 2 cut(s) 1066, 3239
TspDTI ATGAA 7 cut(s) 267, 393, 509, 1137, 1455, 1582, 2399
TspGWI ACGGA 2 cut(s) 2700, 3015
TspRI CASTG 5 cut(s) 92, 244, 1086, 2100, 2297
Van91I CCANNNNNTGG 1 cut(s) 1198
Vha464I CTTAAG 1 cut(s) 2804
VneI GTGCAC 1 cut(s) 2547
VpaK11BI GGWCC 1 cut(s) 2483
VspI ATTAAT 1 cut(s) 1269
XapI RAATTY 7 cut(s) 389, 1538, 1589, 2354, 2472, 2791, 3116
XbaI TCTAGA 1 cut(s) 2188
XceI RCATGY 4 cut(s) 1465, 1796, 1988, 2285
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XhoI CTCGAG 2 cut(s) 1806, 2729
XmiI GTMKAC 2 cut(s) 3073, 3082
XmnI GAANNNNTTC 2 cut(s) 192, 663
ZrmI AGTACT 2 cut(s) 2301, 2662
Zsp2I ATGCAT 1 cut(s) 2899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.