Rw5G010840

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
11947249 .. 11949351
2103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010840.1

Sequence Viewer

Length: 2103 bp
ATGGAGTTTCTTTCAAAGATTGTGGAGTACCCGATTGAACTTGTTGGACGTCTACTGGGACGCCAAGTGGGTTATGTAATTCACTGCAGAACCAACATTCAAAAGCTACAGGATCAAGTGAAAGAATTGAAAGCTGCCAGAGAGACGATAAAGTATAAGGTTGCTGAAGCTGAAACAAAAGGTGAAAAAATACGACATGATGTCGAGTTGTGGCTGACAACAGTGGACGAGATCACTGCAAAGACGGACGAATTGTTGAATGACGAAAGCCAAGCAAAGCTGAAATGTCTCCATGGCTTTTGTCCTAATCTGACTTTCCGTCATCAGATAAGCAGGAAATCAACAAAATTGGTTGAGGAGGTTGTTGAACAGTATGGAAAAAAAGAATTTTCCCAAGTTTCGTGTGGTAATTTACGGAAGGAGGTATGGGATGTAACTACCGGAGATTACCAGGCCTTTGAATCAAGGATGTTAATTGTTAAGGACATCATGGATAGTCTGAAAGTCTCTGATATTCAGAGGATTGGGGTGTGTGGAATTGGAGGAGTGGGTAAAACCACATTGGTCAAACAAGTTTACAGGCAAGCTTCAGAAGATAAACAGTTATTTGATAATGTGGTTATGCTATTAGATGTGAAAAGTAATCCAGACCTGGAATTAATTCAAAAGAAAATTGTTGAGAAGCTGGGTATGGACGTTCTTGATAATGAAACGATAGACGGAAGAGCGAGCCGTCTATGTGCCAGGATACAAGGCAAAAACGTTCTTGTGATTTTGGATGATGTTCAAGAAAAAATGGATTTGGAGGTTGTGGGACTTCCTCGTCTGCCAACTTGTAAAATTTTGTTGACATGTAGAACTCGAGAAGTTTTATCTTTTCATAAGATGCGGGCGGAAAAAGTGTTTCAGCTTGACATTTTAAATAAAGAAGAAACTTGGAGTATGTTTGTGAAGATGGCGGGTGATGTTATTAAACAAAATGATCGTATACGAGATATAGCGATCCAAGTAGCTGAAAAATGTGGAGGTTTGCCTTTGTTAGTCGTCACAGTTGCGAGTGCTTTAAAAGAGAGAAATAAATCAGAAGCATGGAAAGATGCCTTAAGACGACTCAGAAGGTTTGACAAGGAAGAGTCAATAGAAAAAGCATACATGACTTTAGAGTGGAGTTACGAGCAATTAGATGATAAGGAGCTTAAACCGTTGTTCTTACTATGTGGAATTTCAGCGCGGCAGAACCATATTTGTTTGCAGGATTTGTTGAATTATGGTATGGGTTTAGGTTTGTTTTTAAACATCAATACAGTGGAAGAAGCAAGGGATGCATTGGATTCACTACTTGAAAAACTCAAAGATTCTTGCTTGTTGATGGACAGTGATGTTGATGGCACGGTCAGAATGCATGATCTTGTATGTCATGTTGCTAACCGGATTGCAAAGAGAGATCAACACATGTTATCAGTAGAGTATGGAGGTGAGTTGAAAGAATGGCCAAGTAAGGATTTCTTAAAGAAGTGCACTAAGATCTCTCTCCTGCAAGTCAATATTCCTACACTTTCTGAAATGCCTTTGGAATGTCTAGAATTAGAATTGTTTCACTTGTACAATAAAGATTTCTCGATGGAAATCCCATCCAACTTCTTTAGAGAGATGCAGAAACTCAAAGTTCTGGATTTAACCAACATGTATATGCCATCATTGCCTTTATCTCTTCAATACTTGAAGACGCTTCAAACGTTGTGCTTAGATGGGTGCATGCTGGGAGATATAACTCTACTCGGGCAGCTAAGCAGCTTAGAAATTCTTAGCCTTTTACAATCCAATTTTGAAGAATTGCCTAGAGAAATAGGGCAATTGACTCGTCTTCGGTTATTGGATTTATCCGAGTGTTATCAACTTGAAGTGATTTCACCTACCGTCATATCAAGCTTGGTGAGATTGGAAGATTTGAGAATGAGAAACAGCTTTAACAAATGGGAGGTTGAAGGTGAAAGTAGTAATGCAAGCCTGTCTGAGCTAAAGCACTTGTCTCAGCTATCCGCATTAGAAATACATATTCCGAATGCTGACATTCTTCCAGCTGTTGAAGGAATATCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

700

Amino Acids

79.99

Weight (kDa)

5.53

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 160 - 321 4.8e-27 NB-ARC domain
LRR_14 PF23598 593 - 687 3.2e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 822
AatII GACGTC 1 cut(s) 52
AccI GTMKAC 2 cut(s) 52, 988
AccII CGCG 1 cut(s) 1231
AciI CCGC 5 cut(s) 889, 893, 959, 1231, 2040
AclI AACGTT 2 cut(s) 762, 1736
AclWI GGATC 2 cut(s) 120, 997
AcoI YGGCCR 1 cut(s) 1490
AcsI RAATTY 4 cut(s) 386, 840, 1221, 1800
AcuI CTGAAG 2 cut(s) 186, 573
AcyI GRCGYC 2 cut(s) 49, 61
AfaI GTAC 2 cut(s) 29, 1604
AflII CTTAAG 1 cut(s) 1102
AflIII ACRYGT 3 cut(s) 851, 1452, 1683
AhdI GACNNNNNGTC 2 cut(s) 200, 318
AjnI CCWGG 3 cut(s) 450, 651, 743
Alw21I GWGCWC 1 cut(s) 1520
Alw26I GTCTC 4 cut(s) 137, 293, 511, 2034
Alw44I GTGCAC 1 cut(s) 1516
AlwI GGATC 2 cut(s) 120, 997
Ama87I CYCGRG 2 cut(s) 861, 1778
AoxI GGCC 2 cut(s) 453, 1490
ApaLI GTGCAC 1 cut(s) 1516
ApeKI GCWGC 3 cut(s) 134, 1783, 1791
ApoI RAATTY 4 cut(s) 386, 840, 1221, 1800
AseI ATTAAT 1 cut(s) 659
Asp700I GAANNNNTTC 2 cut(s) 660, 1593
AspLEI GCGC 1 cut(s) 1231
AsuHPI GGTGA 6 cut(s) 194, 974, 1487, 1902, 1945, 2000
AvaI CYCGRG 2 cut(s) 861, 1778
BaeGI GKGCMC 1 cut(s) 1520
BalI TGGCCA 1 cut(s) 1492
BbsI GAAGAC 2 cut(s) 1730, 1856
Bbv12I GWGCWC 1 cut(s) 1520
BbvI GCAGC 3 cut(s) 121, 1795, 1803
BccI CCATC 7 cut(s) 949, 1363, 1379, 1615, 1639, 1702, 1742
BceAI ACGGC 1 cut(s) 717
BcgI CGANNNNNNTGC 4 cut(s) 218, 252, 1841, 1875
BciT130I CCWGG 3 cut(s) 452, 653, 745
BciVI GTATCC 1 cut(s) 741
BcoDI GTCTC 4 cut(s) 137, 293, 511, 2034
BfaI CTAG 2 cut(s) 1580, 1839
BfmI CTRYAG 2 cut(s) 85, 107
BfrI CTTAAG 1 cut(s) 1102
BfuI GTATCC 1 cut(s) 741
BglII AGATCT 1 cut(s) 1524
BisI GCNGC 4 cut(s) 135, 1232, 1784, 1792
BlpI GCTNAGC 1 cut(s) 1787
BlsI GCNGC 4 cut(s) 136, 1233, 1785, 1793
Bme1390I CCNGG 3 cut(s) 452, 653, 745
BmeRI GACNNNNNGTC 2 cut(s) 200, 318
BmeT110I CYCGRG 2 cut(s) 861, 1778
BmrFI CCNGG 3 cut(s) 452, 653, 745
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 4 cut(s) 876, 1087, 1312, 1641
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 2 cut(s) 1730, 1856
Bpu1102I GCTNAGC 1 cut(s) 1787
Bsa29I ATCGAT 1 cut(s) 2096
BsaBI GATNNNNATC 1 cut(s) 1625
BsaHI GRCGYC 2 cut(s) 49, 61
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 2 cut(s) 440, 1428
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 1697
Bse8I GATNNNNATC 1 cut(s) 1625
BseBI CCWGG 3 cut(s) 452, 653, 745
BseCI ATCGAT 1 cut(s) 2096
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 5 cut(s) 436, 474, 784, 1327, 1631
BseJI GATNNNNATC 1 cut(s) 1625
BseMI GCAATG 1 cut(s) 1697
BseMII CTCAG 3 cut(s) 1126, 2004, 2045
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 2 cut(s) 371, 558
BseSI GKGCMC 1 cut(s) 1520
BseXI GCAGC 3 cut(s) 121, 1795, 1803
BseYI CCCAGC 2 cut(s) 685, 1759
Bsh1236I CGCG 1 cut(s) 1231
BshFI GGCC 2 cut(s) 455, 1492
BshVI ATCGAT 1 cut(s) 2096
BsiHKAI GWGCWC 1 cut(s) 1520
BsiHKCI CYCGRG 2 cut(s) 861, 1778
BsiSI CCGG 2 cut(s) 441, 1429
BslFI GGGAC 2 cut(s) 72, 828
BsmAI GTCTC 4 cut(s) 137, 293, 511, 2034
BsmBI CGTCTC 1 cut(s) 137
BsmFI GGGAC 2 cut(s) 72, 828
BsmI GAATGC 2 cut(s) 1404, 2068
BsnI GGCC 2 cut(s) 455, 1492
BsoBI CYCGRG 2 cut(s) 861, 1778
Bsp1286I GDGCHC 1 cut(s) 1520
Bsp1407I TGTACA 1 cut(s) 1602
Bsp143I GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
Bsp1720I GCTNAGC 1 cut(s) 1787
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 5 cut(s) 889, 893, 959, 1231, 2040
BspANI GGCC 2 cut(s) 455, 1492
BspCNI CTCAG 3 cut(s) 1125, 2005, 2044
BspDI ATCGAT 1 cut(s) 2096
BspFNI CGCG 1 cut(s) 1231
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 2 cut(s) 120, 997
BspQI GCTCTTC 1 cut(s) 718
BspTI CTTAAG 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 1697
BsrGI TGTACA 1 cut(s) 1602
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
BssNAI GTATAC 1 cut(s) 989
BssNI GRCGYC 2 cut(s) 49, 61
BssT1I CCWWGG 1 cut(s) 292
Bst1107I GTATAC 1 cut(s) 989
Bst2UI CCWGG 3 cut(s) 452, 653, 745
Bst4CI ACNGT 9 cut(s) 223, 372, 603, 1051, 1203, 1306, 1376, 1393, 1918
Bst6I CTCTTC 3 cut(s) 718, 1125, 1716
BstACI GRCGYC 2 cut(s) 49, 61
BstAFI CTTAAG 1 cut(s) 1102
BstAPI GCANNNNNTGC 1 cut(s) 1322
BstAUI TGTACA 1 cut(s) 1602
BstC8I GCNNGC 5 cut(s) 585, 730, 891, 1757, 2005
BstDEI CTNAG 8 cut(s) 1112, 1521, 1744, 1787, 1795, 1805, 2013, 2031
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 5 cut(s) 436, 474, 784, 1327, 1631
BstFNI CGCG 1 cut(s) 1231
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 7 cut(s) 115, 234, 985, 1005, 1408, 1447, 1527
BstMAI GTCTC 4 cut(s) 137, 293, 511, 2034
BstMBI GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
BstMWI GCNNNNNNNGC 2 cut(s) 1322, 1699
BstNI CCWGG 3 cut(s) 452, 653, 745
BstNSI RCATGY 4 cut(s) 855, 1456, 1687, 1759
BstSCI CCNGG 3 cut(s) 450, 651, 743
BstSFI CTRYAG 2 cut(s) 85, 107
BstSLI GKGCMC 1 cut(s) 1520
BstUI CGCG 1 cut(s) 1231
BstV1I GCAGC 3 cut(s) 121, 1795, 1803
BstV2I GAAGAC 2 cut(s) 1730, 1856
BstX2I RGATCY 1 cut(s) 1524
BstYI RGATCY 1 cut(s) 1524
BstZ17I GTATAC 1 cut(s) 989
Bsu15I ATCGAT 1 cut(s) 2096
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 2 cut(s) 455, 1492
BsuTUI ATCGAT 1 cut(s) 2096
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 5 cut(s) 436, 474, 784, 1327, 1631
BtsI GCAGTG 2 cut(s) 82, 234
BtsIMutI CAGTG 5 cut(s) 82, 228, 234, 1311, 1381
Cac8I GCNNGC 5 cut(s) 585, 730, 891, 1757, 2005
CfoI GCGC 1 cut(s) 1231
ClaI ATCGAT 1 cut(s) 2096
CseI GACGC 2 cut(s) 69, 1735
Csp6I GTAC 2 cut(s) 28, 1603
CspCI CAANNNNNGTGG 1 cut(s) 38
CviQI GTAC 2 cut(s) 28, 1603
DdeI CTNAG 8 cut(s) 1112, 1521, 1744, 1787, 1795, 1805, 2013, 2031
DpnI GATC 7 cut(s) 114, 233, 984, 1004, 1407, 1446, 1526
DpnII GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
DraI TTTAAA 3 cut(s) 921, 1065, 1293
DrdI GACNNNNNNGTC 1 cut(s) 822
DriI GACNNNNNGTC 2 cut(s) 200, 318
DseDI GACNNNNNNGTC 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 1490
Eam1104I CTCTTC 3 cut(s) 718, 1125, 1716
Eam1105I GACNNNNNGTC 2 cut(s) 200, 318
EarI CTCTTC 3 cut(s) 718, 1125, 1716
EciI GGCGGA 1 cut(s) 908
Eco130I CCWWGG 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 186, 573
Eco88I CYCGRG 2 cut(s) 861, 1778
EcoRII CCWGG 3 cut(s) 450, 651, 743
EcoT14I CCWWGG 1 cut(s) 292
EcoT22I ATGCAT 2 cut(s) 1327, 1404
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 1490, 1522
FaqI GGGAC 2 cut(s) 72, 828
FauI CCCGC 2 cut(s) 882, 952
FblI GTMKAC 2 cut(s) 52, 988
Fnu4HI GCNGC 4 cut(s) 135, 1232, 1784, 1792
FokI GGATG 5 cut(s) 443, 481, 791, 1334, 1618
Fsp4HI GCNGC 4 cut(s) 135, 1232, 1784, 1792
FspBI CTAG 2 cut(s) 1580, 1839
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 4 cut(s) 135, 1232, 1784, 1792
GsaI CCCAGC 2 cut(s) 689, 1763
HaeIII GGCC 2 cut(s) 455, 1492
HapII CCGG 2 cut(s) 441, 1429
HgaI GACGC 2 cut(s) 69, 1735
HhaI GCGC 1 cut(s) 1231
Hin1I GRCGYC 2 cut(s) 49, 61
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HindIII AAGCTT 2 cut(s) 585, 1927
HinfI GANTC 6 cut(s) 461, 1110, 1133, 1331, 1355, 1858
HpaII CCGG 2 cut(s) 441, 1429
HphI GGTGA 6 cut(s) 194, 974, 1487, 1902, 1945, 2000
Hpy166II GTNNAC 6 cut(s) 53, 226, 577, 849, 989, 1518
Hpy188III TCNNGA 7 cut(s) 647, 701, 788, 863, 1580, 1618, 1670
Hpy8I GTNNAC 6 cut(s) 53, 226, 577, 849, 989, 1518
HpyAV CCTTC 4 cut(s) 412, 1110, 1979, 2081
HpyCH4III ACNGT 9 cut(s) 223, 372, 603, 1051, 1203, 1306, 1376, 1393, 1918
HpyCH4IV ACGT 4 cut(s) 49, 696, 762, 1736
HpyF10VI GCNNNNNNNGC 2 cut(s) 1322, 1699
HpyF3I CTNAG 8 cut(s) 1112, 1521, 1744, 1787, 1795, 1805, 2013, 2031
HpySE526I ACGT 4 cut(s) 49, 696, 762, 1736
Hsp92I GRCGYC 2 cut(s) 49, 61
HspAI GCGC 1 cut(s) 1229
Kzo9I GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 1 cut(s) 1192
Lsp1109I GCAGC 3 cut(s) 121, 1795, 1803
LweI GCATC 4 cut(s) 876, 1087, 1312, 1641
MaeI CTAG 2 cut(s) 1580, 1839
MaeII ACGT 4 cut(s) 49, 696, 762, 1736
MaeIII GTNAC 3 cut(s) 433, 1045, 1169
MalI GATC 7 cut(s) 114, 233, 984, 1004, 1407, 1446, 1526
MboI GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
MfeI CAATTG 1 cut(s) 1853
MflI RGATCY 1 cut(s) 1524
MhlI GDGCHC 1 cut(s) 1520
MlsI TGGCCA 1 cut(s) 1492
MluNI TGGCCA 1 cut(s) 1492
MlyI GAGTC 3 cut(s) 1104, 1142, 1852
MmeI TCCRAC 2 cut(s) 25, 1659
Mox20I TGGCCA 1 cut(s) 1492
Mph1103I ATGCAT 2 cut(s) 1327, 1404
MroXI GAANNNNTTC 2 cut(s) 660, 1593
MscI TGGCCA 1 cut(s) 1492
MslI CAYNNNNRTG 1 cut(s) 1688
Msp20I TGGCCA 1 cut(s) 1492
MspA1I CMGCKG 1 cut(s) 2081
MspCI CTTAAG 1 cut(s) 1102
MspI CCGG 2 cut(s) 441, 1429
MspR9I CCNGG 3 cut(s) 452, 653, 745
MunI CAATTG 1 cut(s) 1853
Mva1269I GAATGC 2 cut(s) 1404, 2068
MvaI CCWGG 3 cut(s) 452, 653, 745
MvnI CGCG 1 cut(s) 1231
MwoI GCNNNNNNNGC 2 cut(s) 1322, 1699
NcoI CCATGG 1 cut(s) 292
NdeII GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
NmuCI GTSAC 1 cut(s) 1045
NsiI ATGCAT 2 cut(s) 1327, 1404
NspI RCATGY 4 cut(s) 855, 1456, 1687, 1759
PaeI GCATGC 1 cut(s) 1759
PaeR7I CTCGAG 1 cut(s) 861
PceI AGGCCT 1 cut(s) 455
PciI ACATGT 3 cut(s) 851, 1452, 1683
PciSI GCTCTTC 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 1733
PctI GAATGC 2 cut(s) 1404, 2068
PdmI GAANNNNTTC 2 cut(s) 660, 1593
PfeI GAWTC 3 cut(s) 461, 1331, 1355
PkrI GCNGC 4 cut(s) 136, 1233, 1785, 1793
PleI GAGTC 3 cut(s) 1104, 1141, 1852
PpsI GAGTC 3 cut(s) 1104, 1141, 1852
PscI ACATGT 3 cut(s) 851, 1452, 1683
PshBI ATTAAT 1 cut(s) 659
Psp1406I AACGTT 2 cut(s) 762, 1736
Psp6I CCWGG 3 cut(s) 450, 651, 743
PspFI CCCAGC 2 cut(s) 685, 1759
PspGI CCWGG 3 cut(s) 450, 651, 743
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 1524
PvuII CAGCTG 1 cut(s) 2081
RsaI GTAC 2 cut(s) 29, 1604
RsaNI GTAC 2 cut(s) 28, 1603
RseI CAYNNNNRTG 1 cut(s) 1688
SapI GCTCTTC 1 cut(s) 718
SatI GCNGC 4 cut(s) 135, 1232, 1784, 1792
Sau3AI GATC 7 cut(s) 112, 231, 982, 1002, 1405, 1444, 1524
SchI GAGTC 3 cut(s) 1104, 1142, 1852
ScrFI CCNGG 3 cut(s) 452, 653, 745
SduI GDGCHC 1 cut(s) 1520
SfaNI GCATC 4 cut(s) 876, 1087, 1312, 1641
SfcI CTRYAG 2 cut(s) 85, 107
Sfr274I CTCGAG 1 cut(s) 861
SlaI CTCGAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 1688
SmlI CTYRAG 2 cut(s) 861, 1102
SmoI CTYRAG 2 cut(s) 861, 1102
SphI GCATGC 1 cut(s) 1759
SseBI AGGCCT 1 cut(s) 455
SsiI CCGC 5 cut(s) 889, 893, 959, 1231, 2040
SspI AATATT 1 cut(s) 1546
SspMI CTAG 2 cut(s) 1580, 1839
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 3 cut(s) 450, 651, 743
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 9 cut(s) 223, 372, 603, 1051, 1203, 1306, 1376, 1393, 1918
TaiI ACGT 4 cut(s) 52, 699, 765, 1739
TaqI TCGA 4 cut(s) 204, 862, 1619, 2096
TatI WGTACW 1 cut(s) 1602
TauI GCSGC 1 cut(s) 1234
TfiI GAWTC 3 cut(s) 461, 1331, 1355
TscAI CASTG 5 cut(s) 89, 228, 241, 1311, 1381
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 3 cut(s) 134, 1783, 1791
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 2 cut(s) 723, 869
TspGWI ACGGA 4 cut(s) 260, 308, 430, 735
TspRI CASTG 5 cut(s) 89, 228, 241, 1311, 1381
Vha464I CTTAAG 1 cut(s) 1102
VneI GTGCAC 1 cut(s) 1516
VspI ATTAAT 1 cut(s) 659
XapI RAATTY 4 cut(s) 386, 840, 1221, 1800
XbaI TCTAGA 1 cut(s) 1579
XceI RCATGY 4 cut(s) 855, 1456, 1687, 1759
XcmI CCANNNNNNNNNTGG 1 cut(s) 401
XhoI CTCGAG 1 cut(s) 861
XmiI GTMKAC 2 cut(s) 52, 988
XmnI GAANNNNTTC 2 cut(s) 660, 1593
XspI CTAG 2 cut(s) 1580, 1839
ZraI GACGTC 1 cut(s) 50
Zsp2I ATGCAT 2 cut(s) 1327, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.