Rh2DG007500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000042
Physical Location & Seq
Forward (+)
438411 .. 451682
13272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG007500.1

Sequence Viewer

Length: 3663 bp
ATGGATTTTCTCTCTGCAATTGGTAGTGCCATTGTTGAACCAATTGTCCGGCACACGGTTCAAGCTGTTGCACGCCAAGTGGGTTATGTTATTCACTTCAAGAGCAACCTTCAAAAACTGGAGGCTCGAGTGGAAGAATTGAGAGCTGCTAGAGAGGGGGAAAACATTGAGGTTGCTGAAACTCAAAGAAAAGGTGAAGGAATCCACCCAGATGTCCATTTGTGGCTGACAAAAGTGGAGGAGATCACTGCAAAGACTGACCAATTCCTGAAAGATGAATGCAGCCAAGAAAATCTGAAATGCCTGCATGGGTTTTGCCCTAATCTGACCATGCGTCGTCGGCTGAGCAGGAATTCTACAAAGCTGTTGCAGGAGGTTGTTGAACTACATGAAAAAAGAAGGCAGCTTCCCAAAGTTTCATGCGGTGTCCTCCGCGAAGAGGCGTGCATCATATCTACTGGAGATTACCTGGCCTTTCAATCAAGGATGTCAACTGTGAAGGAAATCATGGATGAACTGAAGAATCCTAAAACCATCAGGATCGGGGTGTACGGAATTGGAGGCGTCGGTAAAACCACACTTGTCAAAGAAGCGTATAGGCAAGCTAAACAAGATCAGACCAAGTTATTTGATGATGTGGTTTTAGTCCTCGATGTGAAAAAGAATCCAGACCCGGAAGATCTTCAGAAGAAAATTGTTGAAAAATTGGACATGAAGATTAGTCAAAGTGATGATGAGACTATAGACGGAAGGGCGAAGCGTCTATGTGGCAGGATAAAGGACAAAAATGTTCTTGTAATTCTGGACGATGTTTGGGAACCAATTGACTTGGAGTCTATTGGACTTCCTAGCGTGGCTACTTGTAAGATAATGCTGACTTCTAGAAGTAGAAAAGCATTGTCTGATATGGGTACGCATAAAGATTTTCAGCTTCACATTTTAGGAGAAGAAGAGACTTGGGTTTTATTTGAGAACAAGGCAGGTGATGTTGTTAAGGATCCTTCTATACAAACAGTAGCAAAACAAGTAGCCCAAAAATGTGGAGGTCTGCCTGTTTTGGTTGTCACAGTGGCAAGCGCTTTAAAGAATAGAACCACTCTACCTCCATGGAAAGACGCTTTGACATGCCTGCAAGAAGGGTCTGACAGAGATGTCGAATTGACAGAAAAGGCATACTTGGGTCTAGAGTGGAGTTACAATCAGTTGACTGATAAGCAACTGAAGCCATTGTTCTTGTTATGTGGATATGCTGGGCAGTGGAATGATATTTTTTTGGACGACTTGTTGTACTATGCAGTGGGTTTGGGTTTTTTTGAAAAGCCCTACACAGTGGAGACAGCACGAAATGCATTGTATTCGTGGGTTGAAAAACTCAAAGACTTTTGCCTGTTGGTAGATAGCGATGATGATGGATATGTCACAATGCATGACCTTGTACGCAATGCTGCTAACCGGATTGCGTCCAGAGATCCCCAGATATTAGCATTAGTGAAAGATGAAGATGAGGGTGGGTTGAAAGAATGGCCAGATAAAAGTTTCTTAGAGAAGTGCACAATCATCTCTTTGCATTGTGACCGCTATTTCCCAATGCTTCCTCAAGTTATGCAATGCCCAGCTCTAAGAATGTTTGGGTTGATGGGTAATTCTAAACCGCTGGCACCACTGGCACCGCTGGCAATATCCCCAGGATTATTTGAAGGGATGAAACAACTCAATGTTTTGAGTTGGATAAACATGAATATAGGGGCTCTACCTCAATCTCTTCGGTTCCTAGAGAATCTTCAGACACTGTGTTTAATAGGATGCACATTGGAAGACATATCTCTCGTTGGGCAGTTAAGAAACTTAGAAATTCTAAGTTTTGAAGGTTCTGATGTTCAACATCTGCCCCAAGAAATAGGGCAACTGGCTCATCTGCGGTTGTTGGATCTATCCAACTGCTATAGACTTGAAGTGATCTCGCCTGGTGTTATATCAAGCTTGACAAGACTGGAATACTTGACAATGAGAGAAAGCTTTAACAATTGGGTGACTGAAGGTGAAAGAAGCAACGCTAGCCTATCAGAGCTGGAGCATTTGTCTCATTTAAATACATTAGAAATACATGTTCCCGATGCAGACCTTCTTCCAGCAAACCTTTTCTCCCTGAAGCTAGAAAGATTTCAAATCATGATTGGTGAAACATGGGCGTGGGACGAGCATGAGCATGCACGTGAGGATGAGGATGAGGATGAGGATGAGGATGAGGATGAGGATGGGGATGAGGATGGGGATGAGGATGACGATGACGAAGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAAGAGGATCAGGAGGATTATAAGCACTCCCTCAACAGACTGAAACTCCAGCTCACTACAAGCATTGAGTTGAACCAAGGTCTAAGAAAGTTGCTGAAGATATGCCATGATTTGTCCCTGTATGGGACAGAGAGTGTTAATCATATTGTCCACCAATTTGATAATGAAGAATTTCAGCAACTGAAGCATCTCTGTGTCCGAAACAATGTCGACTTTATCATTACCAAGAAGGTTATGTTGCCGAACTTAAAGACTTTGGTGATACATGAGTGTGATGATATAAGATTCCTGTTCACCTTTTCTGTGGCTAGAAGTCTTGTACAACTCAAATGTTTGAAGATTTCGTCATGTAAACTGTTGGAAGAGATTGTATCATCGACAAGAGAATGCGATGAAGAAAGTATGGGTAAAATGTTTCCCAATCTGAAAGTTTTGAATCTAAAGGGACTCGAAAAGCTGGCTAGATTTTGCATGGGAAGTTATGTTGAATTTCCGTCCTTGAAAGAATTGGATGTAGATGATTGTCCTGAACTGGGGGCTTTCATTTGTGATAATGTTGATACGAGTACGAGCAGTCGAGGGATTATAATCGACAAAGAAACTCATGAGAGAGACTCGAAACAAGAAAAGAACCTTGATGTTAGCAGTGAGACTGTTGTACAGTCCTTCCTCTTTGACGAAAAGGTAGGATTTCCTTGCTTGGAGAATTTGAAAATCAATGGGGTCCTGAAGTTGAAGACAATATGGCACAGCCAACAAGCTCAAGACTCTTTTTGGACACTCAACAACGTTAAAGTTTCCAAATGCGACGCATTAATCAATGTCATTTCGCCTGCTGTCATGGAAAGATTGAATGCTCTGAAAAGCATAGATATAAAGAATTGCAGGTCGCTGGAAGTGGTTTTTGAACTTGGAGGAAGTAATGCACACTTCCAAAATCTTGTTTCTGTATCCGTATGGCGTTGTAACAGATTGAAGAATATTTTTCCAGCCTCAGTGGCCAGAAGTCTTCAACAATTAAGTTGGCTGAGTCTGGGTTTTTGTCATGGAGTGGAGGAAATCGTCGGTGAGGAAGAAGGAGTACTAGAAACACCGTCGTCTCCGCAATTTGTGTTCCCAAAAGTAACATTCATGGAGTTTGAAACCTTGTCCAATCTCAGGAGCTTTTATCCAAGAATGCATACTTCAGAGTGGCCATTACTCCAAACTTTGACGGTCTGTAACTGTAAGGGAGTAAAGACTTTGGTGGCCCAACTTTCATTCTTGCGGGAAAAATACGAGCAGGACCCTCTTATGTCTCCACAATCTCTCTTTCTAGCTGACAAGGTATACATAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1220

Amino Acids

138.72

Weight (kDa)

4.94

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 165 - 328 6.3e-30 NB-ARC domain
LRR_14 PF23598 568 - 709 3e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 851 - 952 1.9e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1009 - 1082 1.6e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1082 - 1122 1.2e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000042)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07760 FvH4_1g18111 FvH4_1g18121 FvH4_1g18142 FvH4_1g18160 FvH4_3g04780 FvH4_3g04780 FvH4_3g04780 FvH4_3g05070 FvH4_3g29991 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06020 FvH4_4g06021 FvH4_4g06022 FvH4_4g10330 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g02660 FvH4_5g05380 FvH4_5g18950 FvH4_5g18991 FvH4_5g18992 FvH4_6g53580 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140 FvH4_7g31140
malus_domestica MD08G1082300.v1.1 MD08G1083200.v1.1 MD08G1083600.v1.1 MD08G1083700.v1.1 MD09G1272000.v1.1 MD09G1272400.v1.1 MD09G1272500.v1.1 MD09G1272700.v1.1 MD09G1272800.v1.1 MD09G1273400.v1.1 MD09G1273700.v1.1 MD09G1274000.v1.1 MD09G1274100.v1.1 MD09G1274200.v1.1 MD09G1274400.v1.1 MD11G1203100.v1.1 MD13G1197600.v1.1 MD15G1069900.v1.1 MD15G1070000.v1.1
prunus_persica Prupe.3G016600_v2.0.a1 Prupe.3G016700_v2.0.a1 Prupe.4G236500_v2.0.a1
pyrus_communis pycom08g06810 pycom08g06820 pycom08g06830 pycom08g06850 pycom08g06860 pycom08g06870 pycom08g06900 pycom08g06910 pycom08g06920 pycom08g06950 pycom09g18250 pycom09g18300 pycom09g18310 pycom09g18340 pycom09g18360 pycom09g18390 pycom09g18410 pycom09g18420 pycom09g18470 pycom09g18510 pycom11g17610 pycom15g06550 pycom15g06560 pycom15g06570 pycom15g06590 pycom15g06600
rosa_chinensis RchiOBHm_Chr1g0356991 RchiOBHm_Chr1g0357001 RchiOBHm_Chr2g0085061 RchiOBHm_Chr2g0085071 RchiOBHm_Chr2g0085111 RchiOBHm_Chr2g0085121 RchiOBHm_Chr2g0108611 RchiOBHm_Chr2g0109281 RchiOBHm_Chr4g0396311 RchiOBHm_Chr4g0397551 RchiOBHm_Chr4g0397781 RchiOBHm_Chr4g0397831 RchiOBHm_Chr4g0397841 RchiOBHm_Chr4g0397871 RchiOBHm_Chr4g0397911 RchiOBHm_Chr4g0397921 RchiOBHm_Chr4g0398201 RchiOBHm_Chr4g0398211 RchiOBHm_Chr4g0408401 RchiOBHm_Chr5g0016101 RchiOBHm_Chr5g0016111 RchiOBHm_Chr5g0016321 RchiOBHm_Chr5g0016331 RchiOBHm_Chr5g0016341 RchiOBHm_Chr5g0016351 RchiOBHm_Chr7g0203341 RchiOBHm_Chr7g0203371 RchiOBHm_Chr7g0203421 RchiOBHm_Chr7g0204211 RchiOBHm_Chr7g0204231 RchiOBHm_Chr7g0236741
rosa_laevigata RLG00000001063 RLG00000009379 RLG00000009397 RLG00000009399 RLG00000009402 RLG00000009403 RLG00000009407 RLG00000009411 RLG00000009429 RLG00000009550 RLG00000009551 RLG00000015657 RLG00000017681 RLG00000028063 RLG00000028065 RLG00000028066 RLG00000032242 RLG00000032245 RLG00000035025 RLG00000035026 RLG00000035027 RLG00000035031
rosa_multiflora Rmu_co7992674.1_g000001 Rmu_co8252071.1_g000001 Rmu_co8481849.1_g000001 Rmu_sc0000166.1_g000026 Rmu_sc0000166.1_g000032 Rmu_sc0000166.1_g000036 Rmu_sc0000299.1_g000001 Rmu_sc0000332.1_g000001 Rmu_sc0000361.1_g000022 Rmu_sc0000361.1_g000023 Rmu_sc0000361.1_g000024 Rmu_sc0000361.1_g000034 Rmu_sc0000361.1_g000053 Rmu_sc0000571.1_g000009 Rmu_sc0000777.1_g000005 Rmu_sc0000777.1_g000013 Rmu_sc0000787.1_g000002 Rmu_sc0000795.1_g000061 Rmu_sc0000795.1_g000068 Rmu_sc0001074.1_g000012 Rmu_sc0001074.1_g000024 Rmu_sc0001196.1_g000010 Rmu_sc0001196.1_g000013 Rmu_sc0001235.1_g000035 Rmu_sc0001320.1_g000009 Rmu_sc0001320.1_g000010 Rmu_sc0001588.1_g000017 Rmu_sc0001779.1_g000028 Rmu_sc0001807.1_g000009 Rmu_sc0001959.1_g000001 Rmu_sc0001959.1_g000003 Rmu_sc0001959.1_g000004 Rmu_sc0001959.1_g000025 Rmu_sc0002148.1_g000007 Rmu_sc0002148.1_g000013 Rmu_sc0002212.1_g000007 Rmu_sc0002321.1_g000015 Rmu_sc0002460.1_g000018 Rmu_sc0002540.1_g000008 Rmu_sc0002647.1_g000001 Rmu_sc0003347.1_g000005 Rmu_sc0003347.1_g000013 Rmu_sc0003582.1_g000009 Rmu_sc0003720.1_g000025 Rmu_sc0004527.1_g000001 Rmu_sc0004557.1_g000001 Rmu_sc0004595.1_g000015 Rmu_sc0004595.1_g000020 Rmu_sc0004834.1_g000001 Rmu_sc0004904.1_g000029 Rmu_sc0005276.1_g000007 Rmu_sc0005276.1_g000008 Rmu_sc0005276.1_g000010 Rmu_sc0005276.1_g000019 Rmu_sc0005506.1_g000016 Rmu_sc0005723.1_g000003 Rmu_sc0005766.1_g000006 Rmu_sc0006749.1_g000001 Rmu_sc0006749.1_g000002 Rmu_sc0006985.1_g000001 Rmu_sc0007032.1_g000011 Rmu_sc0007315.1_g000007 Rmu_sc0007574.1_g000003 Rmu_sc0008179.1_g000001 Rmu_sc0008179.1_g000002 Rmu_sc0008208.1_g000001 Rmu_sc0008647.1_g000014 Rmu_sc0008647.1_g000016 Rmu_sc0009960.1_g000001 Rmu_sc0010313.1_g000013 Rmu_sc0010376.1_g000001 Rmu_sc0012840.1_g000006 Rmu_sc0013807.1_g000003 Rmu_sc0013807.1_g000004 Rmu_sc0013807.1_g000005 Rmu_sc0014155.1_g000001 Rmu_sc0015959.1_g000003 Rmu_sc0015959.1_g000004 Rmu_sc0016628.1_g000001 Rmu_sc0018579.1_g000001 Rmu_sc0019842.1_g000001 Rmu_sc0022243.1_g000001 Rmu_sc0022243.1_g000002 Rmu_sc0023640.1_g000001 Rmu_sc0028411.1_g000001 Rmu_sc0033723.1_g000001 Rmu_sc0038038.1_g000001 Rmu_sc0039543.1_g000001 Rmu_sc0040505.1_g000001 Rmu_sc0043049.1_g000001 Rmu_ssc0000234.1_g000013
rosa_roxburghii Rroxscaffold_1G00024370 Rroxscaffold_1G00024400 Rroxscaffold_1G00024420 Rroxscaffold_1G00039110 Rroxscaffold_1G00060530 Rroxscaffold_1G00060560 Rroxscaffold_2G00132370 Rroxscaffold_2G00134940 Rroxscaffold_2G00134960 Rroxscaffold_2G00155630 Rroxscaffold_3G00253360 Rroxscaffold_3G00253840 Rroxscaffold_3G00253850 Rroxscaffold_4G00299140 Rroxscaffold_4G00299150 Rroxscaffold_5G00341140 Rroxscaffold_5G00341150 Rroxscaffold_5G00342380 Rroxscaffold_5G00342390 Rroxscaffold_5G00342580 Rroxscaffold_5G00342590 Rroxscaffold_5G00342600 Rroxscaffold_5G00342620 Rroxscaffold_5G00342640 Rroxscaffold_5G00342670 Rroxscaffold_5G00342680 Rroxscaffold_5G00342720 Rroxscaffold_5G00342750 Rroxscaffold_5G00342760 Rroxscaffold_5G00342770 Rroxscaffold_5G00342780 Rroxscaffold_5G00342790 Rroxscaffold_5G00342820 Rroxscaffold_5G00342880
rosa_rugosa Rorug01G0064000 Rorug01G0252600 Rorug01G0252700 Rorug01G0252900 Rorug01G0253000 Rorug01G0457800 Rorug02G0154700 Rorug02G0154800 Rorug02G0159000 Rorug03G0342700 Rorug03G0350300 Rorug04G0004400 Rorug05G0031200 Rorug05G0031300 Rorug05G0031400 Rorug05G0031800 Rorug05G0295400 Rorug05G0295500 Rorug07G0075800.1 Rorug07G0075900 Rorug07G0076000
rosa_samantha Rh1AG267100 Rh1BG234600 Rh1BG234800 Rh1BG234900 Rh1CG250500 Rh1CG250900 Rh1CG251100 Rh1DG262000 Rh1DG262200 Rh1DG262300 Rh2AG005800 Rh2AG006000 Rh2AG203700 Rh2AG204000 Rh2AG204400 Rh2AG210500 Rh2AG210600 Rh2BG006700 Rh2BG216500 Rh2BG220800 Rh2CG007100 Rh2CG007200 Rh2CG007400 Rh2CG007500 Rh2CG207700 Rh2CG212800 Rh2DG007100 Rh2DG007500 Rh2DG210800 Rh2DG216700 Rh2DG216800 Rh4AG078900 Rh4AG079000 Rh4AG080700 Rh4AG081300 Rh4AG084000 Rh4AG150000 Rh4BG066400 Rh4BG074400 Rh4BG074500 Rh4BG074900 Rh4BG075200 Rh4BG075300 Rh4BG075900 Rh4BG076700 Rh4BG078500 Rh4BG078600 Rh4BG078700 Rh4BG081500 Rh4CG073200 Rh4CG081000 Rh4CG084300 Rh4CG084400 Rh4CG084500 Rh4CG087200 Rh4CG087300 Rh4CG087800 Rh4CG088200 Rh4CG088900 Rh4CG091200 Rh4CG157300 Rh4DG063300 Rh4DG073700 Rh4DG074000 Rh4DG074100 Rh4DG074200 Rh4DG074300 Rh4DG142800 Rh5AG124600 Rh5AG125000 Rh5AG125100 Rh5AG125200 Rh5AG125300 Rh5AG367000 Rh5AG367100 Rh5AG367200 Rh5AG367300 Rh5AG367400 Rh5BG123600 Rh5BG123800 Rh5BG124300 Rh5BG377200 Rh5BG377500 Rh5CG135300 Rh5CG136400 Rh5CG136500 Rh5CG400600 Rh5CG400700 Rh5CG400800 Rh5DG122900 Rh5DG123000 Rh5DG124000 Rh5DG389900 Rh5DG390200 Rh5DG390700 Rh5DG390800 Rh7AG205300 Rh7AG210900 Rh7AG211500 Rh7AG221400 Rh7BG205100 Rh7BG209200 Rh7BG209400 Rh7BG425000 Rh7BG425100 Rh7CG216600 Rh7CG217200 Rh7CG217300 Rh7CG217700 Rh7DG115300 Rh7DG211800 Rh7DG212400 Rh7DG217600 Rh7DG218400
rosa_wichuraiana Rw0G002820 Rw0G003970 Rw0G003980 Rw0G015020 Rw0G018950 Rw0G020820 Rw0G021460 Rw0G021470 Rw1G023590 Rw1G023600 Rw2G000530 Rw2G000550 Rw2G016290 Rw4G005460 Rw4G006420 Rw4G006430 Rw4G006620 Rw4G006660 Rw4G006670 Rw4G006700 Rw4G006710 Rw4G006750 Rw4G006990 Rw4G007000 Rw4G012240 Rw5G010800 Rw5G010840 Rw5G010860 Rw5G034410 Rw5G034450 Rw5G034460 Rw7G017900 Rw7G017910 Rw7G017930 Rw7G019140 Rw7G037710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2343, 2909
AarI CACCTGC 1 cut(s) 971
AasI GACNNNNNNGTC 1 cut(s) 1151
Acc36I ACCTGC 2 cut(s) 971, 3198
AccB1I GGYRCC 2 cut(s) 1657, 1666
AccI GTMKAC 2 cut(s) 2532, 3651
AccII CGCG 1 cut(s) 435
AciI CCGC 8 cut(s) 423, 433, 1576, 1652, 1670, 1918, 3425, 3589
AclI AACGTT 1 cut(s) 3111
AclWI GGATC 6 cut(s) 548, 992, 1005, 1463, 1935, 2337
AcoI YGGCCR 3 cut(s) 1523, 3321, 3515
AcsI RAATTY 5 cut(s) 352, 1851, 2492, 2810, 3028
AcvI CACGTG 1 cut(s) 2213
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 8 cut(s) 551, 913, 1289, 1437, 2643, 2890, 2982, 3405
AfeI AGCGCT 1 cut(s) 1078
AfiI CCNNNNNNNGG 5 cut(s) 55, 439, 2445, 2855, 3480
AflIII ACRYGT 1 cut(s) 2104
AhdI GACNNNNNGTC 2 cut(s) 333, 832
AjnI CCWGG 3 cut(s) 468, 1684, 1963
AloI GAACNNNNNNTCC 2 cut(s) 30, 62
Alw21I GWGCWC 1 cut(s) 1553
Alw26I GTCTC 8 cut(s) 731, 947, 1328, 2085, 2928, 2966, 3426, 3624
Alw44I GTGCAC 1 cut(s) 1549
AlwI GGATC 6 cut(s) 548, 992, 1005, 1463, 1935, 2337
AlwNI CAGNNNCTG 2 cut(s) 1789, 2503
Ama87I CYCGRG 1 cut(s) 126
Aor51HI AGCGCT 1 cut(s) 1078
AoxI GGCC 5 cut(s) 471, 1523, 3321, 3515, 3570
ApaLI GTGCAC 1 cut(s) 1549
ApeKI GCWGC 4 cut(s) 146, 282, 403, 1445
ApoI RAATTY 5 cut(s) 352, 1851, 2492, 2810, 3028
AseI ATTAAT 1 cut(s) 3137
Asp700I GAANNNNTTC 3 cut(s) 681, 2160, 2493
AspLEI GCGC 1 cut(s) 1079
AspS9I GGNCC 3 cut(s) 3046, 3571, 3607
AsuC2I CCSGG 1 cut(s) 674
AsuHPI GGTGA 8 cut(s) 206, 995, 2041, 2051, 2189, 2593, 2608, 3401
AsuNHI GCTAGC 1 cut(s) 2054
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 3046, 3607
BaeGI GKGCMC 1 cut(s) 1553
BaeI ACNNNNGTAYC 2 cut(s) 2576, 2609
BalI TGGCCA 3 cut(s) 1525, 3323, 3517
BamHI GGATCC 1 cut(s) 997
BanI GGYRCC 2 cut(s) 1657, 1666
BanII GRGCYC 1 cut(s) 1750
BarI GAAGNNNNNNTAC 2 cut(s) 3387, 3419
BbrPI CACGTG 1 cut(s) 2213
BbsI GAAGAC 3 cut(s) 1821, 3065, 3323
Bbv12I GWGCWC 1 cut(s) 1553
BbvI GCAGC 4 cut(s) 133, 294, 415, 1432
BccI CCATC 5 cut(s) 542, 1403, 1630, 2249, 2261
BcgI CGANNNNNNTGC 2 cut(s) 1338, 1372
BciT130I CCWGG 3 cut(s) 470, 1686, 1965
BciVI GTATCC 1 cut(s) 3283
BcnI CCSGG 1 cut(s) 674
BcoDI GTCTC 8 cut(s) 731, 947, 1328, 2085, 2928, 2966, 3426, 3624
BfmI CTRYAG 2 cut(s) 741, 1942
BfoI RGCGCY 1 cut(s) 1080
BfuAI ACCTGC 2 cut(s) 971, 3198
BfuI GTATCC 1 cut(s) 3283
BglI GCCNNNNNGGC 1 cut(s) 3320
BglII AGATCT 1 cut(s) 679
BisI GCNGC 4 cut(s) 147, 283, 404, 1446
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 4 cut(s) 148, 284, 405, 1447
BmcAI AGTACT 1 cut(s) 3405
Bme1390I CCNGG 4 cut(s) 470, 674, 1686, 1965
Bme18I GGWCC 2 cut(s) 3046, 3607
BmeRI GACNNNNNGTC 2 cut(s) 333, 832
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 3 cut(s) 3046, 3571, 3607
BmiI GGNNCC 7 cut(s) 819, 999, 1659, 1668, 1769, 3047, 3609
BmrFI CCNGG 4 cut(s) 470, 674, 1686, 1965
BmrI ACTGGG 1 cut(s) 2864
BmsI GCATC 4 cut(s) 456, 1793, 2104, 2518
BmtI GCTAGC 1 cut(s) 2058
BmuI ACTGGG 1 cut(s) 2864
BpiI GAAGAC 3 cut(s) 1821, 3065, 3323
BplI GAGNNNNNCTC 2 cut(s) 2921, 2953
BpmI CTGGAG 4 cut(s) 140, 480, 2090, 2354
Bpu1102I GCTNAGC 1 cut(s) 344
BpuEI CTTGAG 2 cut(s) 1581, 3069
BpuMI CCSGG 1 cut(s) 674
BsaAI YACGTR 1 cut(s) 2213
BsaBI GATNNNNATC 1 cut(s) 2909
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 1106, 1684, 2398
BsaWI WCCGGW 1 cut(s) 1452
BsaXI ACNNNNNCTCC 8 cut(s) 1087, 1117, 2063, 2093, 2126, 2156, 2352, 2382
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 439, 2445, 2855, 3480
Bse1I ACTGG 6 cut(s) 123, 463, 1668, 1911, 1995, 2859
Bse3DI GCAATG 2 cut(s) 1447, 1613
Bse8I GATNNNNATC 1 cut(s) 2909
BseBI CCWGG 3 cut(s) 470, 1686, 1965
BseDI CCNNGG 3 cut(s) 1106, 1684, 2398
BseJI GATNNNNATC 1 cut(s) 2909
BseLI CCNNNNNNNGG 5 cut(s) 55, 439, 2445, 2855, 3480
BseMI GCAATG 2 cut(s) 1447, 1613
BseMII CTCAG 4 cut(s) 335, 3330, 3341, 3493
BseNI ACTGG 6 cut(s) 123, 463, 1668, 1911, 1995, 2859
BseRI GAGGAG 5 cut(s) 254, 2309, 2312, 2315, 2324
BseSI GKGCMC 1 cut(s) 1553
BseXI GCAGC 4 cut(s) 133, 294, 415, 1432
BseYI CCCAGC 2 cut(s) 1250, 1612
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 5 cut(s) 473, 1525, 3323, 3517, 3572
BshNI GGYRCC 2 cut(s) 1657, 1666
BsiHKAI GWGCWC 1 cut(s) 1553
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 49, 674, 1453
BslFI GGGAC 4 cut(s) 2207, 2422, 2461, 2781
BslI CCNNNNNNNGG 5 cut(s) 55, 439, 2445, 2855, 3480
BsmAI GTCTC 8 cut(s) 731, 947, 1328, 2085, 2928, 2966, 3426, 3624
BsmBI CGTCTC 1 cut(s) 3426
BsmFI GGGAC 4 cut(s) 2207, 2422, 2461, 2781
BsmI GAATGC 4 cut(s) 284, 2714, 3181, 3504
BsnI GGCC 5 cut(s) 473, 1525, 3323, 3517, 3572
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 1553, 1750
Bsp1407I TGTACA 2 cut(s) 2641, 2980
Bsp143I GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
Bsp1720I GCTNAGC 1 cut(s) 344
Bsp19I CCATGG 1 cut(s) 1106
BspACI CCGC 8 cut(s) 423, 433, 1576, 1652, 1670, 1918, 3425, 3589
BspANI GGCC 5 cut(s) 473, 1525, 3323, 3517, 3572
BspCNI CTCAG 4 cut(s) 336, 3329, 3342, 3492
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 2 cut(s) 2169, 2926
BspLI GGNNCC 7 cut(s) 819, 999, 1659, 1668, 1769, 3047, 3609
BspMI ACCTGC 2 cut(s) 971, 3198
BspOI GCTAGC 1 cut(s) 2058
BspPI GGATC 6 cut(s) 548, 992, 1005, 1463, 1935, 2337
BspT107I GGYRCC 2 cut(s) 1657, 1666
BsrDI GCAATG 2 cut(s) 1447, 1613
BsrGI TGTACA 2 cut(s) 2641, 2980
BsrI ACTGG 6 cut(s) 123, 463, 1668, 1911, 1995, 2859
BssECI CCNNGG 3 cut(s) 1106, 1684, 2398
BssMI GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
BssNAI GTATAC 1 cut(s) 3652
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 1106, 2398
Bst1107I GTATAC 1 cut(s) 3652
Bst2UI CCWGG 3 cut(s) 470, 1686, 1965
Bst6I CTCTTC 8 cut(s) 432, 945, 1767, 2286, 2301, 2313, 2319, 2679
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 1346
BstAUI TGTACA 2 cut(s) 2641, 2980
BstBAI YACGTR 1 cut(s) 2213
BstDEI CTNAG 9 cut(s) 344, 1540, 1619, 1846, 1856, 2405, 3316, 3350, 3479
BstDSI CCRYGG 1 cut(s) 1106
BstFNI CGCG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 1 cut(s) 1079
BstKTI GATC 9 cut(s) 246, 543, 616, 682, 1000, 1471, 1930, 1959, 2332
BstMAI GTCTC 8 cut(s) 731, 947, 1328, 2085, 2928, 2966, 3426, 3624
BstMBI GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
BstMWI GCNNNNNNNGC 8 cut(s) 340, 1222, 1346, 1664, 1673, 2055, 2506, 3320
BstNI CCWGG 3 cut(s) 470, 1686, 1965
BstNSI RCATGY 3 cut(s) 1128, 2108, 2210
BstSCI CCNGG 4 cut(s) 468, 672, 1684, 1963
BstSFI CTRYAG 2 cut(s) 741, 1942
BstSLI GKGCMC 1 cut(s) 1553
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 133, 294, 415, 1432
BstV2I GAAGAC 3 cut(s) 1821, 3065, 3323
BstX2I RGATCY 4 cut(s) 679, 997, 1468, 1927
BstXI CCANNNNNNTGG 1 cut(s) 1040
BstYI RGATCY 4 cut(s) 679, 997, 1468, 1927
BstZ17I GTATAC 1 cut(s) 3652
BsuI GTATCC 1 cut(s) 3283
BsuRI GGCC 5 cut(s) 473, 1525, 3323, 3517, 3572
BtgI CCRYGG 1 cut(s) 1106
BtgZI GCGATG 2 cut(s) 1416, 2727
BtsI GCAGTG 4 cut(s) 246, 1262, 1302, 2974
BtsIMutI CAGTG 9 cut(s) 246, 1074, 1262, 1302, 1335, 1661, 1787, 2974, 3324
BveI ACCTGC 2 cut(s) 971, 3198
CaiI CAGNNNCTG 2 cut(s) 1789, 2503
CciI TCATGA 2 cut(s) 2169, 2926
CfoI GCGC 1 cut(s) 1079
Cfr13I GGNCC 3 cut(s) 3046, 3571, 3607
CseI GACGC 6 cut(s) 323, 553, 749, 1124, 1449, 3140
Csp6I GTAC 8 cut(s) 550, 912, 1288, 1436, 2642, 2889, 2981, 3404
CviQI GTAC 8 cut(s) 550, 912, 1288, 1436, 2642, 2889, 2981, 3404
DdeI CTNAG 9 cut(s) 344, 1540, 1619, 1846, 1856, 2405, 3316, 3350, 3479
DpnI GATC 9 cut(s) 245, 542, 615, 681, 999, 1470, 1929, 1958, 2331
DpnII GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
DraI TTTAAA 2 cut(s) 1083, 2088
DrdI GACNNNNNNGTC 1 cut(s) 1151
DriI GACNNNNNGTC 2 cut(s) 333, 832
DseDI GACNNNNNNGTC 1 cut(s) 1151
EaeI YGGCCR 3 cut(s) 1523, 3321, 3515
Eam1104I CTCTTC 8 cut(s) 432, 945, 1767, 2286, 2301, 2313, 2319, 2679
Eam1105I GACNNNNNGTC 2 cut(s) 333, 832
EarI CTCTTC 8 cut(s) 432, 945, 1767, 2286, 2301, 2313, 2319, 2679
Eco130I CCWWGG 2 cut(s) 1106, 2398
Eco24I GRGCYC 1 cut(s) 1750
Eco47I GGWCC 2 cut(s) 3046, 3607
Eco47III AGCGCT 1 cut(s) 1078
Eco72I CACGTG 1 cut(s) 2213
Eco88I CYCGRG 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 3046, 3607
EcoRI GAATTC 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 468, 1684, 1963
EcoT14I CCWWGG 2 cut(s) 1106, 2398
EcoT22I ATGCAT 3 cut(s) 1351, 1428, 3504
EcoT38I GRGCYC 1 cut(s) 1750
ErhI CCWWGG 2 cut(s) 1106, 2398
Esp3I CGTCTC 1 cut(s) 3426
FalI AAGNNNNNCTT 2 cut(s) 1160, 1192
FaqI GGGAC 4 cut(s) 2207, 2422, 2461, 2781
FauI CCCGC 1 cut(s) 3582
FblI GTMKAC 2 cut(s) 2532, 3651
Fnu4HI GCNGC 4 cut(s) 147, 283, 404, 1446
FriOI GRGCYC 1 cut(s) 1750
Fsp4HI GCNGC 4 cut(s) 147, 283, 404, 1446
GlaI GCGC 1 cut(s) 1078
GluI GCNGC 4 cut(s) 147, 283, 404, 1446
GsaI CCCAGC 2 cut(s) 1254, 1616
GsuI CTGGAG 4 cut(s) 140, 480, 2090, 2354
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 5 cut(s) 473, 1525, 3323, 3517, 3572
HapII CCGG 3 cut(s) 49, 674, 1453
HgaI GACGC 6 cut(s) 323, 553, 749, 1124, 1449, 3140
HhaI GCGC 1 cut(s) 1079
Hin1I GRCGYC 1 cut(s) 564
Hin6I GCGC 1 cut(s) 1077
HinP1I GCGC 1 cut(s) 1077
HincII GTYRAC 3 cut(s) 492, 1206, 2533
HindII GTYRAC 3 cut(s) 492, 1206, 2533
HindIII AAGCTT 2 cut(s) 1978, 2014
HpaII CCGG 3 cut(s) 49, 674, 1453
HphI GGTGA 8 cut(s) 206, 995, 2041, 2051, 2189, 2593, 2608, 3401
Hpy166II GTNNAC 9 cut(s) 492, 550, 1206, 1551, 2473, 2533, 2616, 2675, 3652
Hpy8I GTNNAC 9 cut(s) 492, 550, 1206, 1551, 2473, 2533, 2616, 2675, 3652
Hpy99I CGWCG 6 cut(s) 339, 342, 569, 3134, 3389, 3421
HpyCH4IV ACGT 2 cut(s) 2212, 3111
HpyF10VI GCNNNNNNNGC 8 cut(s) 340, 1222, 1346, 1664, 1673, 2055, 2506, 3320
HpyF3I CTNAG 9 cut(s) 344, 1540, 1619, 1846, 1856, 2405, 3316, 3350, 3479
HpySE526I ACGT 2 cut(s) 2212, 3111
Hsp92I GRCGYC 1 cut(s) 564
HspAI GCGC 1 cut(s) 1077
Kzo9I GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
LmnI GCTCC 2 cut(s) 2071, 3483
Lsp1109I GCAGC 4 cut(s) 133, 294, 415, 1432
LweI GCATC 4 cut(s) 456, 1793, 2104, 2518
MaeII ACGT 2 cut(s) 2212, 3111
MaeIII GTNAC 8 cut(s) 1063, 1193, 1417, 1571, 2029, 3287, 3445, 3542
MalI GATC 9 cut(s) 245, 542, 615, 681, 999, 1470, 1929, 1958, 2331
MboI GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
MfeI CAATTG 4 cut(s) 18, 42, 822, 2023
MflI RGATCY 4 cut(s) 679, 997, 1468, 1927
MhlI GDGCHC 2 cut(s) 1553, 1750
MlsI TGGCCA 3 cut(s) 1525, 3323, 3517
MluNI TGGCCA 3 cut(s) 1525, 3323, 3517
MlyI GAGTC 5 cut(s) 842, 2763, 2930, 3083, 3361
MmeI TCCRAC 4 cut(s) 1706, 1905, 1959, 2661
Mox20I TGGCCA 3 cut(s) 1525, 3323, 3517
Mph1103I ATGCAT 3 cut(s) 1351, 1428, 3504
MroXI GAANNNNTTC 3 cut(s) 681, 2160, 2493
MscI TGGCCA 3 cut(s) 1525, 3323, 3517
MslI CAYNNNNRTG 6 cut(s) 210, 2188, 2205, 2211, 2514, 2592
Msp20I TGGCCA 3 cut(s) 1525, 3323, 3517
MspA1I CMGCKG 2 cut(s) 1654, 1672
MspI CCGG 3 cut(s) 49, 674, 1453
MspR9I CCNGG 4 cut(s) 470, 674, 1686, 1965
MunI CAATTG 4 cut(s) 18, 42, 822, 2023
Mva1269I GAATGC 4 cut(s) 284, 2714, 3181, 3504
MvaI CCWGG 3 cut(s) 470, 1686, 1965
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 8 cut(s) 340, 1222, 1346, 1664, 1673, 2055, 2506, 3320
NciI CCSGG 1 cut(s) 674
NcoI CCATGG 1 cut(s) 1106
NdeII GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
NheI GCTAGC 1 cut(s) 2054
NlaIV GGNNCC 7 cut(s) 819, 999, 1659, 1668, 1769, 3047, 3609
NmuCI GTSAC 4 cut(s) 1063, 1417, 1571, 2029
NsiI ATGCAT 3 cut(s) 1351, 1428, 3504
NspI RCATGY 3 cut(s) 1128, 2108, 2210
PaeI GCATGC 1 cut(s) 2210
PaeR7I CTCGAG 1 cut(s) 126
PagI TCATGA 2 cut(s) 2169, 2926
PaqCI CACCTGC 1 cut(s) 971
PciI ACATGT 1 cut(s) 2104
PctI GAATGC 4 cut(s) 284, 2714, 3181, 3504
PdmI GAANNNNTTC 3 cut(s) 681, 2160, 2493
PfeI GAWTC 6 cut(s) 201, 523, 664, 1777, 2607, 2758
PkrI GCNGC 4 cut(s) 148, 284, 405, 1447
PleI GAGTC 5 cut(s) 841, 2763, 2930, 3083, 3360
PmaCI CACGTG 1 cut(s) 2213
PmlI CACGTG 1 cut(s) 2213
PpsI GAGTC 5 cut(s) 841, 2763, 2930, 3083, 3360
Ppu21I YACGTR 1 cut(s) 2213
PpuMI RGGWCCY 2 cut(s) 3046, 3607
PscI ACATGT 1 cut(s) 2104
PshBI ATTAAT 1 cut(s) 3137
PsiI TTATAA 2 cut(s) 2343, 2909
Psp1406I AACGTT 1 cut(s) 3111
Psp5II RGGWCCY 2 cut(s) 3046, 3607
Psp6I CCWGG 3 cut(s) 468, 1684, 1963
PspCI CACGTG 1 cut(s) 2213
PspFI CCCAGC 2 cut(s) 1250, 1612
PspGI CCWGG 3 cut(s) 468, 1684, 1963
PspN4I GGNNCC 7 cut(s) 819, 999, 1659, 1668, 1769, 3047, 3609
PspPI GGNCC 3 cut(s) 3046, 3571, 3607
PspPPI RGGWCCY 2 cut(s) 3046, 3607
PspXI VCTCGAGB 1 cut(s) 126
PstNI CAGNNNCTG 2 cut(s) 1789, 2503
PsuI RGATCY 4 cut(s) 679, 997, 1468, 1927
RsaI GTAC 8 cut(s) 551, 913, 1289, 1437, 2643, 2890, 2982, 3405
RsaNI GTAC 8 cut(s) 550, 912, 1288, 1436, 2642, 2889, 2981, 3404
RseI CAYNNNNRTG 6 cut(s) 210, 2188, 2205, 2211, 2514, 2592
SalI GTCGAC 1 cut(s) 2531
SatI GCNGC 4 cut(s) 147, 283, 404, 1446
Sau3AI GATC 9 cut(s) 243, 540, 613, 679, 997, 1468, 1927, 1956, 2329
Sau96I GGNCC 3 cut(s) 3046, 3571, 3607
ScaI AGTACT 1 cut(s) 3405
SchI GAGTC 5 cut(s) 842, 2763, 2930, 3083, 3361
ScrFI CCNGG 4 cut(s) 470, 674, 1686, 1965
SduI GDGCHC 2 cut(s) 1553, 1750
SfaNI GCATC 4 cut(s) 456, 1793, 2104, 2518
SfcI CTRYAG 2 cut(s) 741, 1942
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 2 cut(s) 3046, 3607
SlaI CTCGAG 1 cut(s) 126
SmiI ATTTAAAT 1 cut(s) 2088
SmiMI CAYNNNNRTG 6 cut(s) 210, 2188, 2205, 2211, 2514, 2592
SmlI CTYRAG 3 cut(s) 126, 1596, 3084
SmoI CTYRAG 3 cut(s) 126, 1596, 3084
SphI GCATGC 1 cut(s) 2210
SsiI CCGC 8 cut(s) 423, 433, 1576, 1652, 1670, 1918, 3425, 3589
SspI AATATT 1 cut(s) 3304
StyD4I CCNGG 4 cut(s) 468, 672, 1684, 1963
StyI CCWWGG 2 cut(s) 1106, 2398
SwaI ATTTAAAT 1 cut(s) 2088
TaiI ACGT 2 cut(s) 2215, 3114
TaqI TCGA 9 cut(s) 127, 651, 1155, 2532, 2699, 2772, 2899, 2913, 2939
TatI WGTACW 4 cut(s) 1287, 2641, 2980, 3403
TfiI GAWTC 6 cut(s) 201, 523, 664, 1777, 2607, 2758
TscAI CASTG 9 cut(s) 253, 1074, 1262, 1302, 1335, 1668, 1794, 2974, 3324
TseFI GTSAC 4 cut(s) 1063, 1417, 1571, 2029
TseI GCWGC 4 cut(s) 146, 282, 403, 1445
Tsp45I GTSAC 4 cut(s) 1063, 1417, 1571, 2029
TspGWI ACGGA 4 cut(s) 567, 762, 2805, 3265
TspRI CASTG 9 cut(s) 253, 1074, 1262, 1302, 1335, 1668, 1794, 2974, 3324
VneI GTGCAC 1 cut(s) 1549
VpaK11BI GGWCC 2 cut(s) 3046, 3607
VspI ATTAAT 1 cut(s) 3137
XapI RAATTY 5 cut(s) 352, 1851, 2492, 2810, 3028
XbaI TCTAGA 2 cut(s) 881, 1183
XceI RCATGY 3 cut(s) 1128, 2108, 2210
XhoI CTCGAG 1 cut(s) 126
XmiI GTMKAC 2 cut(s) 2532, 3651
XmnI GAANNNNTTC 3 cut(s) 681, 2160, 2493
ZrmI AGTACT 1 cut(s) 3405
Zsp2I ATGCAT 3 cut(s) 1351, 1428, 3504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.