Rroxscaffold_5G00342580

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000042
Physical Location & Seq
Reverse (-)
11546850 .. 11553383
6534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342580.1

Sequence Viewer

Length: 957 bp
ATGCATGTGTCCGTCCGGCCGTCACTTAATGAGTTGAGGGTGGTAAAATGTGCTAAAGTCAAAGTGTTTGTTGAGGAAATCTCAAATTTTCAAGGACATAATGAGTCGGAACGTCTCGGTGTTCTTCTCCCGCAGTCTCTCTTTTTAATTGAGAAGGATTCATTTCCCAAATTGGAATGTTTGAGCGTGAATGCAACGGAGTTTTCGAATGGTCCACTCCCAGCAGCAGCGCAGTTGTTTAGCAAACTAAAGGATCTGGATGTTTGTTGTCCCGAGTCCAAGTCAGTTGTTTTCCTTGACAAATTACTCGACCCGGAAGACCCGGAAGGAAACAGTGCAGTTGGGATTGGGACCCAGCAGCTCCCACATTTAAAAGAGTTGTGGCTTATTCGAATGGAGAAGCTGATGCATCTAGGCCAGGATGATGAGGAGGATAACTCACAATCAGCCCCCCGCATCCCAAATTTTCCAAACCTGCAAATTCTACACGTGAATGGTTGTGACAGTTTAAGGAATCTGAGATCATCCGCAATATCCTTCAACAATCTAACAAGTTTGCGAGTAAGTGTTTGCAAGGGATTGAAATACTTGATGACTTACTCCATGGCCAAGAGTTTAATGCAACTCACAAAACTGGAAGTCGAGGAGTGCCCAAGACTGGTGGAAATAGTGGGAAGCAATGAAGACGACGATTCAAGACATGAGATTACATTCAGGCGGTTGAAACATCTGAAACTATCTTCTCTACCAAGACTGCAACGCTTTTGCTCGGGAAATTGCATTGCTAAATTCCCGTCCTTGGAAACTTCAAGCATGAGCAACCGCCTCAAGTTGAAGATTTTCCCAGCTCATGACCAAACGCTACAGCAAACCAACGAAGAGGAAGACACAGATGTCGATGCTTGGGAGAAGTGGCTGACTGCTGATGATAAACGGAATTTGGCAAGTACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

318

Amino Acids

35.95

Weight (kDa)

5.59

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 49 - 174 1.9e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 178 - 282 2.1e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 483
AciI CCGC 5 cut(s) 131, 454, 528, 718, 823
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 2 cut(s) 17, 606
AcsI RAATTY 5 cut(s) 85, 463, 480, 788, 937
AcvI CACGTG 1 cut(s) 490
AfaI GTAC 1 cut(s) 949
AfiI CCNNNNNNNGG 2 cut(s) 658, 799
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 7 cut(s) 92, 541, 583, 696, 724, 810, 835
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 3 cut(s) 361, 403, 848
AluI AGCT 3 cut(s) 361, 403, 848
Alw26I GTCTC 2 cut(s) 119, 141
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 2 cut(s) 272, 769
AoxI GGCC 3 cut(s) 17, 415, 606
ApeKI GCWGC 3 cut(s) 224, 227, 358
ApoI RAATTY 5 cut(s) 85, 463, 480, 788, 937
Asp700I GAANNNNTTC 1 cut(s) 839
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 2 cut(s) 212, 351
AsuC2I CCSGG 2 cut(s) 314, 323
AsuII TTCGAA 2 cut(s) 206, 391
AvaI CYCGRG 2 cut(s) 272, 769
AvaII GGWCC 2 cut(s) 212, 351
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 608
BbrPI CACGTG 1 cut(s) 490
BbsI GAAGAC 3 cut(s) 324, 690, 891
BbvI GCAGC 3 cut(s) 236, 239, 370
BceAI ACGGC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 419
BcnI CCSGG 2 cut(s) 314, 323
BcoDI GTCTC 2 cut(s) 119, 141
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 863
BfuAI ACCTGC 1 cut(s) 483
BisI GCNGC 3 cut(s) 225, 228, 359
BlsI GCNGC 3 cut(s) 226, 229, 360
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 3 cut(s) 314, 323, 419
Bme18I GGWCC 2 cut(s) 212, 351
BmeT110I CYCGRG 2 cut(s) 272, 769
BmgT120I GGNCC 2 cut(s) 212, 351
BmiI GGNNCC 2 cut(s) 352, 353
BmrFI CCNGG 3 cut(s) 314, 323, 419
BmsI GCATC 4 cut(s) 396, 418, 465, 889
BpiI GAAGAC 3 cut(s) 324, 690, 891
BplI GAGNNNNNCTC 4 cut(s) 65, 97, 422, 454
Bpu14I TTCGAA 2 cut(s) 206, 391
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 2 cut(s) 314, 323
BsaAI YACGTR 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 603, 798
Bsc4I CCNNNNNNNGG 2 cut(s) 658, 799
Bse1I ACTGG 2 cut(s) 639, 663
Bse3DI GCAATG 2 cut(s) 685, 780
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 603, 798
BseGI GGATG 4 cut(s) 265, 427, 456, 524
BseLI CCNNNNNNNGG 2 cut(s) 658, 799
BseMI GCAATG 2 cut(s) 685, 780
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 639, 663
BseRI GAGGAG 2 cut(s) 443, 659
BseSI GKGCMC 1 cut(s) 653
BseX3I CGGCCG 1 cut(s) 17
BseXI GCAGC 3 cut(s) 236, 239, 370
BseYI CCCAGC 3 cut(s) 220, 354, 844
BsgI GTGCAG 1 cut(s) 357
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 19, 417, 608
BsiEI CGRYCG 1 cut(s) 20
BsiHKCI CYCGRG 2 cut(s) 272, 769
BsiSI CCGG 3 cut(s) 16, 314, 323
BslFI GGGAC 2 cut(s) 255, 364
BslI CCNNNNNNNGG 2 cut(s) 658, 799
BsmAI GTCTC 2 cut(s) 119, 141
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 255, 364
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 3 cut(s) 19, 417, 608
BsoBI CYCGRG 2 cut(s) 272, 769
Bsp119I TTCGAA 2 cut(s) 206, 391
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 253, 521
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 5 cut(s) 131, 454, 528, 718, 823
BspANI GGCC 3 cut(s) 19, 417, 608
BspCNI CTCAG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 352, 353
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 261
BspT104I TTCGAA 2 cut(s) 206, 391
BsrDI GCAATG 2 cut(s) 685, 780
BsrI ACTGG 2 cut(s) 639, 663
BssECI CCNNGG 2 cut(s) 603, 798
BssMI GATC 2 cut(s) 253, 521
BssT1I CCWWGG 2 cut(s) 603, 798
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 2 cut(s) 335, 506
Bst6I CTCTTC 1 cut(s) 873
BstBAI YACGTR 1 cut(s) 490
BstBI TTCGAA 2 cut(s) 206, 391
BstDEI CTNAG 1 cut(s) 518
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 4 cut(s) 265, 427, 456, 524
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 256, 524
BstMAI GTCTC 2 cut(s) 119, 141
BstMBI GATC 2 cut(s) 253, 521
BstMCI CGRYCG 1 cut(s) 20
BstNI CCWGG 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 3 cut(s) 312, 321, 417
BstSFI CTRYAG 1 cut(s) 863
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 3 cut(s) 236, 239, 370
BstV2I GAAGAC 3 cut(s) 324, 690, 891
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BstZI CGGCCG 1 cut(s) 17
BsuRI GGCC 3 cut(s) 19, 417, 608
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 4 cut(s) 265, 427, 456, 524
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 483
CciI TCATGA 1 cut(s) 850
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 212, 351
Csp6I GTAC 1 cut(s) 948
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 5 cut(s) 5, 604, 701, 814, 851
CviJI RGCY 9 cut(s) 19, 361, 385, 403, 417, 449, 608, 848, 916
CviKI_1 RGCY 9 cut(s) 19, 361, 385, 403, 417, 449, 608, 848, 916
CviQI GTAC 1 cut(s) 948
DdeI CTNAG 1 cut(s) 518
DpnI GATC 2 cut(s) 255, 523
DpnII GATC 2 cut(s) 253, 521
DraI TTTAAA 1 cut(s) 372
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 2 cut(s) 17, 606
EagI CGGCCG 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
EclXI CGGCCG 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 603, 798
Eco47I GGWCC 2 cut(s) 212, 351
Eco52I CGGCCG 1 cut(s) 17
Eco72I CACGTG 1 cut(s) 490
Eco88I CYCGRG 2 cut(s) 272, 769
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 2 cut(s) 603, 798
EcoT22I ATGCAT 2 cut(s) 6, 411
ErhI CCWWGG 2 cut(s) 603, 798
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 5 cut(s) 8, 607, 704, 817, 854
FaiI YATR 6 cut(s) 6, 99, 605, 702, 815, 852
FaqI GGGAC 2 cut(s) 255, 364
FatI CATG 5 cut(s) 4, 603, 700, 813, 850
FauI CCCGC 2 cut(s) 138, 461
Fnu4HI GCNGC 3 cut(s) 225, 228, 359
FokI GGATG 4 cut(s) 272, 434, 443, 511
Fsp4HI GCNGC 3 cut(s) 225, 228, 359
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 231
GluI GCNGC 3 cut(s) 225, 228, 359
GsaI CCCAGC 3 cut(s) 224, 358, 848
HaeIII GGCC 3 cut(s) 19, 417, 608
HapII CCGG 3 cut(s) 16, 314, 323
HhaI GCGC 1 cut(s) 232
Hin1II CATG 5 cut(s) 8, 607, 704, 817, 854
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 5 cut(s) 104, 158, 275, 514, 692
HpaII CCGG 3 cut(s) 16, 314, 323
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 109, 519, 732
Hpy188III TCNNGA 5 cut(s) 257, 272, 696, 771, 851
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 148, 320, 547
HpyCH4III ACNGT 2 cut(s) 335, 506
HpyCH4IV ACGT 2 cut(s) 112, 489
HpyCH4V TGCA 9 cut(s) 4, 194, 338, 409, 478, 573, 622, 757, 780
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 2 cut(s) 112, 489
Hsp92II CATG 5 cut(s) 8, 607, 704, 817, 854
HspAI GCGC 1 cut(s) 230
KflI GGGWCCC 1 cut(s) 351
Kzo9I GATC 2 cut(s) 253, 521
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 3 cut(s) 236, 239, 370
LweI GCATC 4 cut(s) 396, 418, 465, 889
MaeI CTAG 1 cut(s) 413
MaeII ACGT 2 cut(s) 112, 489
MaeIII GTNAC 2 cut(s) 21, 500
MalI GATC 2 cut(s) 255, 523
MboI GATC 2 cut(s) 253, 521
MboII GAAGA 7 cut(s) 116, 329, 695, 732, 847, 890, 896
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 653
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 9 cut(s) 85, 147, 170, 302, 463, 480, 775, 788, 937
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 2 cut(s) 113, 284
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 7 cut(s) 30, 67, 421, 424, 637, 836, 874
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 2 cut(s) 6, 411
MroXI GAANNNNTTC 1 cut(s) 839
MscI TGGCCA 1 cut(s) 608
MseI TTAA 5 cut(s) 27, 146, 371, 509, 617
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 3 cut(s) 16, 314, 323
MspR9I CCNGG 3 cut(s) 314, 323, 419
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 419
NciI CCSGG 2 cut(s) 314, 323
NcoI CCATGG 1 cut(s) 603
NdeII GATC 2 cut(s) 253, 521
NlaIII CATG 5 cut(s) 8, 607, 704, 817, 854
NlaIV GGNNCC 2 cut(s) 352, 353
NmuCI GTSAC 2 cut(s) 21, 500
NsiI ATGCAT 2 cut(s) 6, 411
NspI RCATGY 1 cut(s) 8
NspV TTCGAA 2 cut(s) 206, 391
PagI TCATGA 1 cut(s) 850
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PctI GAATGC 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 839
PfeI GAWTC 3 cut(s) 158, 514, 692
PkrI GCNGC 3 cut(s) 226, 229, 360
PleI GAGTC 2 cut(s) 112, 283
PmaCI CACGTG 1 cut(s) 490
PmlI CACGTG 1 cut(s) 490
PpsI GAGTC 2 cut(s) 112, 283
Ppu21I YACGTR 1 cut(s) 490
PpuMI RGGWCCY 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 417
PspCI CACGTG 1 cut(s) 490
PspFI CCCAGC 3 cut(s) 220, 354, 844
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 2 cut(s) 352, 353
PspPI GGNCC 2 cut(s) 212, 351
PspPPI RGGWCCY 1 cut(s) 351
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 949
RsaNI GTAC 1 cut(s) 948
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 5 cut(s) 27, 146, 371, 509, 617
SatI GCNGC 3 cut(s) 225, 228, 359
Sau3AI GATC 2 cut(s) 253, 521
Sau96I GGNCC 2 cut(s) 212, 351
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 2 cut(s) 113, 284
ScrFI CCNGG 3 cut(s) 314, 323, 419
SduI GDGCHC 1 cut(s) 653
SetI ASST 6 cut(s) 115, 363, 405, 477, 492, 850
SfaNI GCATC 4 cut(s) 396, 418, 465, 889
SfcI CTRYAG 1 cut(s) 863
SfuI TTCGAA 2 cut(s) 206, 391
SinI GGWCC 2 cut(s) 212, 351
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 9 cut(s) 85, 147, 170, 302, 463, 480, 775, 788, 937
SsiI CCGC 5 cut(s) 131, 454, 528, 718, 823
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 3 cut(s) 312, 321, 417
StyI CCWWGG 2 cut(s) 603, 798
TaaI ACNGT 2 cut(s) 335, 506
TaiI ACGT 2 cut(s) 115, 492
TaqI TCGA 5 cut(s) 206, 309, 391, 642, 897
TasI AATT 9 cut(s) 85, 147, 170, 302, 463, 480, 775, 788, 937
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 3 cut(s) 158, 514, 692
Tru1I TTAA 5 cut(s) 27, 146, 371, 509, 617
Tru9I TTAA 5 cut(s) 27, 146, 371, 509, 617
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 21, 500
TseI GCWGC 3 cut(s) 224, 227, 358
Tsp45I GTSAC 2 cut(s) 21, 500
TspDTI ATGAA 2 cut(s) 150, 696
TspGWI ACGGA 2 cut(s) 212, 949
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 212, 351
XapI RAATTY 5 cut(s) 85, 463, 480, 788, 937
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 839
XspI CTAG 1 cut(s) 413
ZrmI AGTACT 1 cut(s) 949
Zsp2I ATGCAT 2 cut(s) 6, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.